NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GAEO-3CIFD
confEVID 1GAEO-3CIFD
pdbIDA 1GAE
pdbIDB 3CIF
pdbChainA O
pdbChainB D
identity 0.606000006198883
indelSize 3
alignment <alignment>
<seq1>TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL-DADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA--GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPS--HKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHISK---</seq1>
<seq2>TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL</seq2>
<ss_1> EEEEEE HHHHHHHHHGGG EEE EEE - HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGHHHH EEEE GGG -- EE HHHHHHHHHHHHHHHHH EEEEEEEE -- GGG EEE GGHHHH EEEEEE EEEEEEEEEE HHHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEEEE HHHHHHHHHHHHHH ---</ss_1>
<ss_2> EEEEEE HHHHHHHHHHH EEE EEE HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGG EEEE GGG HHHH EE HHHHHHHHHHHHHHH EEEEEEEE GGG GGG EEE HHHHHHHH EEEEEE EEEEEEEE HHHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEE HHHHHHHHHHHHHHGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>INDLL-DADYM</sequence>
<secondary-structure>EE - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 233 CA ILE O 30 20.885 87.713 21.842 1.00 23.77 C </line>
<line>ATOM 241 CA ASN O 31 18.143 90.154 22.793 1.00 23.68 C </line>
<line>ATOM 249 CA ASP O 32 15.238 89.435 25.114 1.00 24.44 C </line>
<line>ATOM 257 CA LEU O 33 13.523 91.015 28.107 1.00 35.38 C </line>
<line>ATOM 265 CA LEU O 34 15.004 88.405 30.495 1.00 35.74 C </line>
<line>ATOM 273 CA ASP O 36 18.204 88.692 32.540 1.00 36.62 C </line>
<line>ATOM 281 CA ALA O 37 21.318 86.812 31.442 1.00 31.20 C </line>
<line>ATOM 286 CA ASP O 38 21.081 84.573 34.504 1.00 31.02 C </line>
<line>ATOM 294 CA TYR O 39 17.620 83.336 33.616 1.00 20.62 C </line>
<line>ATOM 306 CA MET O 40 18.495 82.973 29.915 1.00 25.38 C </line>
</atom-coordinate>
<distance-map>
<line> MET TYR ASP ALA ASP LEU LEU ASP ASN ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.66 12.98 13.05 9.65 11.07 10.49 10.22 6.75 3.79 </line>
<line>ASN CA 10.12 12.80 13.30 9.80 9.86 8.50 7.09 3.79 </line>
<line>ASP CA 8.68 10.73 12.08 9.16 8.03 5.48 3.79 </line>
<line>LEU CA 9.63 10.30 11.81 9.46 6.85 3.84 </line>
<line>LEU CA 6.48 6.50 8.23 6.58 3.81 </line>
<line>ASP CA 6.30 5.49 5.39 3.80 </line>
<line>ALA CA 5.00 5.52 3.80 </line>
<line>ASP CA 5.51 3.78 </line>
<line>TYR CA 3.82 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>ILE CA 517</line>
<line>ASN CA 462</line>
<line>ASP CA 388</line>
<line>LEU CA 273</line>
<line>LEU CA 255</line>
<line>ASP CA 250</line>
<line>ALA CA 317</line>
<line>ASP CA 257</line>
<line>TYR CA 254</line>
<line>MET CA 368</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>3CIFD</entryIDChain>
<sequence>INDPFMDVEYM</sequence>
<secondary-structure>EE HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 7787 CA ILE D 32 73.411 125.361 27.281 1.00 21.19 C </line>
<line>ATOM 7795 CA ASN D 33 70.768 127.861 28.436 1.00 21.37 C </line>
<line>ATOM 7803 CA ASP D 34 67.206 127.096 29.590 1.00 22.27 C </line>
<line>ATOM 7811 CA PRO D 35 65.543 128.926 32.531 1.00 23.59 C </line>
<line>ATOM 7818 CA PHE D 36 62.713 126.368 32.862 1.00 24.73 C </line>
<line>ATOM 7829 CA MET D 37 65.213 123.622 33.586 1.00 25.20 C </line>
<line>ATOM 7837 CA ASP D 38 67.890 123.316 36.297 1.00 25.44 C </line>
<line>ATOM 7845 CA VAL D 39 71.112 121.288 35.825 1.00 25.04 C </line>
<line>ATOM 7852 CA GLU D 40 69.674 118.072 37.292 1.00 24.14 C </line>
<line>ATOM 7861 CA TYR D 41 66.614 118.408 35.029 1.00 22.62 C </line>
<line>ATOM 7873 CA MET D 42 68.838 118.982 31.964 1.00 22.28 C </line>
</atom-coordinate>
<distance-map>
<line> MET TYR GLU VAL ASP MET PHE PRO ASP ASN ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.14 12.43 12.94 9.74 10.77 10.49 12.11 10.11 6.84 3.82 </line>
<line>ASN CA 9.75 12.25 13.25 9.90 9.53 8.68 9.31 6.72 3.82 </line>
<line>ASP CA 8.61 10.27 12.12 9.37 7.73 5.66 5.61 3.84 </line>
<line>PRO CA 10.49 10.86 12.55 10.01 7.15 5.42 3.83 </line>
<line>PHE CA 9.64 9.13 11.70 10.25 6.92 3.78 </line>
<line>MET CA 6.11 5.59 8.03 6.73 3.82 </line>
<line>ASP CA 6.20 5.23 5.63 3.84 </line>
<line>VAL CA 5.04 5.40 3.82 </line>
<line>GLU CA 5.47 3.82 </line>
<line>TYR CA 3.83 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>ILE CA 534</line>
<line>ASN CA 476</line>
<line>ASP CA 399</line>
<line>PRO CA 293</line>
<line>PHE CA 244</line>
<line>MET CA 277</line>
<line>ASP CA 269</line>
<line>VAL CA 311</line>
<line>GLU CA 261</line>
<line>TYR CA 287</line>
<line>MET CA 397</line>
</n14>
</entryChain>
<parallel>
<x>-50.6150016784668</x>
<y>-36.43600082397461</y>
<z>-4.159999847412109</z>
</parallel>
<rotation>
<x>0.9309999942779541</x>
<y>0.17900000512599945</y>
<z>-0.3190000057220459</z>
<x>-0.28299999237060547</x>
<y>0.9049999713897705</y>
<z>-0.3179999887943268</z>
<x>0.23199999332427979</x>
<y>0.38600000739097595</y>
<z>0.8930000066757202</z>
</rotation>
<rmsd>1.1927859783172607</rmsd>
<dmax>2.946044921875</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>FDKYA--GQDIV</sequence>
<secondary-structure>GGG -- E</secondary-structure>
<atom-coordinate>
<line>ATOM 1032 CA PHE O 134 14.385 78.222 -1.899 1.00 21.03 C </line>
<line>ATOM 1043 CA ASP O 135 15.289 78.471 -5.598 1.00 30.58 C </line>
<line>ATOM 1051 CA LYS O 136 12.819 81.342 -5.998 1.00 24.92 C </line>
<line>ATOM 1060 CA TYR O 137 14.711 83.591 -3.571 1.00 22.88 C </line>
<line>ATOM 1072 CA ALA O 138 15.499 86.881 -5.314 1.00 24.55 C </line>
<line>ATOM 1077 CA GLY O 138A 17.661 89.011 -3.016 1.00 17.70 C </line>
<line>ATOM 1081 CA GLN O 141 14.932 90.037 -0.555 1.00 17.01 C </line>
<line>ATOM 1090 CA ASP O 142 16.405 91.373 2.701 1.00 19.02 C </line>
<line>ATOM 1098 CA ILE O 143 13.467 90.336 4.904 1.00 17.19 C </line>
<line>ATOM 1106 CA VAL O 144 12.024 86.825 4.547 1.00 18.72 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASP GLN GLY ALA TYR LYS ASP PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 11.01 13.92 14.08 11.90 11.33 9.37 5.63 5.38 3.82 </line>
<line>ASP CA 13.54 15.95 15.38 12.62 11.11 8.42 5.54 3.81 </line>
<line>LYS CA 11.91 14.15 13.75 10.47 9.55 6.19 3.81 </line>
<line>TYR CA 9.14 10.90 10.14 7.12 6.20 3.81 </line>
<line>ALA CA 10.46 10.98 9.23 5.74 3.81 </line>
<line>GLY CA 9.68 9.06 6.31 3.82 </line>
<line>GLN CA 6.69 5.66 3.82 </line>
<line>ASP CA 6.58 3.82 </line>
<line>ILE CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 358</line>
<line>ASP CA 244</line>
<line>LYS CA 234</line>
<line>TYR CA 268</line>
<line>ALA CA 202</line>
<line>GLY CA 226</line>
<line>GLN CA 283</line>
<line>ASP CA 346</line>
<line>ILE CA 425</line>
<line>VAL CA 453</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>3CIFD</entryIDChain>
<sequence>NTEYDPSKFNVI</sequence>
<secondary-structure>GGG HHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 8580 CA ASN D 137 73.657 127.235 2.032 1.00 21.84 C </line>
<line>ATOM 8588 CA THR D 138 76.647 128.381 -0.074 1.00 24.05 C </line>
<line>ATOM 8595 CA GLU D 139 74.801 131.686 -0.646 1.00 25.49 C </line>
<line>ATOM 8604 CA TYR D 140 75.581 132.595 2.981 1.00 25.98 C </line>
<line>ATOM 8616 CA ASP D 141 77.681 135.753 3.320 1.00 27.24 C </line>
<line>ATOM 8624 CA PRO D 142 79.586 136.073 6.643 1.00 27.62 C </line>
<line>ATOM 8631 CA SER D 143 80.300 139.780 6.044 1.00 28.10 C </line>
<line>ATOM 8637 CA LYS D 144 76.578 140.587 5.804 1.00 27.90 C </line>
<line>ATOM 8646 CA PHE D 145 74.872 138.235 8.296 1.00 26.39 C </line>
<line>ATOM 8657 CA ASN D 146 75.446 137.438 11.971 1.00 24.79 C </line>
<line>ATOM 8665 CA VAL D 147 71.931 136.026 12.434 1.00 22.61 C </line>
<line>ATOM 8672 CA ILE D 148 70.684 133.320 10.050 1.00 20.36 C </line>
</atom-coordinate>
<distance-map>
<line> ILE VAL ASN PHE LYS SER PRO ASP TYR GLU THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.50 13.73 14.36 12.72 14.18 14.75 11.60 9.51 5.77 5.32 3.83 </line>
<line>THR CA 12.75 15.40 15.12 13.05 13.55 13.44 10.63 8.18 5.31 3.83 </line>
<line>GLU CA 11.58 14.08 13.88 11.08 11.13 11.85 9.76 6.37 3.82 </line>
<line>TYR CA 8.63 10.70 10.21 7.78 8.53 9.13 6.45 3.81 </line>
<line>ASP CA 10.01 10.78 9.09 6.23 5.55 5.52 3.84 </line>
<line>PRO CA 9.92 9.60 6.88 5.44 5.49 3.82 </line>
<line>SER CA 12.26 11.18 8.01 6.08 3.82 </line>
<line>LYS CA 10.28 9.29 7.02 3.83 </line>
<line>PHE CA 6.69 5.54 3.80 </line>
<line>ASN CA 6.58 3.82 </line>
<line>VAL CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ASN CA 392</line>
<line>THR CA 283</line>
<line>GLU CA 267</line>
<line>TYR CA 311</line>
<line>ASP CA 246</line>
<line>PRO CA 261</line>
<line>SER CA 177</line>
<line>LYS CA 198</line>
<line>PHE CA 320</line>
<line>ASN CA 370</line>
<line>VAL CA 439</line>
<line>ILE CA 490</line>
</n14>
</entryChain>
<parallel>
<x>-60.86399841308594</x>
<y>-48.71099853515625</y>
<z>-6.150000095367432</z>
</parallel>
<rotation>
<x>0.9649999737739563</x>
<y>0.13199999928474426</y>
<z>-0.22599999606609344</z>
<x>-0.16899999976158142</x>
<y>0.9729999899864197</y>
<z>-0.15700000524520874</z>
<x>0.19900000095367432</x>
<y>0.1899999976158142</y>
<z>0.9610000252723694</z>
</rotation>
<rmsd>1.8558909893035889</rmsd>
<dmax>2.8018689155578613</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>VDGPS--HKDWR</sequence>
<secondary-structure> -- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1400 CA VAL O 185 -5.888 73.640 33.406 1.00 65.74 C </line>
<line>ATOM 1407 CA ASP O 186 -9.180 75.131 32.122 1.00 55.82 C </line>
<line>ATOM 1415 CA GLY O 187 -8.268 78.795 31.820 1.00 65.08 C </line>
<line>ATOM 1419 CA PRO O 188 -9.220 81.970 29.846 1.00 73.80 C </line>
<line>ATOM 1426 CA SER O 189 -8.506 82.079 26.104 1.00 72.38 C </line>
<line>ATOM 1432 CA HIS O 190 -10.715 84.738 24.505 1.00 68.00 C </line>
<line>ATOM 1442 CA LYS O 191 -9.027 84.298 21.124 1.00 61.26 C </line>
<line>ATOM 1451 CA ASP O 192 -9.807 80.564 21.021 1.00 44.19 C </line>
<line>ATOM 1459 CA TRP O 193 -12.100 79.090 23.662 1.00 25.12 C </line>
<line>ATOM 1473 CA ARG O 194 -11.150 75.469 22.929 1.00 17.99 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS HIS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.87 12.78 14.72 16.56 15.02 11.46 9.65 5.90 3.84 </line>
<line>ASP CA 9.41 9.79 12.38 14.32 12.36 9.22 7.21 3.79 </line>
<line>GLY CA 9.92 9.02 11.05 12.05 9.74 6.60 3.86 </line>
<line>PRO CA 9.69 7.40 8.96 9.03 6.20 3.81 </line>
<line>SER CA 7.80 5.27 5.46 5.48 3.81 </line>
<line>HIS CA 9.41 5.88 5.51 3.80 </line>
<line>LYS CA 9.26 6.56 3.82 </line>
<line>ASP CA 5.60 3.80 </line>
<line>TRP CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 170</line>
<line>ASP CA 187</line>
<line>GLY CA 174</line>
<line>PRO CA 153</line>
<line>SER CA 180</line>
<line>HIS CA 128</line>
<line>LYS CA 137</line>
<line>ASP CA 200</line>
<line>TRP CA 189</line>
<line>ARG CA 259</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>3CIFD</entryIDChain>
<sequence>VDGPSKGGKDWR</sequence>
<secondary-structure> GGG G</secondary-structure>
<atom-coordinate>
<line>ATOM 8970 CA VAL D 189 43.606 117.916 26.112 1.00 15.96 C </line>
<line>ATOM 8977 CA ASP D 190 41.334 120.627 24.643 1.00 16.71 C </line>
<line>ATOM 8985 CA GLY D 191 42.641 124.001 25.829 1.00 18.82 C </line>
<line>ATOM 8989 CA PRO D 192 43.697 127.517 24.778 1.00 21.35 C </line>
<line>ATOM 8996 CA SER D 193 46.701 127.870 22.457 1.00 24.64 C </line>
<line>ATOM 9002 CA LYS D 194 49.390 130.426 23.383 1.00 27.96 C </line>
<line>ATOM 9011 CA GLY D 195 48.277 133.881 22.182 1.00 29.49 C </line>
<line>ATOM 9015 CA GLY D 196 44.943 132.359 21.103 1.00 30.06 C </line>
<line>ATOM 9019 CA LYS D 197 46.061 132.204 17.465 1.00 29.53 C </line>
<line>ATOM 9028 CA ASP D 198 46.062 128.522 16.437 1.00 26.62 C </line>
<line>ATOM 9036 CA TRP D 199 42.720 127.263 17.799 1.00 23.05 C </line>
<line>ATOM 9050 CA ARG D 200 42.993 123.831 16.141 1.00 20.55 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS GLY GLY LYS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.61 12.54 14.56 16.88 15.35 17.09 14.05 11.05 9.69 6.17 3.83 </line>
<line>ASP CA 9.24 9.63 12.33 14.42 12.77 15.16 12.75 9.28 7.29 3.81 </line>
<line>GLY CA 9.70 8.67 10.97 12.20 9.87 11.94 9.63 6.54 3.82 </line>
<line>PRO CA 9.42 7.05 8.73 9.00 6.21 8.26 6.54 3.81 </line>
<line>SER CA 8.36 6.16 6.09 6.64 5.01 6.22 3.82 </line>
<line>LYS CA 11.70 9.26 7.93 7.02 5.36 3.82 </line>
<line>GLY CA 12.86 9.69 8.16 5.47 3.82 </line>
<line>GLY CA 10.06 6.47 6.14 3.81 </line>
<line>LYS CA 9.02 5.97 3.82 </line>
<line>ASP CA 5.61 3.82 </line>
<line>TRP CA 3.82 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 165</line>
<line>ASP CA 181</line>
<line>GLY CA 167</line>
<line>PRO CA 158</line>
<line>SER CA 191</line>
<line>LYS CA 160</line>
<line>GLY CA 116</line>
<line>GLY CA 125</line>
<line>LYS CA 146</line>
<line>ASP CA 215</line>
<line>TRP CA 207</line>
<line>ARG CA 267</line>
</n14>
</entryChain>
<parallel>
<x>-53.207000732421875</x>
<y>-46.224998474121094</y>
<z>5.139999866485596</z>
</parallel>
<rotation>
<x>0.9160000085830688</x>
<y>0.23199999332427979</y>
<z>-0.32600000500679016</z>
<x>-0.32499998807907104</x>
<y>0.9070000052452087</y>
<z>-0.2669999897480011</z>
<x>0.2329999953508377</x>
<y>0.35100001096725464</y>
<z>0.9070000052452087</z>
</rotation>
<rmsd>0.7578529715538025</rmsd>
<dmax>1.3846570253372192</dmax>
</indel>