NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GAZA-2G4NF
confEVID 1GAZA-2G4NF
pdbIDA 1GAZ
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KIFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GAZ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GAZA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 344 CA THR A 43 3.285 8.564 25.130 1.00 11.16 C </line>
<line>ATOM 351 CA ASN A 44 4.692 5.062 25.035 1.00 12.86 C </line>
<line>ATOM 359 CA TYR A 45 3.466 2.151 27.095 1.00 10.03 C </line>
<line>ATOM 371 CA ASN A 46 6.095 -0.463 27.982 1.00 11.95 C </line>
<line>ATOM 379 CA ALA A 47 4.061 -3.687 28.275 1.00 10.94 C </line>
<line>ATOM 384 CA GLY A 48 7.166 -5.528 29.459 1.00 9.25 C </line>
<line>ATOM 388 CA ASP A 49 7.340 -3.720 32.789 1.00 8.88 C </line>
<line>ATOM 396 CA ARG A 50 3.988 -1.930 32.921 1.00 11.56 C </line>
<line>ATOM 407 CA SER A 51 5.477 1.583 32.874 1.00 7.64 C </line>
<line>ATOM 413 CA THR A 52 4.732 4.514 30.535 1.00 5.67 C </line>
<line>ATOM 420 CA ASP A 53 6.971 7.229 29.029 1.00 7.20 C </line>
<line>ATOM 428 CA TYR A 54 5.453 10.726 29.056 1.00 6.95 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.98 5.53 6.91 10.65 13.09 15.03 15.24 12.67 9.88 6.71 3.78 </line>
<line>ASN CA 6.99 5.08 5.53 8.61 10.56 12.01 11.74 9.35 6.42 3.77 </line>
<line>TYR CA 9.02 6.47 4.36 6.15 7.13 9.05 8.85 5.99 3.81 </line>
<line>ASN CA 11.26 7.81 5.76 5.34 5.57 5.94 5.38 3.82 </line>
<line>ALA CA 14.50 11.32 8.53 7.14 4.97 5.58 3.80 </line>
<line>GLY CA 16.35 12.77 10.39 8.07 5.92 3.79 </line>
<line>ASP CA 15.04 11.58 8.93 5.62 3.80 </line>
<line>ARG CA 13.31 10.39 6.91 3.82 </line>
<line>SER CA 9.91 6.99 3.82 </line>
<line>THR CA 6.43 3.83 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 291</line>
<line>ASN CA 260</line>
<line>TYR CA 227</line>
<line>ASN CA 202</line>
<line>ALA CA 141</line>
<line>GLY CA 126</line>
<line>ASP CA 165</line>
<line>ARG CA 197</line>
<line>SER CA 260</line>
<line>THR CA 322</line>
<line>ASP CA 412</line>
<line>TYR CA 437</line>
</n14>
</entryChain>
<parallel>
<x>54.404998779296875</x>
<y>13.520999908447266</y>
<z>89.27200317382812</z>
</parallel>
<rotation>
<x>-0.3499999940395355</x>
<y>0.41999998688697815</y>
<z>0.8379999995231628</z>
<x>-0.8230000138282776</x>
<y>0.28999999165534973</y>
<z>-0.48899999260902405</z>
<x>-0.4480000138282776</x>
<y>-0.8600000143051147</y>
<z>0.24400000274181366</z>
</rotation>
<rmsd>0.6844720244407654</rmsd>
<dmax>1.2662450075149536</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GAZ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GAZA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 755 CA ARG A 98 15.963 16.283 38.162 1.00 4.64 C </line>
<line>ATOM 766 CA VAL A 99 16.868 13.264 36.003 1.00 5.15 C </line>
<line>ATOM 773 CA VAL A 100 20.249 14.675 34.986 1.00 5.47 C </line>
<line>ATOM 780 CA ARG A 101 21.202 15.582 38.559 1.00 9.14 C </line>
<line>ATOM 791 CA ASP A 102 21.678 11.816 39.048 1.00 9.78 C </line>
<line>ATOM 799 CA PRO A 103 25.021 10.064 38.297 1.00 12.42 C </line>
<line>ATOM 806 CA GLN A 104 24.300 9.210 34.646 1.00 12.75 C </line>
<line>ATOM 815 CA GLY A 105 23.502 12.762 33.583 1.00 11.87 C </line>
<line>ATOM 819 CA ILE A 106 22.129 13.024 30.008 1.00 9.23 C </line>
<line>ATOM 827 CA ARG A 107 23.010 9.327 29.616 1.00 9.17 C </line>
<line>ATOM 838 CA ALA A 108 19.795 8.452 31.516 1.00 9.20 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.96 13.08 10.73 9.50 11.48 10.99 7.31 5.30 5.57 3.82 </line>
<line>VAL CA 7.20 9.70 7.98 7.08 8.57 9.05 5.87 5.54 3.80 </line>
<line>VAL CA 7.14 8.07 5.57 4.03 6.81 7.42 5.17 3.81 </line>
<line>ARG CA 10.12 11.06 8.97 6.16 8.09 6.72 3.83 </line>
<line>ASP CA 8.46 9.85 9.13 5.84 5.75 3.85 </line>
<line>PRO CA 8.71 8.94 9.26 5.64 3.82 </line>
<line>GLN CA 5.54 5.19 6.39 3.79 </line>
<line>GLY CA 6.05 5.27 3.84 </line>
<line>ILE CA 5.35 3.82 </line>
<line>ARG CA 3.84 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 337</line>
<line>VAL CA 391</line>
<line>VAL CA 340</line>
<line>ARG CA 240</line>
<line>ASP CA 226</line>
<line>PRO CA 173</line>
<line>GLN CA 224</line>
<line>GLY CA 297</line>
<line>ILE CA 386</line>
<line>ARG CA 313</line>
<line>ALA CA 350</line>
</n14>
</entryChain>
<parallel>
<x>19.69499969482422</x>
<y>3.309000015258789</y>
<z>91.4010009765625</z>
</parallel>
<rotation>
<x>-0.21699999272823334</x>
<y>0.2280000001192093</y>
<z>0.9490000009536743</z>
<x>-0.8790000081062317</x>
<y>0.3779999911785126</y>
<z>-0.2919999957084656</z>
<x>-0.42500001192092896</x>
<y>-0.8970000147819519</y>
<z>0.11800000071525574</z>
</rotation>
<rmsd>1.000560998916626</rmsd>
<dmax>2.217226982116699</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GAZ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GAZA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 894 CA ASN A 114 21.983 5.963 20.521 1.00 6.45 C </line>
<line>ATOM 902 CA ARG A 115 21.419 9.139 18.514 1.00 9.20 C </line>
<line>ATOM 913 CA CYS A 116 23.142 12.110 20.147 1.00 5.75 C </line>
<line>ATOM 919 CA GLN A 117 26.246 10.912 21.964 1.00 7.20 C </line>
<line>ATOM 928 CA ASN A 118 29.407 11.509 19.891 1.00 9.30 C </line>
<line>ATOM 936 CA ARG A 119 27.343 12.988 17.093 1.00 8.82 C </line>
<line>ATOM 947 CA ASP A 120 27.451 16.379 15.375 1.00 11.48 C </line>
<line>ATOM 955 CA VAL A 121 24.381 17.978 17.033 1.00 12.12 C </line>
<line>ATOM 962 CA ARG A 122 25.049 21.548 15.800 1.00 16.36 C </line>
<line>ATOM 973 CA GLN A 123 22.204 21.465 13.300 1.00 12.92 C </line>
<line>ATOM 982 CA TYR A 124 19.665 21.382 16.120 1.00 8.05 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.20 17.10 16.57 12.74 12.84 9.48 9.29 6.69 6.27 3.80 </line>
<line>ARG CA 12.60 13.41 13.21 9.44 9.93 7.21 8.45 6.19 3.80 </line>
<line>CYS CA 10.69 11.63 10.56 6.76 7.72 5.27 6.30 3.79 </line>
<line>GLN CA 13.68 14.24 12.35 8.82 8.65 5.41 3.83 </line>
<line>ASN CA 14.37 13.94 11.68 8.68 6.92 3.78 </line>
<line>ARG CA 11.42 10.61 8.96 5.80 3.80 </line>
<line>ASP CA 9.28 7.60 5.72 3.84 </line>
<line>VAL CA 5.89 5.55 3.84 </line>
<line>ARG CA 5.40 3.79 </line>
<line>GLN CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 219</line>
<line>ARG CA 263</line>
<line>CYS CA 308</line>
<line>GLN CA 272</line>
<line>ASN CA 195</line>
<line>ARG CA 219</line>
<line>ASP CA 199</line>
<line>VAL CA 283</line>
<line>ARG CA 232</line>
<line>GLN CA 229</line>
<line>TYR CA 337</line>
</n14>
</entryChain>
<parallel>
<x>20.02400016784668</x>
<y>22.347000122070312</y>
<z>109.2959976196289</z>
</parallel>
<rotation>
<x>-0.40299999713897705</x>
<y>0.3970000147819519</y>
<z>0.824999988079071</z>
<x>-0.75</x>
<y>0.3720000088214874</y>
<z>-0.5460000038146973</z>
<x>-0.5239999890327454</x>
<y>-0.8389999866485596</y>
<z>0.14800000190734863</z>
</rotation>
<rmsd>1.2057520151138306</rmsd>
<dmax>2.438697099685669</dmax>
</indel>