NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GB0A-2G4NF
confEVID 1GB0A-2G4NF
pdbIDA 1GB0
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KLFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB0A</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 344 CA THR A 43 3.150 8.566 25.871 1.00 19.88 C </line>
<line>ATOM 351 CA ASN A 44 4.626 5.078 25.563 1.00 17.98 C </line>
<line>ATOM 359 CA TYR A 45 3.363 2.236 27.738 1.00 14.61 C </line>
<line>ATOM 371 CA ASN A 46 5.978 -0.406 28.588 1.00 15.90 C </line>
<line>ATOM 379 CA ALA A 47 3.983 -3.656 28.796 1.00 14.11 C </line>
<line>ATOM 384 CA GLY A 48 7.093 -5.446 30.006 1.00 14.88 C </line>
<line>ATOM 388 CA ASP A 49 7.289 -3.659 33.355 1.00 12.22 C </line>
<line>ATOM 396 CA ARG A 50 3.944 -1.846 33.502 1.00 15.56 C </line>
<line>ATOM 407 CA SER A 51 5.423 1.651 33.408 1.00 13.55 C </line>
<line>ATOM 413 CA THR A 52 4.666 4.538 31.034 1.00 8.85 C </line>
<line>ATOM 420 CA ASP A 53 6.917 7.228 29.498 1.00 8.94 C </line>
<line>ATOM 428 CA TYR A 54 5.401 10.709 29.452 1.00 11.39 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.74 5.40 6.72 10.48 12.93 14.92 15.13 12.59 9.79 6.60 3.80 </line>
<line>ASN CA 6.89 5.04 5.50 8.60 10.56 12.01 11.69 9.34 6.41 3.80 </line>
<line>TYR CA 8.88 6.38 4.23 6.06 7.09 9.04 8.84 6.02 3.81 </line>
<line>ASN CA 11.16 7.75 5.67 5.27 5.51 5.92 5.35 3.82 </line>
<line>ALA CA 14.45 11.29 8.52 7.18 5.04 5.63 3.79 </line>
<line>GLY CA 16.25 12.69 10.33 8.05 5.92 3.80 </line>
<line>ASP CA 15.01 11.56 8.91 5.63 3.81 </line>
<line>ARG CA 13.27 10.35 6.88 3.80 </line>
<line>SER CA 9.88 6.97 3.81 </line>
<line>THR CA 6.41 3.83 </line>
<line>ASP CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 299</line>
<line>ASN CA 263</line>
<line>TYR CA 232</line>
<line>ASN CA 201</line>
<line>ALA CA 142</line>
<line>GLY CA 129</line>
<line>ASP CA 166</line>
<line>ARG CA 198</line>
<line>SER CA 262</line>
<line>THR CA 323</line>
<line>ASP CA 415</line>
<line>TYR CA 439</line>
</n14>
</entryChain>
<parallel>
<x>54.48699951171875</x>
<y>13.475000381469727</y>
<z>88.69000244140625</z>
</parallel>
<rotation>
<x>-0.3540000021457672</x>
<y>0.41100001335144043</y>
<z>0.8399999737739563</z>
<x>-0.8220000267028809</x>
<y>0.2919999957084656</y>
<z>-0.49000000953674316</z>
<x>-0.44699999690055847</x>
<y>-0.8629999756813049</y>
<z>0.23399999737739563</z>
</rotation>
<rmsd>0.7072579860687256</rmsd>
<dmax>1.318071961402893</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB0A</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 755 CA ARG A 98 15.927 16.357 38.537 1.00 11.22 C </line>
<line>ATOM 766 CA VAL A 99 16.784 13.300 36.413 1.00 11.86 C </line>
<line>ATOM 773 CA VAL A 100 20.205 14.634 35.436 1.00 11.77 C </line>
<line>ATOM 780 CA ARG A 101 21.111 15.622 38.987 1.00 15.02 C </line>
<line>ATOM 791 CA ASP A 102 21.647 11.870 39.458 1.00 15.30 C </line>
<line>ATOM 799 CA PRO A 103 25.066 10.247 38.679 1.00 17.48 C </line>
<line>ATOM 806 CA GLN A 104 24.259 9.219 35.094 1.00 12.15 C </line>
<line>ATOM 815 CA GLY A 105 23.287 12.714 34.072 1.00 11.12 C </line>
<line>ATOM 819 CA ILE A 106 22.061 12.909 30.455 1.00 12.03 C </line>
<line>ATOM 827 CA ARG A 107 22.995 9.227 30.053 1.00 12.81 C </line>
<line>ATOM 838 CA ALA A 108 19.783 8.346 31.935 1.00 12.56 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.07 13.14 10.72 9.35 11.50 10.99 7.33 5.26 5.56 3.82 </line>
<line>VAL CA 7.32 9.78 7.97 6.94 8.62 9.11 5.91 5.54 3.80 </line>
<line>VAL CA 7.21 8.12 5.59 3.88 6.77 7.31 5.09 3.80 </line>
<line>ARG CA 10.22 11.15 9.00 6.11 8.13 6.68 3.82 </line>
<line>ASP CA 8.51 9.86 9.07 5.69 5.74 3.86 </line>
<line>PRO CA 8.78 8.93 9.15 5.52 3.82 </line>
<line>GLN CA 5.55 5.20 6.32 3.77 </line>
<line>GLY CA 5.99 5.33 3.82 </line>
<line>ILE CA 5.31 3.82 </line>
<line>ARG CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 337</line>
<line>VAL CA 389</line>
<line>VAL CA 340</line>
<line>ARG CA 241</line>
<line>ASP CA 224</line>
<line>PRO CA 177</line>
<line>GLN CA 223</line>
<line>GLY CA 299</line>
<line>ILE CA 390</line>
<line>ARG CA 309</line>
<line>ALA CA 346</line>
</n14>
</entryChain>
<parallel>
<x>19.77199935913086</x>
<y>3.308000087738037</y>
<z>90.96900177001953</z>
</parallel>
<rotation>
<x>-0.22100000083446503</x>
<y>0.22599999606609344</y>
<z>0.9490000009536743</z>
<x>-0.8849999904632568</x>
<y>0.3630000054836273</y>
<z>-0.2930000126361847</z>
<x>-0.41100001335144043</x>
<y>-0.9039999842643738</y>
<z>0.11999999731779099</z>
</rotation>
<rmsd>1.018815040588379</rmsd>
<dmax>2.264688014984131</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB0A</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 894 CA ASN A 114 21.998 5.789 20.861 1.00 10.23 C </line>
<line>ATOM 902 CA ARG A 115 21.246 9.011 18.964 1.00 11.62 C </line>
<line>ATOM 913 CA CYS A 116 23.120 11.910 20.518 1.00 12.39 C </line>
<line>ATOM 919 CA GLN A 117 26.225 10.779 22.417 1.00 12.41 C </line>
<line>ATOM 928 CA ASN A 118 29.437 11.350 20.438 1.00 14.69 C </line>
<line>ATOM 936 CA ARG A 119 27.415 12.876 17.615 1.00 15.23 C </line>
<line>ATOM 947 CA ASP A 120 27.440 16.237 15.833 1.00 19.77 C </line>
<line>ATOM 955 CA VAL A 121 24.356 17.715 17.562 1.00 17.34 C </line>
<line>ATOM 962 CA ARG A 122 24.960 21.300 16.378 1.00 23.80 C </line>
<line>ATOM 973 CA GLN A 123 22.322 21.005 13.675 1.00 19.13 C </line>
<line>ATOM 982 CA TYR A 124 19.663 20.980 16.414 1.00 16.37 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.00 16.83 16.42 12.60 12.81 9.49 9.30 6.72 6.23 3.81 </line>
<line>ARG CA 12.34 13.15 13.10 9.35 10.02 7.40 8.65 6.31 3.79 </line>
<line>CYS CA 10.54 11.41 10.43 6.63 7.70 5.27 6.34 3.81 </line>
<line>GLN CA 13.53 14.01 12.20 8.67 8.64 5.37 3.82 </line>
<line>ASN CA 14.30 13.77 11.64 8.64 7.01 3.79 </line>
<line>ARG CA 11.28 10.37 8.86 5.73 3.80 </line>
<line>ASP CA 9.13 7.32 5.66 3.83 </line>
<line>VAL CA 5.83 5.48 3.82 </line>
<line>ARG CA 5.31 3.79 </line>
<line>GLN CA 3.82 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 216</line>
<line>ARG CA 266</line>
<line>CYS CA 310</line>
<line>GLN CA 275</line>
<line>ASN CA 195</line>
<line>ARG CA 223</line>
<line>ASP CA 200</line>
<line>VAL CA 288</line>
<line>ARG CA 237</line>
<line>GLN CA 232</line>
<line>TYR CA 337</line>
</n14>
</entryChain>
<parallel>
<x>20.06100082397461</x>
<y>22.527999877929688</y>
<z>108.83000183105469</z>
</parallel>
<rotation>
<x>-0.39899998903274536</x>
<y>0.4000000059604645</y>
<z>0.824999988079071</z>
<x>-0.7459999918937683</x>
<y>0.38100001215934753</y>
<z>-0.5460000038146973</z>
<x>-0.5320000052452087</x>
<y>-0.8339999914169312</y>
<z>0.1469999998807907</z>
</rotation>
<rmsd>1.2301980257034302</rmsd>
<dmax>2.5135440826416016</dmax>
</indel>