NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GB3A-2G4NF
confEVID 1GB3A-2G4NF
pdbIDA 1GB3
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KFFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB3A</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 347 CA THR A 43 3.270 8.525 24.990 1.00 7.87 C </line>
<line>ATOM 354 CA ASN A 44 4.736 5.021 24.750 1.00 11.76 C </line>
<line>ATOM 362 CA TYR A 45 3.461 2.116 26.779 1.00 8.38 C </line>
<line>ATOM 374 CA ASN A 46 6.081 -0.501 27.711 1.00 8.43 C </line>
<line>ATOM 382 CA ALA A 47 4.064 -3.719 27.952 1.00 9.36 C </line>
<line>ATOM 387 CA GLY A 48 7.170 -5.520 29.233 1.00 9.38 C </line>
<line>ATOM 391 CA ASP A 49 7.346 -3.731 32.580 1.00 8.54 C </line>
<line>ATOM 399 CA ARG A 50 4.002 -1.928 32.658 1.00 11.26 C </line>
<line>ATOM 410 CA SER A 51 5.456 1.567 32.598 1.00 8.10 C </line>
<line>ATOM 416 CA THR A 52 4.713 4.473 30.263 1.00 5.07 C </line>
<line>ATOM 423 CA ASP A 53 6.986 7.159 28.775 1.00 5.48 C </line>
<line>ATOM 431 CA TYR A 54 5.459 10.664 28.801 1.00 6.19 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.89 5.48 6.80 10.54 12.98 14.98 15.18 12.62 9.84 6.66 3.81 </line>
<line>ASN CA 6.98 5.08 5.54 8.60 10.55 12.03 11.71 9.33 6.41 3.77 </line>
<line>TYR CA 9.01 6.47 4.39 6.18 7.16 9.11 8.84 5.98 3.82 </line>
<line>ASN CA 11.24 7.79 5.76 5.34 5.55 5.98 5.36 3.81 </line>
<line>ALA CA 14.48 11.29 8.54 7.17 5.04 5.67 3.81 </line>
<line>GLY CA 16.28 12.69 10.34 8.03 5.89 3.80 </line>
<line>ASP CA 15.00 11.54 8.92 5.63 3.80 </line>
<line>ARG CA 13.25 10.32 6.87 3.79 </line>
<line>SER CA 9.86 6.94 3.80 </line>
<line>THR CA 6.40 3.82 </line>
<line>ASP CA 3.82 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 297</line>
<line>ASN CA 264</line>
<line>TYR CA 227</line>
<line>ASN CA 199</line>
<line>ALA CA 142</line>
<line>GLY CA 128</line>
<line>ASP CA 165</line>
<line>ARG CA 198</line>
<line>SER CA 261</line>
<line>THR CA 322</line>
<line>ASP CA 412</line>
<line>TYR CA 441</line>
</n14>
</entryChain>
<parallel>
<x>54.40599822998047</x>
<y>13.550999641418457</y>
<z>89.54000091552734</z>
</parallel>
<rotation>
<x>-0.3479999899864197</x>
<y>0.42100000381469727</y>
<z>0.8379999995231628</z>
<x>-0.8209999799728394</x>
<y>0.2939999997615814</y>
<z>-0.48899999260902405</z>
<x>-0.4519999921321869</x>
<y>-0.8579999804496765</y>
<z>0.24300000071525574</z>
</rotation>
<rmsd>0.6893870234489441</rmsd>
<dmax>1.2930560111999512</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB3A</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 758 CA ARG A 98 15.879 16.227 38.049 1.00 2.90 C </line>
<line>ATOM 769 CA VAL A 99 16.822 13.198 35.894 1.00 4.72 C </line>
<line>ATOM 776 CA VAL A 100 20.224 14.633 34.911 1.00 4.57 C </line>
<line>ATOM 783 CA ARG A 101 21.186 15.555 38.464 1.00 7.52 C </line>
<line>ATOM 794 CA ASP A 102 21.634 11.797 38.925 1.00 9.36 C </line>
<line>ATOM 802 CA PRO A 103 25.048 10.157 38.198 1.00 11.22 C </line>
<line>ATOM 809 CA GLN A 104 24.339 9.264 34.560 1.00 11.28 C </line>
<line>ATOM 818 CA GLY A 105 23.449 12.795 33.545 1.00 9.59 C </line>
<line>ATOM 822 CA ILE A 106 22.092 13.006 29.973 1.00 7.65 C </line>
<line>ATOM 830 CA ARG A 107 23.047 9.320 29.546 1.00 8.50 C </line>
<line>ATOM 841 CA ALA A 108 19.840 8.506 31.471 1.00 8.16 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.89 13.09 10.69 9.45 11.50 11.00 7.32 5.37 5.59 3.84 </line>
<line>VAL CA 7.12 9.70 7.93 7.04 8.59 9.07 5.86 5.59 3.82 </line>
<line>VAL CA 7.04 8.06 5.52 3.96 6.77 7.36 5.11 3.79 </line>
<line>ARG CA 10.02 11.04 8.91 6.08 8.05 6.64 3.81 </line>
<line>ASP CA 8.34 9.80 9.04 5.76 5.73 3.86 </line>
<line>PRO CA 8.67 8.92 9.19 5.58 3.81 </line>
<line>GLN CA 5.51 5.18 6.33 3.78 </line>
<line>GLY CA 5.98 5.31 3.83 </line>
<line>ILE CA 5.25 3.83 </line>
<line>ARG CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 336</line>
<line>VAL CA 389</line>
<line>VAL CA 340</line>
<line>ARG CA 243</line>
<line>ASP CA 226</line>
<line>PRO CA 174</line>
<line>GLN CA 224</line>
<line>GLY CA 296</line>
<line>ILE CA 385</line>
<line>ARG CA 310</line>
<line>ALA CA 351</line>
</n14>
</entryChain>
<parallel>
<x>19.729000091552734</x>
<y>3.3269999027252197</y>
<z>91.48600006103516</z>
</parallel>
<rotation>
<x>-0.2070000022649765</x>
<y>0.22599999606609344</y>
<z>0.9520000219345093</z>
<x>-0.8809999823570251</x>
<y>0.38100001215934753</y>
<z>-0.28200000524520874</z>
<x>-0.4259999990463257</x>
<y>-0.8970000147819519</y>
<z>0.11999999731779099</z>
</rotation>
<rmsd>1.0101399421691895</rmsd>
<dmax>2.232593059539795</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB3A</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 897 CA ASN A 114 22.149 5.933 20.388 1.00 9.20 C </line>
<line>ATOM 905 CA ARG A 115 21.490 9.125 18.419 1.00 9.64 C </line>
<line>ATOM 916 CA CYS A 116 23.214 12.127 20.018 1.00 6.40 C </line>
<line>ATOM 922 CA GLN A 117 26.350 10.970 21.837 1.00 7.60 C </line>
<line>ATOM 931 CA ASN A 118 29.466 11.736 19.781 1.00 9.20 C </line>
<line>ATOM 939 CA ARG A 119 27.286 13.036 16.963 1.00 7.48 C </line>
<line>ATOM 950 CA ASP A 120 27.380 16.417 15.201 1.00 10.43 C </line>
<line>ATOM 958 CA VAL A 121 24.337 18.031 16.844 1.00 10.88 C </line>
<line>ATOM 965 CA ARG A 122 25.026 21.644 15.785 1.00 16.95 C </line>
<line>ATOM 976 CA GLN A 123 22.232 21.323 13.234 1.00 14.39 C </line>
<line>ATOM 985 CA TYR A 124 19.674 21.451 16.019 1.00 7.92 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.31 16.97 16.62 12.79 12.81 9.41 9.36 6.72 6.30 3.81 </line>
<line>ARG CA 12.69 13.28 13.27 9.48 9.91 7.14 8.50 6.22 3.81 </line>
<line>CYS CA 10.75 11.47 10.57 6.80 7.68 5.17 6.27 3.81 </line>
<line>GLN CA 13.72 14.08 12.34 8.88 8.65 5.38 3.81 </line>
<line>ASN CA 14.30 13.68 11.57 8.63 6.87 3.79 </line>
<line>ARG CA 11.39 10.40 8.98 5.80 3.81 </line>
<line>ASP CA 9.24 7.38 5.76 3.82 </line>
<line>VAL CA 5.84 5.32 3.83 </line>
<line>ARG CA 5.36 3.80 </line>
<line>GLN CA 3.78 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 218</line>
<line>ARG CA 264</line>
<line>CYS CA 308</line>
<line>GLN CA 273</line>
<line>ASN CA 195</line>
<line>ARG CA 219</line>
<line>ASP CA 200</line>
<line>VAL CA 281</line>
<line>ARG CA 235</line>
<line>GLN CA 229</line>
<line>TYR CA 337</line>
</n14>
</entryChain>
<parallel>
<x>19.98200035095215</x>
<y>22.291000366210938</y>
<z>109.41799926757812</z>
</parallel>
<rotation>
<x>-0.3959999978542328</x>
<y>0.3869999945163727</y>
<z>0.8330000042915344</z>
<x>-0.7540000081062317</x>
<y>0.38100001215934753</y>
<z>-0.5350000262260437</z>
<x>-0.5239999890327454</x>
<y>-0.8399999737739563</y>
<z>0.14100000262260437</z>
</rotation>
<rmsd>1.1990820169448853</rmsd>
<dmax>2.39811110496521</dmax>
</indel>