NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GB7A-2G4NF
confEVID 1GB7A-2G4NF
pdbIDA 1GB7
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGALNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB7</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB7A</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 3.439 8.595 25.188 1.00 11.13 C </line>
<line>ATOM 350 CA ASN A 44 4.825 5.064 24.929 1.00 12.61 C </line>
<line>ATOM 358 CA TYR A 45 3.553 2.138 26.974 1.00 11.59 C </line>
<line>ATOM 370 CA ASN A 46 6.089 -0.550 27.846 1.00 10.57 C </line>
<line>ATOM 378 CA ALA A 47 4.099 -3.797 28.118 1.00 10.70 C </line>
<line>ATOM 383 CA GLY A 48 7.111 -5.676 29.476 1.00 8.91 C </line>
<line>ATOM 387 CA ASP A 49 7.250 -3.789 32.748 1.00 10.45 C </line>
<line>ATOM 395 CA ARG A 50 3.946 -1.868 32.814 1.00 14.41 C </line>
<line>ATOM 406 CA SER A 51 5.515 1.617 32.768 1.00 8.95 C </line>
<line>ATOM 412 CA THR A 52 4.810 4.504 30.397 1.00 7.33 C </line>
<line>ATOM 419 CA ASP A 53 7.097 7.210 28.944 1.00 8.02 C </line>
<line>ATOM 427 CA TYR A 54 5.533 10.696 29.032 1.00 7.93 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.86 5.42 6.76 10.51 12.96 15.00 15.35 12.75 9.89 6.70 3.80 </line>
<line>ASN CA 7.00 5.09 5.50 8.59 10.54 12.06 11.88 9.45 6.45 3.79 </line>
<line>TYR CA 9.02 6.49 4.35 6.14 7.09 9.06 8.94 6.07 3.80 </line>
<line>ASN CA 11.32 7.90 5.80 5.41 5.57 5.99 5.48 3.82 </line>
<line>ALA CA 14.59 11.44 8.64 7.28 5.08 5.60 3.80 </line>
<line>GLY CA 16.45 12.90 10.48 8.16 5.97 3.78 </line>
<line>ASP CA 15.05 11.64 8.96 5.68 3.82 </line>
<line>ARG CA 13.22 10.36 6.87 3.82 </line>
<line>SER CA 9.82 6.96 3.80 </line>
<line>THR CA 6.38 3.83 </line>
<line>ASP CA 3.82 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 295</line>
<line>ASN CA 264</line>
<line>TYR CA 227</line>
<line>ASN CA 197</line>
<line>ALA CA 141</line>
<line>GLY CA 126</line>
<line>ASP CA 166</line>
<line>ARG CA 200</line>
<line>SER CA 263</line>
<line>THR CA 320</line>
<line>ASP CA 413</line>
<line>TYR CA 438</line>
</n14>
</entryChain>
<parallel>
<x>54.345001220703125</x>
<y>13.531999588012695</y>
<z>89.37300109863281</z>
</parallel>
<rotation>
<x>-0.3580000102519989</x>
<y>0.4269999861717224</y>
<z>0.8299999833106995</z>
<x>-0.8159999847412109</x>
<y>0.289000004529953</y>
<z>-0.5009999871253967</z>
<x>-0.45399999618530273</x>
<y>-0.8569999933242798</y>
<z>0.24500000476837158</z>
</rotation>
<rmsd>0.7096549868583679</rmsd>
<dmax>1.3399250507354736</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB7</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB7A</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 755 CA ARG A 98 16.098 16.214 38.183 1.00 6.39 C </line>
<line>ATOM 766 CA VAL A 99 16.930 13.182 36.006 1.00 7.93 C </line>
<line>ATOM 773 CA VAL A 100 20.334 14.547 34.985 1.00 10.11 C </line>
<line>ATOM 780 CA ARG A 101 21.322 15.483 38.530 1.00 12.02 C </line>
<line>ATOM 791 CA ASP A 102 21.782 11.718 39.000 1.00 13.40 C </line>
<line>ATOM 799 CA PRO A 103 25.113 9.906 38.151 1.00 12.66 C </line>
<line>ATOM 806 CA GLN A 104 24.402 9.192 34.466 1.00 13.19 C </line>
<line>ATOM 815 CA GLY A 105 23.685 12.814 33.569 1.00 11.96 C </line>
<line>ATOM 819 CA ILE A 106 22.263 13.074 30.032 1.00 10.78 C </line>
<line>ATOM 827 CA ARG A 107 23.166 9.387 29.537 1.00 12.63 C </line>
<line>ATOM 838 CA ALA A 108 20.102 8.427 31.582 1.00 12.32 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.97 13.09 10.69 9.51 11.49 11.00 7.29 5.29 5.56 3.82 </line>
<line>VAL CA 7.23 9.75 8.01 7.19 8.61 9.07 5.89 5.56 3.81 </line>
<line>VAL CA 7.01 8.02 5.52 4.03 6.74 7.38 5.12 3.80 </line>
<line>ARG CA 9.98 11.02 8.88 6.11 8.10 6.75 3.82 </line>
<line>ASP CA 8.29 9.84 9.08 5.86 5.81 3.89 </line>
<line>PRO CA 8.39 8.85 9.17 5.61 3.82 </line>
<line>GLN CA 5.23 5.09 6.27 3.80 </line>
<line>GLY CA 6.00 5.32 3.82 </line>
<line>ILE CA 5.35 3.83 </line>
<line>ARG CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 334</line>
<line>VAL CA 390</line>
<line>VAL CA 341</line>
<line>ARG CA 244</line>
<line>ASP CA 228</line>
<line>PRO CA 174</line>
<line>GLN CA 226</line>
<line>GLY CA 294</line>
<line>ILE CA 387</line>
<line>ARG CA 311</line>
<line>ALA CA 343</line>
</n14>
</entryChain>
<parallel>
<x>19.579999923706055</x>
<y>3.3580000400543213</y>
<z>91.42900085449219</z>
</parallel>
<rotation>
<x>-0.2160000056028366</x>
<y>0.2280000001192093</y>
<z>0.949999988079071</z>
<x>-0.8709999918937683</x>
<y>0.39500001072883606</y>
<z>-0.2930000126361847</z>
<x>-0.44200000166893005</x>
<y>-0.8899999856948853</y>
<z>0.11299999803304672</z>
</rotation>
<rmsd>1.0233310461044312</rmsd>
<dmax>2.244673013687134</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB7</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB7A</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 894 CA ASN A 114 22.218 6.028 20.481 1.00 11.90 C </line>
<line>ATOM 902 CA ARG A 115 21.630 9.178 18.445 1.00 13.04 C </line>
<line>ATOM 913 CA CYS A 116 23.329 12.154 20.127 1.00 10.20 C </line>
<line>ATOM 919 CA GLN A 117 26.454 10.957 21.944 1.00 10.00 C </line>
<line>ATOM 928 CA ASN A 118 29.606 11.623 19.918 1.00 12.65 C </line>
<line>ATOM 936 CA ARG A 119 27.463 13.012 17.105 1.00 11.20 C </line>
<line>ATOM 947 CA ASP A 120 27.547 16.416 15.387 1.00 17.32 C </line>
<line>ATOM 955 CA VAL A 121 24.508 18.051 17.047 1.00 17.42 C </line>
<line>ATOM 962 CA ARG A 122 25.265 21.634 15.932 1.00 20.91 C </line>
<line>ATOM 973 CA GLN A 123 22.426 21.377 13.411 1.00 16.56 C </line>
<line>ATOM 982 CA TYR A 124 19.818 21.303 16.175 1.00 11.42 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.05 16.90 16.54 12.71 12.74 9.36 9.28 6.66 6.24 3.80 </line>
<line>ARG CA 12.47 13.22 13.22 9.43 9.84 7.11 8.47 6.22 3.82 </line>
<line>CYS CA 10.57 11.44 10.55 6.76 7.64 5.19 6.30 3.81 </line>
<line>GLN CA 13.58 14.06 12.31 8.84 8.60 5.35 3.81 </line>
<line>ASN CA 14.27 13.75 11.62 8.69 6.91 3.80 </line>
<line>ARG CA 11.32 10.44 8.97 5.84 3.81 </line>
<line>ASP CA 9.18 7.40 5.72 3.83 </line>
<line>VAL CA 5.77 5.35 3.83 </line>
<line>ARG CA 5.46 3.81 </line>
<line>GLN CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 220</line>
<line>ARG CA 261</line>
<line>CYS CA 309</line>
<line>GLN CA 274</line>
<line>ASN CA 192</line>
<line>ARG CA 221</line>
<line>ASP CA 200</line>
<line>VAL CA 284</line>
<line>ARG CA 232</line>
<line>GLN CA 231</line>
<line>TYR CA 336</line>
</n14>
</entryChain>
<parallel>
<x>19.839000701904297</x>
<y>22.284000396728516</y>
<z>109.29199981689453</z>
</parallel>
<rotation>
<x>-0.39899998903274536</x>
<y>0.3959999978542328</y>
<z>0.8270000219345093</z>
<x>-0.7480000257492065</x>
<y>0.38100001215934753</y>
<z>-0.5440000295639038</z>
<x>-0.531000018119812</x>
<y>-0.8349999785423279</y>
<z>0.14399999380111694</z>
</rotation>
<rmsd>1.2011640071868896</rmsd>
<dmax>2.439668893814087</dmax>
</indel>