NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GB8A-2G4NF
confEVID 1GB8A-2G4NF
pdbIDA 1GB8
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAMNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB8A</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 3.306 8.559 25.349 1.00 16.47 C </line>
<line>ATOM 350 CA ASN A 44 4.648 5.035 25.147 1.00 15.78 C </line>
<line>ATOM 358 CA TYR A 45 3.421 2.160 27.262 1.00 12.53 C </line>
<line>ATOM 370 CA ASN A 46 6.003 -0.459 28.155 1.00 12.40 C </line>
<line>ATOM 378 CA ALA A 47 3.963 -3.658 28.404 1.00 11.17 C </line>
<line>ATOM 383 CA GLY A 48 7.014 -5.545 29.586 1.00 10.60 C </line>
<line>ATOM 387 CA ASP A 49 7.242 -3.783 32.931 1.00 11.42 C </line>
<line>ATOM 395 CA ARG A 50 3.955 -1.869 33.157 1.00 15.81 C </line>
<line>ATOM 406 CA SER A 51 5.513 1.601 33.006 1.00 11.72 C </line>
<line>ATOM 412 CA THR A 52 4.732 4.501 30.648 1.00 8.70 C </line>
<line>ATOM 419 CA ASP A 53 6.969 7.206 29.159 1.00 7.50 C </line>
<line>ATOM 427 CA TYR A 54 5.500 10.713 29.203 1.00 7.48 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.93 5.46 6.82 10.58 13.04 15.01 15.19 12.61 9.82 6.68 3.78 </line>
<line>ASN CA 7.03 5.12 5.53 8.62 10.60 12.04 11.71 9.31 6.41 3.77 </line>
<line>TYR CA 9.01 6.45 4.32 6.14 7.16 9.06 8.81 5.95 3.78 </line>
<line>ASN CA 11.23 7.79 5.69 5.29 5.59 5.95 5.38 3.80 </line>
<line>ALA CA 14.48 11.30 8.50 7.16 5.08 5.59 3.78 </line>
<line>GLY CA 16.33 12.76 10.36 8.06 5.97 3.79 </line>
<line>ASP CA 15.07 11.62 8.95 5.66 3.81 </line>
<line>ARG CA 13.28 10.36 6.89 3.81 </line>
<line>SER CA 9.87 6.95 3.82 </line>
<line>THR CA 6.42 3.81 </line>
<line>ASP CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 293</line>
<line>ASN CA 264</line>
<line>TYR CA 228</line>
<line>ASN CA 201</line>
<line>ALA CA 144</line>
<line>GLY CA 126</line>
<line>ASP CA 165</line>
<line>ARG CA 200</line>
<line>SER CA 262</line>
<line>THR CA 321</line>
<line>ASP CA 412</line>
<line>TYR CA 438</line>
</n14>
</entryChain>
<parallel>
<x>54.4370002746582</x>
<y>13.51200008392334</y>
<z>89.11199951171875</z>
</parallel>
<rotation>
<x>-0.3659999966621399</x>
<y>0.41200000047683716</y>
<z>0.8339999914169312</z>
<x>-0.8199999928474426</x>
<y>0.2809999883174896</y>
<z>-0.49900001287460327</z>
<x>-0.4399999976158142</x>
<y>-0.8669999837875366</y>
<z>0.23499999940395355</z>
</rotation>
<rmsd>0.7009519934654236</rmsd>
<dmax>1.3157780170440674</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB8A</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 755 CA ARG A 98 16.078 16.270 38.242 1.00 6.30 C </line>
<line>ATOM 766 CA VAL A 99 16.872 13.238 36.076 1.00 5.99 C </line>
<line>ATOM 773 CA VAL A 100 20.280 14.658 35.180 1.00 9.13 C </line>
<line>ATOM 780 CA ARG A 101 21.236 15.569 38.740 1.00 11.22 C </line>
<line>ATOM 791 CA ASP A 102 21.775 11.808 39.072 1.00 12.73 C </line>
<line>ATOM 799 CA PRO A 103 25.144 10.065 38.314 1.00 13.90 C </line>
<line>ATOM 806 CA GLN A 104 24.348 9.104 34.705 1.00 11.93 C </line>
<line>ATOM 815 CA GLY A 105 23.523 12.658 33.719 1.00 10.09 C </line>
<line>ATOM 819 CA ILE A 106 22.054 12.928 30.196 1.00 9.67 C </line>
<line>ATOM 827 CA ARG A 107 23.038 9.282 29.637 1.00 9.90 C </line>
<line>ATOM 838 CA ALA A 108 19.902 8.397 31.643 1.00 9.70 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.96 13.09 10.57 9.43 11.50 10.99 7.28 5.23 5.44 3.81 </line>
<line>VAL CA 7.23 9.75 7.84 7.08 8.65 9.14 5.92 5.62 3.80 </line>
<line>VAL CA 7.20 8.20 5.57 4.08 6.90 7.39 5.05 3.80 </line>
<line>ARG CA 10.18 11.21 8.98 6.24 8.23 6.76 3.81 </line>
<line>ASP CA 8.39 9.85 8.95 5.69 5.74 3.87 </line>
<line>PRO CA 8.65 8.96 9.15 5.52 3.82 </line>
<line>GLN CA 5.44 5.24 6.34 3.78 </line>
<line>GLY CA 5.96 5.32 3.83 </line>
<line>ILE CA 5.22 3.82 </line>
<line>ARG CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 339</line>
<line>VAL CA 392</line>
<line>VAL CA 342</line>
<line>ARG CA 241</line>
<line>ASP CA 230</line>
<line>PRO CA 175</line>
<line>GLN CA 224</line>
<line>GLY CA 298</line>
<line>ILE CA 388</line>
<line>ARG CA 316</line>
<line>ALA CA 347</line>
</n14>
</entryChain>
<parallel>
<x>19.660999298095703</x>
<y>3.3570001125335693</y>
<z>91.28399658203125</z>
</parallel>
<rotation>
<x>-0.22499999403953552</x>
<y>0.22300000488758087</y>
<z>0.9490000009536743</z>
<x>-0.878000020980835</x>
<y>0.375</y>
<z>-0.29600000381469727</z>
<x>-0.421999990940094</x>
<y>-0.8999999761581421</y>
<z>0.1120000034570694</z>
</rotation>
<rmsd>1.0363800525665283</rmsd>
<dmax>2.285322904586792</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GB8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GB8A</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 894 CA ASN A 114 22.033 5.883 20.604 1.00 8.77 C </line>
<line>ATOM 902 CA ARG A 115 21.413 9.065 18.626 1.00 11.28 C </line>
<line>ATOM 913 CA CYS A 116 23.208 11.984 20.228 1.00 9.19 C </line>
<line>ATOM 919 CA GLN A 117 26.314 10.799 22.051 1.00 7.42 C </line>
<line>ATOM 928 CA ASN A 118 29.549 11.469 20.145 1.00 12.37 C </line>
<line>ATOM 936 CA ARG A 119 27.552 12.920 17.281 1.00 11.89 C </line>
<line>ATOM 947 CA ASP A 120 27.466 16.330 15.564 1.00 16.09 C </line>
<line>ATOM 955 CA VAL A 121 24.379 17.810 17.263 1.00 15.43 C </line>
<line>ATOM 962 CA ARG A 122 25.123 21.380 16.110 1.00 21.18 C </line>
<line>ATOM 973 CA GLN A 123 22.354 21.182 13.509 1.00 17.67 C </line>
<line>ATOM 982 CA TYR A 124 19.684 21.153 16.221 1.00 13.06 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.06 16.87 16.43 12.61 12.81 9.54 9.38 6.68 6.22 3.80 </line>
<line>ARG CA 12.45 13.19 13.11 9.33 9.94 7.37 8.62 6.23 3.78 </line>
<line>CYS CA 10.61 11.42 10.44 6.64 7.67 5.33 6.36 3.79 </line>
<line>GLN CA 13.61 14.02 12.19 8.71 8.60 5.37 3.81 </line>
<line>ASN CA 14.37 13.79 11.58 8.67 7.00 3.78 </line>
<line>ARG CA 11.44 10.46 8.88 5.83 3.82 </line>
<line>ASP CA 9.18 7.34 5.59 3.82 </line>
<line>VAL CA 5.86 5.44 3.82 </line>
<line>ARG CA 5.44 3.80 </line>
<line>GLN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 220</line>
<line>ARG CA 264</line>
<line>CYS CA 307</line>
<line>GLN CA 274</line>
<line>ASN CA 194</line>
<line>ARG CA 217</line>
<line>ASP CA 199</line>
<line>VAL CA 287</line>
<line>ARG CA 235</line>
<line>GLN CA 232</line>
<line>TYR CA 337</line>
</n14>
</entryChain>
<parallel>
<x>19.972999572753906</x>
<y>22.448999404907227</y>
<z>109.12799835205078</z>
</parallel>
<rotation>
<x>-0.4000000059604645</x>
<y>0.4000000059604645</y>
<z>0.824999988079071</z>
<x>-0.7450000047683716</x>
<y>0.38199999928474426</y>
<z>-0.546999990940094</z>
<x>-0.5339999794960022</x>
<y>-0.8330000042915344</y>
<z>0.1459999978542328</z>
</rotation>
<rmsd>1.234652042388916</rmsd>
<dmax>2.5124740600585938</dmax>
</indel>