NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GBAA-2G52A
confEVID 1GBAA-2G52A
pdbIDA 1GBA
pdbIDB 2G52
pdbChainA A
pdbChainB A
identity 0.136899992823601
indelSize 2
alignment <alignment>
<seq1>--------ANIVGGIEYSI--NNASLCSVGFSVTRGATKGFVTAGHCGT----VNATARIGG------AVVGTFAARVF------PGNDRAWVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTT------------GYQCGTITAKN-----------VTANYAEGAVRGLTQG-----NACAGRGDSGGSWITSAGQAQGVMSGANVQSNGNNCGIPASQRSSLFERL---QPILSQYGLSLVTG</seq1>
<seq2>IVGGTSASAGDFPFI-VSISRNGGPWCGG-SLLNA---NTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLS---TSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT---------NQMFCAGVSSGGKDSCQGDSGGPIVDSSNTLIGAVSWGN-----GCAR---PNYSGVYASVGALRSFIDTYA------</seq2>
<ss_1>-------- EEEEEEEEE-- EEEEEEEEEEE EEEEEE GGG ---- EEEEE ------EEEEEEEEEE ------ EEEEEEE EEE EEE EEEEEEE ------------EEEEEEEEE -----------EEEEE EEE EEEE----- EEEE EEEEEEEEE EEEEEEE---HHHH </ss_1>
<ss_2> EE-EEEEE EEE-EEEEE---EEEEE GGGEEEEE EEEE EEEEE EEEEE --- EEEEEEE EEEEEEEEE HHHHHHHH HHHH --------- EEEEE EEE EEEE EEEEEEE ----- --- EEEEEHHHHHHHHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GBA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GBAA</entryIDChain>
<sequence>GLTQG-----NACAG</sequence>
<secondary-structure> EEEE----- </secondary-structure>
<atom-coordinate>
<line>ATOM 910 CA GLY A 179 25.544 37.254 26.459 1.00 12.12 C </line>
<line>ATOM 914 CA LEU A 180 24.904 37.028 22.695 1.00 12.56 C </line>
<line>ATOM 922 CA THR A 181 27.241 38.382 20.004 1.00 10.24 C </line>
<line>ATOM 929 CA GLN A 182 25.833 40.632 17.407 1.00 13.10 C </line>
<line>ATOM 938 CA GLY A 183 26.765 40.638 13.711 1.00 6.19 C </line>
<line>ATOM 942 CA ASN A 184 25.214 42.441 10.708 1.00 10.40 C </line>
<line>ATOM 950 CA ALA A 185 25.173 39.477 8.329 1.00 10.04 C </line>
<line>ATOM 955 CA CYS A 189 21.456 39.062 7.469 1.00 7.70 C </line>
<line>ATOM 961 CA ALA A 190 19.261 36.144 8.488 1.00 8.44 C </line>
<line>ATOM 966 CA GLY A 191 15.672 34.897 8.580 1.00 6.63 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ALA CYS ALA ASN GLY GLN THR LEU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 20.56 19.07 19.51 18.27 16.59 13.25 9.67 6.77 3.82 </line>
<line>LEU CA 17.00 15.31 15.74 14.58 13.16 9.86 6.47 3.81 </line>
<line>THR CA 16.63 14.19 13.82 11.91 10.34 6.70 3.71 </line>
<line>GLN CA 14.63 11.95 10.97 9.17 6.97 3.81 </line>
<line>GLY CA 13.50 10.19 8.34 5.73 3.83 </line>
<line>ASN CA 12.35 8.95 6.00 3.80 </line>
<line>ALA CA 10.55 6.79 3.84 </line>
<line>CYS CA 7.21 3.79 </line>
<line>ALA CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLY CA 306</line>
<line>LEU CA 399</line>
<line>THR CA 409</line>
<line>GLN CA 400</line>
<line>GLY CA 416</line>
<line>ASN CA 364</line>
<line>ALA CA 406</line>
<line>CYS CA 390</line>
<line>ALA CA 413</line>
<line>GLY CA 353</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2G52</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G52A</entryIDChain>
<sequence>QMFCAGVSSGGKDSC</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1112 CA GLN A 177 5.567 -13.672 13.643 1.00 26.14 C </line>
<line>ATOM 1121 CA MET A 178 4.638 -11.631 10.570 1.00 24.83 C </line>
<line>ATOM 1129 CA PHE A 179 1.512 -11.281 8.535 1.00 24.02 C </line>
<line>ATOM 1140 CA CYS A 180 0.791 -9.550 5.277 1.00 24.57 C </line>
<line>ATOM 1146 CA ALA A 181 -1.805 -7.141 3.963 1.00 25.65 C </line>
<line>ATOM 1151 CA GLY A 182 -2.267 -5.254 0.703 1.00 26.33 C </line>
<line>ATOM 1155 CA VAL A 183 -3.850 -5.266 -2.754 1.00 29.65 C </line>
<line>ATOM 1162 CA SER A 184 -2.572 -7.426 -5.532 1.00 34.07 C </line>
<line>ATOM 1168 CA SER A 185 -2.775 -4.601 -8.090 1.00 35.84 C </line>
<line>ATOM 1174 CA GLY A 186 -0.964 -2.292 -5.566 1.00 34.28 C </line>
<line>ATOM 1178 CA GLY A 187 -1.727 1.302 -4.561 1.00 30.04 C </line>
<line>ATOM 1182 CA LYS A 188 -2.849 0.869 -0.938 1.00 27.06 C </line>
<line>ATOM 1191 CA ASP A 189 -0.271 0.364 1.854 1.00 26.11 C </line>
<line>ATOM 1199 CA SER A 190 1.654 1.743 4.855 1.00 27.38 C </line>
<line>ATOM 1205 CA CYS A 191 4.977 3.354 3.917 1.00 25.83 C </line>
</atom-coordinate>
<distance-map>
<line> CYS SER ASP LYS GLY GLY SER SER VAL GLY ALA CYS PHE MET GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 19.62 18.17 19.24 22.25 24.67 23.26 24.98 21.75 20.69 17.31 13.81 10.48 6.95 3.80 </line>
<line>MET CA 16.40 14.85 15.62 18.57 20.90 19.47 21.27 18.14 17.03 13.63 10.26 6.87 3.75 </line>
<line>PHE CA 15.73 13.53 13.54 16.01 18.45 16.90 18.42 15.15 13.87 10.58 7.00 3.76 </line>
<line>CYS CA 13.63 11.33 10.54 12.67 14.86 13.17 14.69 11.52 10.22 6.98 3.78 </line>
<line>ALA CA 12.50 9.58 7.95 9.45 12.00 10.72 12.36 9.53 7.27 3.79 </line>
<line>GLY CA 11.70 9.03 6.07 6.37 8.43 7.05 8.83 6.61 3.80 </line>
<line>VAL CA 14.03 11.72 8.11 6.48 7.14 5.01 5.48 3.74 </line>
<line>SER CA 16.20 14.49 10.98 9.49 8.82 5.38 3.82 </line>
<line>SER CA 16.36 15.08 11.39 9.00 6.96 3.87 </line>
<line>GLY CA 12.53 11.48 7.91 5.91 3.81 </line>
<line>GLY CA 11.00 10.01 6.64 3.82 </line>
<line>LYS CA 9.54 7.39 3.83 </line>
<line>ASP CA 6.38 3.82 </line>
<line>SER CA 3.81 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLN CA 400</line>
<line>MET CA 465</line>
<line>PHE CA 471</line>
<line>CYS CA 498</line>
<line>ALA CA 484</line>
<line>GLY CA 416</line>
<line>VAL CA 300</line>
<line>SER CA 248</line>
<line>SER CA 172</line>
<line>GLY CA 258</line>
<line>GLY CA 255</line>
<line>LYS CA 342</line>
<line>ASP CA 453</line>
<line>SER CA 497</line>
<line>CYS CA 435</line>
</n14>
</entryChain>
<parallel>
<x>24.534000396728516</x>
<y>45.707000732421875</y>
<z>11.055000305175781</z>
</parallel>
<rotation>
<x>-0.8410000205039978</x>
<y>0.26899999380111694</y>
<z>0.4699999988079071</z>
<x>-0.5410000085830688</x>
<y>-0.4000000059604645</y>
<z>-0.7390000224113464</z>
<x>-0.010999999940395355</x>
<y>-0.8759999871253967</y>
<z>0.4830000102519989</z>
</rotation>
<rmsd>2.9517478942871094</rmsd>
<dmax>6.617970943450928</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GBA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GBAA</entryIDChain>
<sequence>LFERL---QPILS</sequence>
<secondary-structure>EEEEE---HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1240 CA LEU A 227 22.609 37.403 17.166 1.00 8.33 C </line>
<line>ATOM 1248 CA PHE A 228 24.395 34.196 17.879 1.00 4.34 C </line>
<line>ATOM 1259 CA GLU A 229 25.236 32.192 20.937 1.00 5.44 C </line>
<line>ATOM 1268 CA ARG A 230 29.019 31.740 21.328 1.00 6.65 C </line>
<line>ATOM 1279 CA LEU A 231 30.233 28.188 20.719 1.00 6.17 C </line>
<line>ATOM 1287 CA GLN A 232 32.929 27.888 23.469 1.00 10.27 C </line>
<line>ATOM 1296 CA PRO A 233 30.571 27.806 26.494 1.00 10.41 C </line>
<line>ATOM 1303 CA ILE A 234 28.364 25.266 24.666 1.00 8.02 C </line>
<line>ATOM 1311 CA LEU A 235 31.353 22.976 24.104 1.00 6.04 C </line>
<line>ATOM 1319 CA SER A 236 32.576 23.086 27.690 1.00 6.39 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU ILE PRO GLN LEU ARG GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 20.37 18.24 15.38 15.57 15.39 12.48 9.51 6.95 3.74 </line>
<line>PHE CA 16.93 14.60 11.90 12.38 11.99 8.85 6.27 3.75 </line>
<line>GLU CA 13.51 11.51 8.47 8.86 9.17 6.41 3.83 </line>
<line>ARG CA 11.31 9.48 7.31 6.68 5.89 3.80 </line>
<line>LEU CA 8.95 6.31 5.25 5.80 3.86 </line>
<line>GLN CA 6.40 5.20 5.40 3.84 </line>
<line>PRO CA 5.27 5.45 3.83 </line>
<line>ILE CA 5.62 3.81 </line>
<line>LEU CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>LEU CA 505</line>
<line>PHE CA 565</line>
<line>GLU CA 513</line>
<line>ARG CA 472</line>
<line>LEU CA 466</line>
<line>GLN CA 338</line>
<line>PRO CA 310</line>
<line>ILE CA 390</line>
<line>LEU CA 348</line>
<line>SER CA 234</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2G52</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G52A</entryIDChain>
<sequence>VYASVGALRSFID</sequence>
<secondary-structure>EEEEHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1430 CA VAL A 224 4.375 -6.871 6.230 1.00 23.83 C </line>
<line>ATOM 1437 CA TYR A 225 3.270 -6.505 9.850 1.00 22.80 C </line>
<line>ATOM 1449 CA ALA A 226 4.507 -7.721 13.164 1.00 25.67 C </line>
<line>ATOM 1454 CA SER A 227 1.820 -10.112 14.559 1.00 26.51 C </line>
<line>ATOM 1460 CA VAL A 228 0.279 -9.206 17.937 1.00 26.78 C </line>
<line>ATOM 1467 CA GLY A 229 -1.395 -12.663 18.198 1.00 27.14 C </line>
<line>ATOM 1471 CA ALA A 230 1.995 -14.406 17.748 1.00 25.33 C </line>
<line>ATOM 1476 CA LEU A 231 3.882 -12.049 20.125 1.00 27.43 C </line>
<line>ATOM 1484 CA ARG A 232 1.360 -11.741 23.066 1.00 28.34 C </line>
<line>ATOM 1495 CA SER A 233 3.866 -13.357 25.441 1.00 30.59 C </line>
<line>ATOM 1501 CA PHE A 234 6.359 -10.586 24.918 1.00 29.30 C </line>
<line>ATOM 1512 CA ILE A 235 3.625 -7.913 25.031 1.00 29.41 C </line>
<line>ATOM 1520 CA ASP A 236 1.715 -9.224 28.081 1.00 32.04 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ILE PHE SER ARG LEU ALA GLY VAL SER ALA TYR VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 22.14 18.84 19.16 20.28 17.78 14.84 13.97 14.49 12.62 9.30 6.99 3.80 </line>
<line>TYR CA 18.50 15.25 15.91 17.04 14.34 11.69 11.24 11.37 9.04 6.11 3.74 </line>
<line>ALA CA 15.25 11.90 12.24 13.52 11.14 8.22 8.49 9.20 6.55 3.86 </line>
<line>SER CA 13.55 10.85 11.32 11.54 8.67 6.24 5.35 5.49 3.82 </line>
<line>VAL CA 10.25 7.95 9.36 9.30 5.82 5.08 5.48 3.85 </line>
<line>GLY CA 10.92 9.72 10.47 8.98 5.67 5.65 3.84 </line>
<line>ALA CA 11.56 9.89 9.22 7.99 5.98 3.84 </line>
<line>LEU CA 8.72 6.42 5.59 5.47 3.89 </line>
<line>ARG CA 5.62 4.86 5.45 3.81 </line>
<line>SER CA 5.36 5.46 3.76 </line>
<line>PHE CA 5.78 3.83 </line>
<line>ILE CA 3.83 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>VAL CA 550</line>
<line>TYR CA 556</line>
<line>ALA CA 536</line>
<line>SER CA 496</line>
<line>VAL CA 453</line>
<line>GLY CA 328</line>
<line>ALA CA 317</line>
<line>LEU CA 371</line>
<line>ARG CA 312</line>
<line>SER CA 234</line>
<line>PHE CA 301</line>
<line>ILE CA 362</line>
<line>ASP CA 260</line>
</n14>
</entryChain>
<parallel>
<x>24.690000534057617</x>
<y>40.09700012207031</y>
<z>4.686999797821045</z>
</parallel>
<rotation>
<x>-0.8009999990463257</x>
<y>-0.10199999809265137</y>
<z>0.5899999737739563</z>
<x>-0.46700000762939453</x>
<y>-0.5090000033378601</y>
<z>-0.7229999899864197</z>
<x>0.37400001287460327</x>
<y>-0.8550000190734863</y>
<z>0.36000001430511475</z>
</rotation>
<rmsd>2.0780999660491943</rmsd>
<dmax>3.466865062713623</dmax>
</indel>