NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GBOA-2G4NF
confEVID 1GBOA-2G4NF
pdbIDA 1GBO
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWGAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GBO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GBOA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 2.889 8.596 25.309 1.00 19.70 C </line>
<line>ATOM 350 CA ASN A 44 4.357 5.129 25.099 1.00 15.83 C </line>
<line>ATOM 358 CA TYR A 45 3.192 2.191 27.193 1.00 11.42 C </line>
<line>ATOM 370 CA ASN A 46 5.908 -0.345 28.022 1.00 9.15 C </line>
<line>ATOM 378 CA ALA A 47 4.090 -3.686 28.222 1.00 10.50 C </line>
<line>ATOM 383 CA GLY A 48 7.260 -5.347 29.431 1.00 7.16 C </line>
<line>ATOM 387 CA ASP A 49 7.292 -3.669 32.828 1.00 8.30 C </line>
<line>ATOM 395 CA ARG A 50 3.922 -1.881 33.020 1.00 9.98 C </line>
<line>ATOM 406 CA SER A 51 5.287 1.654 32.919 1.00 7.32 C </line>
<line>ATOM 412 CA THR A 52 4.573 4.541 30.544 1.00 5.10 C </line>
<line>ATOM 419 CA ASP A 53 6.754 7.242 28.982 1.00 2.00 C </line>
<line>ATOM 427 CA TYR A 54 5.217 10.737 28.986 1.00 4.49 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.85 5.50 6.83 10.58 13.05 15.04 15.18 12.68 9.82 6.68 3.77 </line>
<line>ASN CA 6.88 5.03 5.48 8.61 10.59 12.07 11.70 9.36 6.40 3.79 </line>
<line>TYR CA 8.96 6.43 4.32 6.12 7.15 9.11 8.85 6.03 3.81 </line>
<line>ASN CA 11.15 7.69 5.66 5.33 5.59 6.01 5.37 3.81 </line>
<line>ALA CA 14.49 11.27 8.56 7.21 5.13 5.61 3.78 </line>
<line>GLY CA 16.22 12.61 10.31 8.07 6.00 3.79 </line>
<line>ASP CA 15.05 11.58 8.95 5.69 3.82 </line>
<line>ARG CA 13.31 10.37 6.91 3.79 </line>
<line>SER CA 9.90 6.99 3.81 </line>
<line>THR CA 6.42 3.81 </line>
<line>ASP CA 3.82 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 293</line>
<line>ASN CA 266</line>
<line>TYR CA 232</line>
<line>ASN CA 203</line>
<line>ALA CA 145</line>
<line>GLY CA 126</line>
<line>ASP CA 166</line>
<line>ARG CA 198</line>
<line>SER CA 262</line>
<line>THR CA 323</line>
<line>ASP CA 411</line>
<line>TYR CA 440</line>
</n14>
</entryChain>
<parallel>
<x>54.60200119018555</x>
<y>13.470000267028809</y>
<z>89.21199798583984</z>
</parallel>
<rotation>
<x>-0.33399999141693115</x>
<y>0.4009999930858612</y>
<z>0.8529999852180481</z>
<x>-0.8289999961853027</x>
<y>0.3059999942779541</y>
<z>-0.46799999475479126</z>
<x>-0.4490000009536743</x>
<y>-0.8629999756813049</y>
<z>0.23000000417232513</z>
</rotation>
<rmsd>0.7297589778900146</rmsd>
<dmax>1.3745650053024292</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GBO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GBOA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 754 CA ARG A 98 15.756 16.347 38.102 1.00 5.18 C </line>
<line>ATOM 765 CA VAL A 99 16.621 13.265 35.999 1.00 6.89 C </line>
<line>ATOM 772 CA VAL A 100 20.083 14.576 35.093 1.00 6.27 C </line>
<line>ATOM 779 CA ARG A 101 20.934 15.497 38.687 1.00 9.13 C </line>
<line>ATOM 790 CA ASP A 102 21.428 11.729 39.115 1.00 8.29 C </line>
<line>ATOM 798 CA PRO A 103 24.836 10.082 38.260 1.00 8.13 C </line>
<line>ATOM 805 CA GLN A 104 24.049 9.090 34.642 1.00 9.40 C </line>
<line>ATOM 814 CA GLY A 105 23.106 12.615 33.642 1.00 7.22 C </line>
<line>ATOM 818 CA ILE A 106 21.813 12.829 30.055 1.00 7.81 C </line>
<line>ATOM 826 CA ARG A 107 22.737 9.145 29.767 1.00 10.88 C </line>
<line>ATOM 837 CA ALA A 108 19.466 8.228 31.528 1.00 8.01 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.09 13.04 10.67 9.37 11.55 11.03 7.38 5.28 5.56 3.83 </line>
<line>VAL CA 7.31 9.65 7.90 6.93 8.63 9.10 5.93 5.55 3.81 </line>
<line>VAL CA 7.31 8.06 5.61 3.88 6.78 7.27 5.11 3.81 </line>
<line>ARG CA 10.31 11.10 9.08 6.20 8.19 6.69 3.82 </line>
<line>ASP CA 8.58 9.79 9.13 5.79 5.82 3.88 </line>
<line>PRO CA 8.81 8.80 9.17 5.54 3.83 </line>
<line>GLN CA 5.61 5.05 6.33 3.78 </line>
<line>GLY CA 6.08 5.21 3.82 </line>
<line>ILE CA 5.37 3.81 </line>
<line>ARG CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 337</line>
<line>VAL CA 388</line>
<line>VAL CA 339</line>
<line>ARG CA 238</line>
<line>ASP CA 227</line>
<line>PRO CA 174</line>
<line>GLN CA 221</line>
<line>GLY CA 298</line>
<line>ILE CA 387</line>
<line>ARG CA 314</line>
<line>ALA CA 347</line>
</n14>
</entryChain>
<parallel>
<x>19.95800018310547</x>
<y>3.3929998874664307</y>
<z>91.35900115966797</z>
</parallel>
<rotation>
<x>-0.2329999953508377</x>
<y>0.23399999737739563</y>
<z>0.9440000057220459</z>
<x>-0.8769999742507935</x>
<y>0.36800000071525574</y>
<z>-0.30799999833106995</z>
<x>-0.4189999997615814</x>
<y>-0.8999999761581421</y>
<z>0.11900000274181366</z>
</rotation>
<rmsd>1.0411189794540405</rmsd>
<dmax>2.3096909523010254</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GBO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GBOA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 890 CA ASN A 114 21.754 5.740 20.696 1.00 6.06 C </line>
<line>ATOM 898 CA ARG A 115 21.143 8.872 18.583 1.00 8.29 C </line>
<line>ATOM 909 CA CYS A 116 22.922 11.864 20.208 1.00 6.98 C </line>
<line>ATOM 915 CA GLN A 117 26.018 10.686 22.110 1.00 9.77 C </line>
<line>ATOM 924 CA ASN A 118 29.290 11.184 20.212 1.00 10.00 C </line>
<line>ATOM 932 CA ARG A 119 27.356 12.748 17.347 1.00 7.49 C </line>
<line>ATOM 943 CA ASP A 120 27.409 16.132 15.644 1.00 10.56 C </line>
<line>ATOM 951 CA VAL A 121 24.272 17.723 17.174 1.00 8.41 C </line>
<line>ATOM 958 CA ARG A 122 24.884 21.320 16.041 1.00 15.99 C </line>
<line>ATOM 969 CA GLN A 123 22.135 21.095 13.418 1.00 13.91 C </line>
<line>ATOM 978 CA TYR A 124 19.386 20.980 16.054 1.00 10.86 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.11 17.00 16.56 12.74 12.86 9.58 9.31 6.68 6.25 3.83 </line>
<line>ARG CA 12.49 13.31 13.24 9.49 10.03 7.43 8.62 6.28 3.84 </line>
<line>CYS CA 10.62 11.49 10.52 6.73 7.69 5.35 6.40 3.82 </line>
<line>GLN CA 13.66 14.11 12.30 8.77 8.57 5.36 3.82 </line>
<line>ASN CA 14.54 13.99 11.81 8.78 6.99 3.79 </line>
<line>ARG CA 11.53 10.60 9.02 5.86 3.79 </line>
<line>ASP CA 9.38 7.58 5.78 3.84 </line>
<line>VAL CA 5.98 5.48 3.82 </line>
<line>ARG CA 5.51 3.81 </line>
<line>GLN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 216</line>
<line>ARG CA 260</line>
<line>CYS CA 307</line>
<line>GLN CA 272</line>
<line>ASN CA 192</line>
<line>ARG CA 218</line>
<line>ASP CA 198</line>
<line>VAL CA 288</line>
<line>ARG CA 236</line>
<line>GLN CA 232</line>
<line>TYR CA 338</line>
</n14>
</entryChain>
<parallel>
<x>20.19700050354004</x>
<y>22.599000930786133</y>
<z>109.11799621582031</z>
</parallel>
<rotation>
<x>-0.3919999897480011</x>
<y>0.4180000126361847</y>
<z>0.8199999928474426</z>
<x>-0.7490000128746033</x>
<y>0.3720000088214874</y>
<z>-0.5479999780654907</z>
<x>-0.5339999794960022</x>
<y>-0.8289999961853027</y>
<z>0.16699999570846558</z>
</rotation>
<rmsd>1.2497919797897339</rmsd>
<dmax>2.5513999462127686</dmax>
</indel>