NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GCVA-1YGDD
confEVID 1GCVA-1YGDD
pdbIDA 1GCV
pdbIDB 1YGD
pdbChainA A
pdbChainB D
identity 0.299299985170364
indelSize 3
alignment <alignment>
<seq1>-AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFE-YKDYS-----AAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTE-FSPDTHCAVDKLLSAICQELSSRYR</seq1>
<seq2>MHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPETQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHHHH HHHHHHHHHHHHH GGGG - ----- HHHHHHHHHHHHHHHHHHH GGGHHHH HHHHHHHH HHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHGGG -- HHHHHHHHHHHHHHH GGGGGGGG HHHHHH HHHHHHHHHHHHHHHHHH GGGHHHH HHHHHHHH HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GCV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GCVA</entryIDChain>
<sequence>YKDYS-----AAGAK</sequence>
<secondary-structure> ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 336 CA TYR A 45 -43.322 -34.520 73.588 1.00 33.70 C </line>
<line>ATOM 348 CA LYS A 46 -44.445 -31.268 75.209 1.00 39.30 C </line>
<line>ATOM 357 CA ASP A 47 -40.911 -30.339 76.239 1.00 32.93 C </line>
<line>ATOM 365 CA TYR A 48 -38.200 -30.703 73.585 1.00 25.04 C </line>
<line>ATOM 377 CA SER A 49 -35.515 -29.181 75.804 1.00 24.76 C </line>
<line>ATOM 383 CA ALA A 50 -32.735 -31.052 77.615 1.00 26.25 C </line>
<line>ATOM 388 CA ALA A 51 -34.866 -30.924 80.780 1.00 29.98 C </line>
<line>ATOM 393 CA GLY A 52 -37.842 -32.806 79.332 1.00 27.38 C </line>
<line>ATOM 397 CA ALA A 53 -38.472 -36.094 81.110 1.00 25.04 C </line>
<line>ATOM 402 CA LYS A 54 -39.248 -37.931 77.861 1.00 25.83 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ALA GLY ALA ALA SER TYR ASP LYS TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 6.82 9.09 8.12 11.67 11.85 9.71 6.39 5.51 3.80 </line>
<line>LYS CA 8.86 9.68 7.93 11.09 11.96 9.19 6.48 3.80 </line>
<line>ASP CA 7.94 7.92 5.01 7.58 8.32 5.54 3.81 </line>
<line>TYR CA 8.46 9.26 6.13 7.93 6.80 3.80 </line>
<line>SER CA 9.73 9.20 5.57 5.31 3.81 </line>
<line>ALA CA 9.48 8.40 5.67 3.82 </line>
<line>ALA CA 8.76 6.31 3.81 </line>
<line>GLY CA 5.51 3.79 </line>
<line>ALA CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>TYR CA 208</line>
<line>LYS CA 164</line>
<line>ASP CA 208</line>
<line>TYR CA 272</line>
<line>SER CA 261</line>
<line>ALA CA 286</line>
<line>ALA CA 211</line>
<line>GLY CA 217</line>
<line>ALA CA 203</line>
<line>LYS CA 239</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YGDD</entryIDChain>
<sequence>FGDLSTPDAVMGNPK</sequence>
<secondary-structure>G HHHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3607 CA PHE D 45 10.045 37.591 -40.990 1.00 40.50 C </line>
<line>ATOM 3618 CA GLY D 46 6.323 37.078 -41.533 1.00 42.29 C </line>
<line>ATOM 3622 CA ASP D 47 4.083 34.038 -41.256 1.00 43.70 C </line>
<line>ATOM 3630 CA LEU D 48 5.459 32.050 -38.313 1.00 43.92 C </line>
<line>ATOM 3638 CA SER D 49 2.075 30.506 -37.488 1.00 44.72 C </line>
<line>ATOM 3644 CA THR D 50 2.758 26.907 -38.377 1.00 44.78 C </line>
<line>ATOM 3651 CA PRO D 51 5.670 24.494 -38.656 1.00 44.43 C </line>
<line>ATOM 3658 CA ASP D 52 5.155 24.333 -42.434 1.00 44.55 C </line>
<line>ATOM 3666 CA ALA D 53 5.293 28.107 -42.823 1.00 43.43 C </line>
<line>ATOM 3671 CA VAL D 54 8.465 28.464 -40.756 1.00 42.00 C </line>
<line>ATOM 3678 CA MET D 55 10.458 25.763 -42.557 1.00 40.99 C </line>
<line>ATOM 3686 CA GLY D 56 9.233 27.126 -45.895 1.00 39.67 C </line>
<line>ATOM 3690 CA ASN D 57 9.803 30.760 -44.938 1.00 38.74 C </line>
<line>ATOM 3698 CA PRO D 58 12.517 32.194 -47.193 1.00 37.33 C </line>
<line>ATOM 3705 CA LYS D 59 13.656 34.891 -44.766 1.00 35.80 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA ASP PRO THR SER LEU ASP GLY PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.88 8.59 7.89 11.59 11.94 9.27 10.77 14.20 14.00 13.19 11.22 7.67 6.95 3.80 </line>
<line>GLY CA 8.31 9.71 7.98 11.25 12.09 8.91 9.12 12.83 12.93 11.23 8.81 6.03 3.79 </line>
<line>ASP CA 10.23 10.48 7.55 9.79 10.53 7.11 6.25 9.83 10.02 7.80 5.54 3.81 </line>
<line>LEU CA 10.81 11.34 8.03 9.80 9.08 5.28 5.99 8.75 7.57 5.81 3.81 </line>
<line>SER CA 14.36 14.36 10.74 11.55 10.88 7.46 6.68 8.49 7.10 3.77 </line>
<line>THR CA 14.94 14.17 10.37 9.92 8.84 6.38 5.26 5.37 3.79 </line>
<line>PRO CA 14.46 13.38 9.79 8.49 6.31 5.29 5.53 3.82 </line>
<line>ASP CA 13.75 11.77 8.32 6.03 5.49 5.55 3.80 </line>
<line>ALA CA 10.94 9.38 5.64 5.09 5.68 3.80 </line>
<line>VAL CA 9.18 8.47 4.95 5.37 3.81 </line>
<line>MET CA 9.92 8.19 5.57 3.81 </line>
<line>GLY CA 9.01 6.18 3.80 </line>
<line>ASN CA 5.65 3.81 </line>
<line>PRO CA 3.80 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PHE CA 229</line>
<line>GLY CA 198</line>
<line>ASP CA 191</line>
<line>LEU CA 252</line>
<line>SER CA 191</line>
<line>THR CA 169</line>
<line>PRO CA 209</line>
<line>ASP CA 175</line>
<line>ALA CA 207</line>
<line>VAL CA 291</line>
<line>MET CA 290</line>
<line>GLY CA 229</line>
<line>ASN CA 253</line>
<line>PRO CA 230</line>
<line>LYS CA 246</line>
</n14>
</entryChain>
<parallel>
<x>-45.66400146484375</x>
<y>-63.2130012512207</y>
<z>118.13999938964844</z>
</parallel>
<rotation>
<x>0.2150000035762787</x>
<y>-0.9739999771118164</y>
<z>0.07199999690055847</z>
<x>-0.9419999718666077</x>
<y>-0.22699999809265137</y>
<z>-0.2460000067949295</z>
<x>0.25600001215934753</x>
<y>-0.014000000432133675</y>
<z>-0.9670000076293945</z>
</rotation>
<rmsd>2.2899088859558105</rmsd>
<dmax>4.826076984405518</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GCV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GCVA</entryIDChain>
<sequence>THLTE-FSPDT</sequence>
<secondary-structure>HH - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 838 CA THR A 111 -18.896 -28.813 75.229 1.00 23.18 C </line>
<line>ATOM 845 CA HIS A 112 -18.138 -31.460 77.859 1.00 30.93 C </line>
<line>ATOM 855 CA LEU A 113 -14.857 -33.237 77.113 1.00 34.16 C </line>
<line>ATOM 863 CA THR A 114 -11.730 -31.515 78.452 1.00 40.73 C </line>
<line>ATOM 870 CA GLU A 115 -9.845 -32.472 75.307 1.00 38.47 C </line>
<line>ATOM 879 CA PHE A 116 -11.508 -32.755 71.896 1.00 26.81 C </line>
<line>ATOM 890 CA SER A 117 -8.710 -32.551 69.354 1.00 23.00 C </line>
<line>ATOM 896 CA PRO A 118 -9.178 -33.209 65.614 1.00 20.78 C </line>
<line>ATOM 903 CA ASP A 119 -7.873 -36.764 66.141 1.00 26.04 C </line>
<line>ATOM 911 CA THR A 120 -10.435 -37.654 68.826 1.00 21.48 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP PRO SER PHE GLU THR LEU HIS THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 13.81 16.35 14.36 12.34 9.01 9.76 8.31 6.28 3.81 </line>
<line>HIS CA 13.39 16.46 15.27 12.74 9.01 8.74 6.44 3.81 </line>
<line>LEU CA 10.38 13.48 12.82 9.92 6.22 5.38 3.81 </line>
<line>THR CA 11.49 13.93 13.20 9.64 6.68 3.79 </line>
<line>GLU CA 8.32 10.31 9.74 6.06 3.81 </line>
<line>PHE CA 5.88 7.90 6.72 3.79 </line>
<line>SER CA 5.41 5.36 3.83 </line>
<line>PRO CA 5.63 3.82 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>THR CA 221</line>
<line>HIS CA 247</line>
<line>LEU CA 254</line>
<line>THR CA 164</line>
<line>GLU CA 187</line>
<line>PHE CA 226</line>
<line>SER CA 185</line>
<line>PRO CA 174</line>
<line>ASP CA 213</line>
<line>THR CA 284</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YGDD</entryIDChain>
<sequence>HHFGKEFTPPV</sequence>
<secondary-structure>HHHGGG HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4137 CA HIS D 116 19.710 14.161 -38.124 1.00 19.91 C </line>
<line>ATOM 4147 CA HIS D 117 21.620 14.491 -41.385 1.00 22.52 C </line>
<line>ATOM 4157 CA PHE D 118 24.597 12.205 -40.545 1.00 22.11 C </line>
<line>ATOM 4168 CA GLY D 119 23.005 9.352 -38.587 1.00 23.23 C </line>
<line>ATOM 4172 CA LYS D 120 25.590 6.669 -37.829 1.00 23.22 C </line>
<line>ATOM 4181 CA GLU D 121 28.447 8.997 -38.690 1.00 20.82 C </line>
<line>ATOM 4190 CA PHE D 122 27.409 11.308 -35.826 1.00 17.37 C </line>
<line>ATOM 4201 CA THR D 123 28.893 9.068 -33.129 1.00 16.22 C </line>
<line>ATOM 4208 CA PRO D 124 28.990 9.829 -29.394 1.00 14.40 C </line>
<line>ATOM 4215 CA PRO D 125 32.642 10.910 -29.437 1.00 12.72 C </line>
<line>ATOM 4222 CA VAL D 126 31.951 13.290 -32.364 1.00 10.92 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PRO PRO THR PHE GLU LYS GLY PHE HIS HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 13.56 15.91 13.46 11.63 8.53 10.16 9.53 5.85 5.79 3.79 </line>
<line>HIS CA 13.77 16.65 14.83 12.27 8.63 9.17 9.47 6.01 3.85 </line>
<line>PHE CA 11.05 13.78 12.22 9.13 5.57 5.34 6.25 3.81 </line>
<line>GLY CA 11.59 13.38 10.98 8.03 5.55 5.45 3.80 </line>
<line>LYS CA 10.68 11.75 9.63 6.23 5.37 3.78 </line>
<line>GLU CA 8.41 10.34 9.35 5.58 3.82 </line>
<line>PHE CA 6.05 8.27 6.79 3.81 </line>
<line>THR CA 5.27 5.57 3.81 </line>
<line>PRO CA 5.44 3.81 </line>
<line>PRO CA 3.84 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>HIS CA 257</line>
<line>HIS CA 259</line>
<line>PHE CA 250</line>
<line>GLY CA 185</line>
<line>LYS CA 150</line>
<line>GLU CA 210</line>
<line>PHE CA 256</line>
<line>THR CA 204</line>
<line>PRO CA 190</line>
<line>PRO CA 217</line>
<line>VAL CA 300</line>
</n14>
</entryChain>
<parallel>
<x>-37.83399963378906</x>
<y>-42.887001037597656</y>
<z>110.70500183105469</z>
</parallel>
<rotation>
<x>0.3400000035762787</x>
<y>-0.8769999742507935</y>
<z>-0.3409999907016754</z>
<x>-0.9200000166893005</x>
<y>-0.23399999737739563</y>
<z>-0.3160000145435333</z>
<x>0.19699999690055847</x>
<y>0.42100000381469727</y>
<z>-0.8859999775886536</z>
</rotation>
<rmsd>1.22885000705719</rmsd>
<dmax>2.2199690341949463</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1YGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YGDD</entryIDChain>
<sequence>LWGKV--NVDEV</sequence>
<secondary-structure>HGGG -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3359 CA LEU D 14 32.535 16.359 -40.555 1.00 27.92 C </line>
<line>ATOM 3367 CA TRP D 15 31.867 20.045 -41.223 1.00 26.21 C </line>
<line>ATOM 3381 CA GLY D 16 33.410 19.742 -44.672 1.00 24.67 C </line>
<line>ATOM 3385 CA LYS D 17 30.534 17.506 -45.739 1.00 22.99 C </line>
<line>ATOM 3394 CA VAL D 18 27.872 19.946 -44.603 1.00 21.25 C </line>
<line>ATOM 3401 CA ASN D 19 25.285 21.522 -46.836 1.00 20.42 C </line>
<line>ATOM 3409 CA VAL D 20 25.284 25.020 -45.411 1.00 21.32 C </line>
<line>ATOM 3416 CA ASP D 21 22.082 25.886 -47.290 1.00 21.98 C </line>
<line>ATOM 3424 CA GLU D 22 20.040 22.958 -45.872 1.00 21.31 C </line>
<line>ATOM 3433 CA VAL D 23 21.576 22.783 -42.377 1.00 19.99 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU ASP VAL ASN VAL LYS GLY TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.83 15.10 15.66 12.30 10.89 7.14 5.67 5.40 3.81 </line>
<line>TRP CA 10.71 13.04 12.91 9.25 8.78 5.23 5.35 3.79 </line>
<line>GLY CA 12.43 13.80 13.15 9.72 8.59 5.54 3.80 </line>
<line>LYS CA 10.93 11.83 12.00 9.17 6.70 3.79 </line>
<line>VAL CA 7.26 8.49 8.72 5.75 3.76 </line>
<line>ASN CA 5.94 5.52 5.43 3.78 </line>
<line>VAL CA 5.29 5.65 3.81 </line>
<line>ASP CA 5.83 3.84 </line>
<line>GLU CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 307</line>
<line>TRP CA 337</line>
<line>GLY CA 230</line>
<line>LYS CA 217</line>
<line>VAL CA 290</line>
<line>ASN CA 252</line>
<line>VAL CA 282</line>
<line>ASP CA 257</line>
<line>GLU CA 288</line>
<line>VAL CA 359</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GCV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1GCVA</entryIDChain>
<sequence>IAQVLAKSPEAY</sequence>
<secondary-structure>HHHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 91 CA ILE A 13 -15.046 -41.852 75.201 1.00 31.59 C </line>
<line>ATOM 99 CA ALA A 14 -17.552 -44.673 75.810 1.00 27.37 C </line>
<line>ATOM 104 CA GLN A 15 -16.373 -44.611 79.454 1.00 30.48 C </line>
<line>ATOM 113 CA VAL A 16 -17.253 -40.917 79.830 1.00 27.22 C </line>
<line>ATOM 120 CA LEU A 17 -20.701 -41.247 78.251 1.00 23.10 C </line>
<line>ATOM 128 CA ALA A 18 -21.549 -44.304 80.381 1.00 23.69 C </line>
<line>ATOM 133 CA LYS A 19 -21.322 -42.157 83.545 1.00 29.74 C </line>
<line>ATOM 142 CA SER A 20 -24.521 -40.221 82.798 1.00 23.90 C </line>
<line>ATOM 148 CA PRO A 21 -26.253 -41.539 79.624 1.00 20.50 C </line>
<line>ATOM 155 CA GLU A 22 -29.510 -39.610 80.164 1.00 18.12 C </line>
<line>ATOM 164 CA ALA A 23 -27.893 -36.173 80.613 1.00 17.92 C </line>
<line>ATOM 169 CA TYR A 24 -25.619 -36.449 77.564 1.00 15.45 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA GLU PRO SER LYS ALA LEU VAL GLN ALA ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 12.11 15.05 15.46 12.05 12.25 10.45 8.67 6.45 5.21 5.24 3.82 </line>
<line>ALA CA 11.65 14.22 13.70 10.00 10.83 8.97 6.08 5.25 5.51 3.83 </line>
<line>GLN CA 12.48 14.33 14.07 10.35 9.84 6.87 5.27 5.61 3.82 </line>
<line>VAL CA 9.75 11.68 12.33 9.02 7.88 5.65 5.50 3.81 </line>
<line>LEU CA 6.91 9.11 9.16 5.73 6.03 5.41 3.82 </line>
<line>ALA CA 9.28 10.32 9.24 5.51 5.60 3.83 </line>
<line>LYS CA 9.32 9.36 9.22 6.33 3.81 </line>
<line>SER CA 6.54 5.70 5.67 3.85 </line>
<line>PRO CA 5.53 5.70 3.82 </line>
<line>GLU CA 5.65 3.82 </line>
<line>ALA CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 381</line>
<line>ALA CA 370</line>
<line>GLN CA 251</line>
<line>VAL CA 298</line>
<line>LEU CA 348</line>
<line>ALA CA 264</line>
<line>LYS CA 211</line>
<line>SER CA 248</line>
<line>PRO CA 304</line>
<line>GLU CA 285</line>
<line>ALA CA 303</line>
<line>TYR CA 373</line>
</n14>
</entryChain>
<parallel>
<x>49.5099983215332</x>
<y>62.58700180053711</y>
<z>-123.43299865722656</z>
</parallel>
<rotation>
<x>0.652999997138977</x>
<y>-0.7549999952316284</y>
<z>0.06400000303983688</z>
<x>-0.7519999742507935</x>
<y>-0.656000018119812</y>
<z>-0.057999998331069946</z>
<x>0.0860000029206276</x>
<y>-0.010999999940395355</y>
<z>-0.9959999918937683</z>
</rotation>
<rmsd>1.0034250020980835</rmsd>
<dmax>2.109127998352051</dmax>
</indel>