NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GCVC-1CBMC
confEVID 1GCVC-1CBMC
pdbIDA 1GCV
pdbIDB 1CBM
pdbChainA C
pdbChainB C
identity 0.306100010871887
indelSize 3
alignment <alignment>
<seq1>-AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFE-YKDYS-----AAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLT-EFSPDTHCAVDKLLSAICQELSSRYR</seq1>
<seq2>VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHH HHHHHHHHHHHHHHH GGGG - ----- HHHHHHHHHHHHHHHHHHH GGGHHHH HHHHHIIIII HHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG -- HHHHHHHHHHHHHHH GGGG HHHHHHHHHHHHHHHHHGGGGGGHHHH HHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GCV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1GCVC</entryIDChain>
<sequence>YKDYS-----AAGAK</sequence>
<secondary-structure> ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2539 CA TYR C 45 -14.038 -28.636 30.392 1.00 33.51 C </line>
<line>ATOM 2551 CA LYS C 46 -15.169 -26.148 27.769 1.00 37.14 C </line>
<line>ATOM 2560 CA ASP C 47 -18.447 -28.009 27.191 1.00 32.08 C </line>
<line>ATOM 2568 CA TYR C 48 -20.391 -29.501 30.117 1.00 23.88 C </line>
<line>ATOM 2580 CA SER C 49 -23.253 -30.912 28.037 1.00 23.96 C </line>
<line>ATOM 2586 CA ALA C 50 -23.633 -34.523 26.873 1.00 22.15 C </line>
<line>ATOM 2591 CA ALA C 51 -22.278 -33.424 23.490 1.00 25.95 C </line>
<line>ATOM 2596 CA GLY C 52 -18.847 -32.681 24.942 1.00 25.56 C </line>
<line>ATOM 2600 CA ALA C 53 -15.965 -34.994 24.044 1.00 27.23 C </line>
<line>ATOM 2605 CA LYS C 54 -14.297 -34.787 27.459 1.00 29.83 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ALA GLY ALA ALA SER TYR ASP LYS TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 6.82 9.19 8.32 11.77 11.79 9.78 6.42 5.48 3.79 </line>
<line>LYS CA 8.69 9.63 8.01 11.04 11.94 9.39 6.64 3.81 </line>
<line>ASP CA 7.95 8.05 5.20 7.60 8.33 5.68 3.82 </line>
<line>TYR CA 8.49 9.31 6.27 7.93 6.80 3.81 </line>
<line>SER CA 9.78 9.26 5.67 5.29 3.81 </line>
<line>ALA CA 9.36 8.19 5.48 3.81 </line>
<line>ALA CA 9.02 6.53 3.80 </line>
<line>GLY CA 5.61 3.80 </line>
<line>ALA CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>TYR CA 209</line>
<line>LYS CA 165</line>
<line>ASP CA 208</line>
<line>TYR CA 274</line>
<line>SER CA 264</line>
<line>ALA CA 295</line>
<line>ALA CA 209</line>
<line>GLY CA 220</line>
<line>ALA CA 206</line>
<line>LYS CA 238</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CBM</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1CBMC</entryIDChain>
<sequence>FGDLSTPDAVMGNPK</sequence>
<secondary-structure> HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2669 CA PHE C 45 -1.186 -12.842 25.070 1.00 23.84 C </line>
<line>ATOM 2680 CA GLY C 46 2.196 -13.153 26.763 1.00 19.31 C </line>
<line>ATOM 2684 CA ASP C 47 5.386 -14.294 25.047 1.00 28.41 C </line>
<line>ATOM 2692 CA LEU C 48 5.358 -13.734 21.284 1.00 27.94 C </line>
<line>ATOM 2700 CA SER C 49 9.166 -13.713 21.117 1.00 44.83 C </line>
<line>ATOM 2706 CA THR C 50 9.776 -16.748 18.911 1.00 26.86 C </line>
<line>ATOM 2713 CA PRO C 51 7.807 -18.448 16.171 1.00 23.52 C </line>
<line>ATOM 2720 CA ASP C 52 7.089 -21.384 18.463 1.00 22.28 C </line>
<line>ATOM 2728 CA ALA C 53 6.232 -18.911 21.265 1.00 21.33 C </line>
<line>ATOM 2733 CA VAL C 54 3.650 -17.522 18.848 1.00 17.30 C </line>
<line>ATOM 2740 CA MET C 55 2.328 -20.575 17.023 1.00 18.82 C </line>
<line>ATOM 2748 CA GLY C 56 1.599 -22.770 20.052 1.00 21.58 C </line>
<line>ATOM 2752 CA ASN C 57 0.402 -19.846 22.214 1.00 18.62 C </line>
<line>ATOM 2760 CA PRO C 58 -2.962 -21.056 23.602 1.00 19.72 C </line>
<line>ATOM 2767 CA LYS C 59 -4.409 -17.569 23.428 1.00 16.17 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA ASP PRO THR SER LEU ASP GLY PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.95 8.53 7.73 11.47 11.70 9.17 10.31 13.60 13.84 13.17 11.12 7.61 6.73 3.79 </line>
<line>GLY CA 8.62 9.95 8.29 11.74 12.25 9.16 8.93 12.67 13.10 11.49 8.99 6.35 3.80 </line>
<line>ASP CA 10.45 10.84 7.98 10.54 10.64 7.20 6.03 9.82 10.09 7.93 5.48 3.80 </line>
<line>LEU CA 10.71 11.32 7.92 9.86 8.61 4.82 5.25 8.34 7.37 5.85 3.81 </line>
<line>SER CA 14.30 14.39 10.75 11.85 10.52 7.08 5.97 8.38 6.98 3.80 </line>
<line>THR CA 14.91 14.24 10.41 10.22 8.58 6.18 4.77 5.38 3.78 </line>
<line>PRO CA 14.24 13.34 9.66 8.50 5.94 5.03 5.35 3.79 </line>
<line>ASP CA 13.09 11.29 7.82 5.88 5.04 5.19 3.83 </line>
<line>ALA CA 10.94 9.73 5.98 6.15 6.00 3.80 </line>
<line>VAL CA 9.27 8.88 5.22 5.76 3.79 </line>
<line>MET CA 9.77 8.46 5.58 3.81 </line>
<line>GLY CA 8.63 6.03 3.83 </line>
<line>ASN CA 5.46 3.83 </line>
<line>PRO CA 3.78 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PHE CA 233</line>
<line>GLY CA 195</line>
<line>ASP CA 200</line>
<line>LEU CA 259</line>
<line>SER CA 189</line>
<line>THR CA 171</line>
<line>PRO CA 220</line>
<line>ASP CA 184</line>
<line>ALA CA 204</line>
<line>VAL CA 289</line>
<line>MET CA 289</line>
<line>GLY CA 236</line>
<line>ASN CA 257</line>
<line>PRO CA 226</line>
<line>LYS CA 245</line>
</n14>
</entryChain>
<parallel>
<x>-22.663000106811523</x>
<y>-14.11299991607666</y>
<z>5.03000020980835</z>
</parallel>
<rotation>
<x>-0.8080000281333923</x>
<y>0.5889999866485596</y>
<z>0.032999999821186066</z>
<x>0.2840000092983246</x>
<y>0.3400000035762787</y>
<z>0.8970000147819519</z>
<x>0.5170000195503235</x>
<y>0.7329999804496765</y>
<z>-0.44200000166893005</z>
</rotation>
<rmsd>2.303966999053955</rmsd>
<dmax>4.768277168273926</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GCV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1GCVC</entryIDChain>
<sequence>ATHLT-EFSPD</sequence>
<secondary-structure>HHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 3036 CA ALA C 110 -35.799 -43.725 33.226 1.00 18.01 C </line>
<line>ATOM 3041 CA THR C 111 -35.624 -41.717 29.988 1.00 24.63 C </line>
<line>ATOM 3048 CA HIS C 112 -34.074 -44.614 28.071 1.00 29.28 C </line>
<line>ATOM 3058 CA LEU C 113 -35.470 -47.893 29.421 1.00 34.19 C </line>
<line>ATOM 3066 CA THR C 114 -38.734 -49.365 28.085 1.00 45.16 C </line>
<line>ATOM 3073 CA GLU C 115 -39.604 -50.688 31.543 1.00 44.29 C </line>
<line>ATOM 3082 CA PHE C 116 -38.414 -48.867 34.675 1.00 32.93 C </line>
<line>ATOM 3093 CA SER C 117 -40.821 -50.125 37.333 1.00 25.38 C </line>
<line>ATOM 3099 CA PRO C 118 -40.487 -49.137 40.992 1.00 23.36 C </line>
<line>ATOM 3106 CA ASP C 119 -39.180 -52.689 41.504 1.00 24.27 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO SER PHE GLU THR LEU HIS THR ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.66 10.56 9.11 5.95 8.11 8.18 5.65 5.51 3.81 </line>
<line>THR CA 16.30 14.13 12.31 8.99 9.94 8.47 6.20 3.80 </line>
<line>HIS CA 16.48 15.12 12.72 8.97 8.92 6.65 3.81 </line>
<line>LEU CA 13.52 12.67 9.81 6.10 5.42 3.82 </line>
<line>THR CA 13.83 13.03 9.51 6.62 3.80 </line>
<line>GLU CA 10.17 9.62 5.94 3.81 </line>
<line>PHE CA 7.86 6.65 3.80 </line>
<line>SER CA 5.16 3.80 </line>
<line>PRO CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ALA CA 258</line>
<line>THR CA 222</line>
<line>HIS CA 244</line>
<line>LEU CA 251</line>
<line>THR CA 161</line>
<line>GLU CA 187</line>
<line>PHE CA 236</line>
<line>SER CA 191</line>
<line>PRO CA 178</line>
<line>ASP CA 217</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CBM</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1CBMC</entryIDChain>
<sequence>AHHFGKEFTPP</sequence>
<secondary-structure>HHHHGGG HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3209 CA ALA C 115 -3.006 -22.330 -0.401 1.00 14.40 C </line>
<line>ATOM 3214 CA HIS C 116 -0.760 -24.216 2.028 1.00 20.25 C </line>
<line>ATOM 3224 CA HIS C 117 -3.611 -26.450 3.156 1.00 19.70 C </line>
<line>ATOM 3239 CA PHE C 118 -5.447 -27.123 -0.121 1.00 22.70 C </line>
<line>ATOM 3250 CA GLY C 119 -2.463 -27.236 -2.441 1.00 30.03 C </line>
<line>ATOM 3254 CA LYS C 120 -3.753 -28.079 -5.922 1.00 38.23 C </line>
<line>ATOM 3263 CA GLU C 121 -7.445 -27.639 -5.095 1.00 26.04 C </line>
<line>ATOM 3272 CA PHE C 122 -6.524 -23.952 -4.499 1.00 18.99 C </line>
<line>ATOM 3283 CA THR C 123 -6.725 -23.043 -8.228 1.00 19.83 C </line>
<line>ATOM 3290 CA PRO C 124 -6.130 -19.631 -9.771 1.00 17.70 C </line>
<line>ATOM 3297 CA PRO C 125 -9.840 -18.648 -10.001 1.00 18.84 C </line>
</atom-coordinate>
<distance-map>
<line> PRO PRO THR PHE GLU LYS GLY PHE HIS HIS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.35 10.24 8.69 5.64 8.36 8.01 5.34 5.39 5.48 3.81 </line>
<line>HIS CA 16.07 13.75 11.92 8.71 10.35 9.33 5.66 5.92 3.79 </line>
<line>HIS CA 16.52 14.83 12.28 8.56 9.18 9.22 5.77 3.82 </line>
<line>PHE CA 13.74 12.24 9.17 5.51 5.39 6.12 3.78 </line>
<line>GLY CA 13.61 11.18 8.32 5.61 5.66 3.81 </line>
<line>LYS CA 11.94 9.58 6.29 5.17 3.81 </line>
<line>GLU CA 10.52 9.37 5.61 3.85 </line>
<line>PHE CA 8.33 6.83 3.84 </line>
<line>THR CA 5.67 3.79 </line>
<line>PRO CA 3.84 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ALA CA 294</line>
<line>HIS CA 242</line>
<line>HIS CA 258</line>
<line>PHE CA 259</line>
<line>GLY CA 188</line>
<line>LYS CA 156</line>
<line>GLU CA 214</line>
<line>PHE CA 264</line>
<line>THR CA 216</line>
<line>PRO CA 196</line>
<line>PRO CA 235</line>
</n14>
</entryChain>
<parallel>
<x>-32.81999969482422</x>
<y>-21.875999450683594</y>
<z>33.49300003051758</z>
</parallel>
<rotation>
<x>-0.531000018119812</x>
<y>0.7570000290870667</y>
<z>-0.38100001215934753</z>
<x>0.15000000596046448</x>
<y>0.5270000100135803</y>
<z>0.8360000252723694</z>
<x>0.8339999914169312</x>
<y>0.3869999945163727</y>
<z>-0.39399999380111694</z>
</rotation>
<rmsd>1.249642014503479</rmsd>
<dmax>2.8415520191192627</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1CBM</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1CBMC</entryIDChain>
<sequence>LWGKV--NVDEV</sequence>
<secondary-structure>HGGG -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2406 CA LEU C 14 -13.664 -25.011 -0.101 1.00 19.98 C </line>
<line>ATOM 2414 CA TRP C 15 -14.659 -23.180 3.036 1.00 15.05 C </line>
<line>ATOM 2428 CA GLY C 16 -16.717 -26.192 4.180 1.00 19.49 C </line>
<line>ATOM 2432 CA LYS C 17 -13.544 -28.344 4.224 1.00 16.34 C </line>
<line>ATOM 2441 CA VAL C 18 -11.618 -25.938 6.493 1.00 13.19 C </line>
<line>ATOM 2448 CA ASN C 19 -10.797 -27.122 10.022 1.00 21.12 C </line>
<line>ATOM 2456 CA VAL C 20 -11.854 -24.013 12.011 1.00 41.96 C </line>
<line>ATOM 2463 CA ASP C 21 -10.250 -25.135 15.203 1.00 34.61 C </line>
<line>ATOM 2471 CA GLU C 22 -6.921 -25.054 13.348 1.00 24.61 C </line>
<line>ATOM 2480 CA VAL C 23 -6.674 -22.609 10.340 1.00 20.63 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU ASP VAL ASN VAL LYS GLY TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.79 15.04 15.68 12.29 10.73 6.97 5.46 5.39 3.77 </line>
<line>TRP CA 10.84 13.03 13.09 9.44 8.90 5.37 5.41 3.82 </line>
<line>GLY CA 12.31 13.47 12.82 9.47 8.37 5.60 3.83 </line>
<line>LYS CA 10.84 11.74 11.90 9.07 6.53 3.83 </line>
<line>VAL CA 7.09 8.36 8.85 5.85 3.81 </line>
<line>ASN CA 6.12 5.51 5.58 3.84 </line>
<line>VAL CA 5.62 5.22 3.74 </line>
<line>ASP CA 6.54 3.81 </line>
<line>GLU CA 3.88 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 314</line>
<line>TRP CA 346</line>
<line>GLY CA 243</line>
<line>LYS CA 221</line>
<line>VAL CA 301</line>
<line>ASN CA 244</line>
<line>VAL CA 270</line>
<line>ASP CA 236</line>
<line>GLU CA 284</line>
<line>VAL CA 363</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GCV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1GCVC</entryIDChain>
<sequence>IAQVLAKSPEAY</sequence>
<secondary-structure>HHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2294 CA ILE C 13 -29.504 -52.925 33.276 1.00 36.35 C </line>
<line>ATOM 2302 CA ALA C 14 -25.750 -53.564 33.028 1.00 36.21 C </line>
<line>ATOM 2307 CA GLN C 15 -26.093 -54.889 29.470 1.00 39.13 C </line>
<line>ATOM 2316 CA VAL C 16 -28.044 -51.801 28.308 1.00 31.31 C </line>
<line>ATOM 2323 CA LEU C 17 -25.415 -49.515 29.821 1.00 28.66 C </line>
<line>ATOM 2331 CA ALA C 18 -22.486 -51.497 28.383 1.00 31.86 C </line>
<line>ATOM 2336 CA LYS C 19 -23.752 -50.893 24.843 1.00 38.09 C </line>
<line>ATOM 2345 CA SER C 20 -23.080 -47.156 24.931 1.00 33.17 C </line>
<line>ATOM 2351 CA PRO C 21 -21.063 -46.172 28.038 1.00 26.76 C </line>
<line>ATOM 2358 CA GLU C 22 -19.935 -42.833 26.570 1.00 25.46 C </line>
<line>ATOM 2367 CA ALA C 23 -23.419 -41.708 25.563 1.00 23.90 C </line>
<line>ATOM 2372 CA TYR C 24 -25.070 -42.869 28.797 1.00 24.22 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA GLU PRO SER LYS ALA LEU VAL GLN ALA ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 11.87 14.91 15.44 12.01 12.01 10.41 8.67 6.35 5.30 5.48 3.82 </line>
<line>ALA CA 11.52 14.20 13.81 10.08 10.67 8.84 6.04 5.18 5.54 3.81 </line>
<line>GLN CA 12.08 14.01 13.84 10.17 9.46 6.55 5.07 5.43 3.83 </line>
<line>VAL CA 9.43 11.44 12.21 8.97 7.59 5.59 5.57 3.80 </line>
<line>LEU CA 6.73 9.11 9.23 5.77 5.91 5.43 3.82 </line>
<line>ALA CA 9.02 10.23 9.21 5.52 5.58 3.81 </line>
<line>LYS CA 9.04 9.22 9.08 6.30 3.80 </line>
<line>SER CA 6.11 5.50 5.59 3.83 </line>
<line>PRO CA 5.25 5.62 3.82 </line>
<line>GLU CA 5.60 3.80 </line>
<line>ALA CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 387</line>
<line>ALA CA 368</line>
<line>GLN CA 255</line>
<line>VAL CA 301</line>
<line>LEU CA 351</line>
<line>ALA CA 268</line>
<line>LYS CA 209</line>
<line>SER CA 253</line>
<line>PRO CA 306</line>
<line>GLU CA 290</line>
<line>ALA CA 306</line>
<line>TYR CA 374</line>
</n14>
</entryChain>
<parallel>
<x>11.972999572753906</x>
<y>24.239999771118164</y>
<z>-22.297000885009766</z>
</parallel>
<rotation>
<x>-0.4490000009536743</x>
<y>0.4819999933242798</y>
<z>0.7519999742507935</z>
<x>0.8849999904632568</x>
<y>0.12600000202655792</y>
<z>0.4480000138282776</z>
<x>0.12099999934434891</x>
<y>0.8669999837875366</y>
<z>-0.4830000102519989</z>
</rotation>
<rmsd>1.0250309705734253</rmsd>
<dmax>2.0332469940185547</dmax>
</indel>