NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GCWC-2ZLWD
confEVID 1GCWC-2ZLWD
pdbIDA 1GCW
pdbIDB 2ZLW
pdbChainA C
pdbChainB D
identity 0.278899997472763
indelSize 3
alignment <alignment>
<seq1>-AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFE-YKDYS-----AAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLT-EFSPDTHCAVDKLLSAICQELSSRYR</seq1>
<seq2>VQLSGEEKAAVLALWDKV--NEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHHHHH HHHHHHHHHHHHH GGGG - ----- HHHHHHHHHHHHHHHHHGGGGGGHHHH HHHHHIIIII HHHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH -- HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GCW</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1GCWC</entryIDChain>
<sequence>YKDYS-----AAGAK</sequence>
<secondary-structure> ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2472 CA TYR C 45 9.108 42.010 67.543 1.00 41.30 C </line>
<line>ATOM 2484 CA LYS C 46 5.700 41.806 69.174 1.00 46.04 C </line>
<line>ATOM 2493 CA ASP C 47 4.180 44.072 66.515 1.00 44.67 C </line>
<line>ATOM 2501 CA TYR C 48 5.179 43.791 62.868 1.00 39.48 C </line>
<line>ATOM 2513 CA SER C 49 2.650 46.404 61.744 1.00 35.38 C </line>
<line>ATOM 2519 CA ALA C 50 3.678 50.002 61.025 1.00 43.49 C </line>
<line>ATOM 2524 CA ALA C 51 2.238 50.795 64.451 1.00 47.71 C </line>
<line>ATOM 2529 CA GLY C 52 4.838 48.594 66.137 1.00 39.45 C </line>
<line>ATOM 2533 CA ALA C 53 7.202 50.544 68.389 1.00 46.57 C </line>
<line>ATOM 2538 CA LYS C 54 10.302 48.602 67.285 1.00 43.07 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ALA GLY ALA ALA SER TYR ASP LYS TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 6.70 8.79 7.97 11.57 11.66 9.73 6.36 5.44 3.78 </line>
<line>LYS CA 8.42 8.90 7.49 10.73 11.73 9.25 6.63 3.81 </line>
<line>ASP CA 7.65 7.38 4.59 7.30 8.10 5.53 3.79 </line>
<line>TYR CA 8.30 8.95 5.82 7.76 6.65 3.81 </line>
<line>SER CA 9.70 9.06 5.37 5.17 3.81 </line>
<line>ALA CA 9.22 8.18 5.43 3.80 </line>
<line>ALA CA 8.82 6.34 3.80 </line>
<line>GLY CA 5.58 3.80 </line>
<line>ALA CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>TYR CA 211</line>
<line>LYS CA 167</line>
<line>ASP CA 209</line>
<line>TYR CA 268</line>
<line>SER CA 250</line>
<line>ALA CA 280</line>
<line>ALA CA 201</line>
<line>GLY CA 221</line>
<line>ALA CA 202</line>
<line>LYS CA 240</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>FGDLSNPGAVMGNPK</sequence>
<secondary-structure>G HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3615 CA PHE D 45 -27.858 0.821 46.378 1.00 20.57 C </line>
<line>ATOM 3626 CA GLY D 46 -28.380 -2.497 48.171 1.00 21.29 C </line>
<line>ATOM 3630 CA ASP D 47 -29.141 -5.668 46.165 1.00 29.86 C </line>
<line>ATOM 3638 CA LEU D 48 -27.704 -5.763 42.624 1.00 16.24 C </line>
<line>ATOM 3646 CA SER D 49 -27.448 -9.565 42.377 1.00 24.16 C </line>
<line>ATOM 3652 CA ASN D 50 -29.616 -10.625 39.438 1.00 41.54 C </line>
<line>ATOM 3660 CA PRO D 51 -31.076 -8.686 36.440 1.00 34.87 C </line>
<line>ATOM 3667 CA GLY D 52 -34.703 -8.259 37.615 1.00 29.21 C </line>
<line>ATOM 3671 CA ALA D 53 -33.702 -7.001 41.054 1.00 25.43 C </line>
<line>ATOM 3676 CA VAL D 54 -31.347 -4.365 39.528 1.00 25.94 C </line>
<line>ATOM 3683 CA MET D 55 -33.964 -2.754 37.187 1.00 29.82 C </line>
<line>ATOM 3691 CA GLY D 56 -36.655 -2.681 39.881 1.00 24.63 C </line>
<line>ATOM 3695 CA ASN D 57 -34.073 -1.079 42.204 1.00 26.57 C </line>
<line>ATOM 3703 CA PRO D 58 -35.338 2.411 43.238 1.00 16.40 C </line>
<line>ATOM 3710 CA LYS D 59 -31.796 3.656 43.733 1.00 33.64 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA GLY PRO ASN SER LEU ASP GLY PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.53 8.27 7.72 11.48 11.60 9.27 11.12 14.36 14.12 13.50 11.14 7.58 6.62 3.81 </line>
<line>GLY CA 8.32 9.84 8.37 11.71 12.32 9.33 9.96 13.59 13.53 11.99 9.19 6.47 3.83 </line>
<line>ASP CA 10.00 10.59 7.81 10.24 10.60 7.11 6.98 10.52 10.36 8.37 5.69 3.82 </line>
<line>LEU CA 10.33 11.20 7.92 9.86 8.82 4.98 6.32 8.96 7.63 6.12 3.82 </line>
<line>SER CA 13.98 14.37 10.77 11.76 10.76 7.10 6.89 8.78 7.01 3.80 </line>
<line>ASN CA 15.07 14.73 10.89 10.62 9.27 6.50 5.70 5.90 3.86 </line>
<line>PRO CA 14.35 13.69 10.00 8.89 6.64 5.32 5.57 3.84 </line>
<line>GLY CA 13.71 12.08 8.54 6.33 5.57 5.49 3.80 </line>
<line>ALA CA 11.15 9.80 6.04 5.36 5.75 3.85 </line>
<line>VAL CA 9.07 8.70 5.04 5.58 3.86 </line>
<line>MET CA 9.41 8.07 5.29 3.81 </line>
<line>GLY CA 8.87 6.24 3.82 </line>
<line>ASN CA 5.47 3.85 </line>
<line>PRO CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PHE CA 225</line>
<line>GLY CA 186</line>
<line>ASP CA 194</line>
<line>LEU CA 255</line>
<line>SER CA 192</line>
<line>ASN CA 165</line>
<line>PRO CA 213</line>
<line>GLY CA 173</line>
<line>ALA CA 191</line>
<line>VAL CA 286</line>
<line>MET CA 285</line>
<line>GLY CA 230</line>
<line>ASN CA 256</line>
<line>PRO CA 220</line>
<line>LYS CA 253</line>
</n14>
</entryChain>
<parallel>
<x>35.3489990234375</x>
<y>49.58300018310547</y>
<z>21.80900001525879</z>
</parallel>
<rotation>
<x>0.49799999594688416</x>
<y>-0.7599999904632568</y>
<z>-0.4189999997615814</z>
<x>0.8519999980926514</x>
<y>0.3400000035762787</y>
<z>0.39800000190734863</z>
<x>-0.1599999964237213</x>
<y>-0.5550000071525574</y>
<z>0.8169999718666077</z>
</rotation>
<rmsd>2.3470981121063232</rmsd>
<dmax>4.809402942657471</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GCW</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1GCWC</entryIDChain>
<sequence>ATHLT-EFSPD</sequence>
<secondary-structure>HHH - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2969 CA ALA C 110 5.650 55.687 44.670 1.00 38.38 C </line>
<line>ATOM 2974 CA THR C 111 2.943 56.208 47.283 1.00 50.28 C </line>
<line>ATOM 2981 CA HIS C 112 4.046 59.522 48.861 1.00 51.14 C </line>
<line>ATOM 2991 CA LEU C 113 6.049 61.259 46.134 1.00 43.87 C </line>
<line>ATOM 2999 CA THR C 114 4.007 63.601 43.941 1.00 52.15 C </line>
<line>ATOM 3006 CA GLU C 115 6.109 62.488 41.001 1.00 47.52 C </line>
<line>ATOM 3015 CA PHE C 116 7.865 59.158 40.523 1.00 34.79 C </line>
<line>ATOM 3026 CA SER C 117 8.691 59.022 36.817 1.00 37.97 C </line>
<line>ATOM 3032 CA PRO C 118 10.838 56.277 35.223 1.00 34.70 C </line>
<line>ATOM 3039 CA ASP C 119 13.761 58.685 35.463 1.00 36.83 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO SER PHE GLU THR LEU HIS THR ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.63 10.79 9.06 5.84 7.74 8.12 5.77 5.90 3.80 </line>
<line>THR CA 16.21 14.41 12.27 8.87 9.43 8.18 6.04 3.83 </line>
<line>HIS CA 16.57 15.58 12.92 9.18 8.65 6.39 3.80 </line>
<line>LEU CA 13.42 12.92 9.94 6.26 5.28 3.80 </line>
<line>THR CA 13.83 13.28 9.68 6.80 3.78 </line>
<line>GLU CA 10.18 9.71 6.02 3.79 </line>
<line>PHE CA 7.78 6.73 3.80 </line>
<line>SER CA 5.26 3.83 </line>
<line>PRO CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ALA CA 252</line>
<line>THR CA 220</line>
<line>HIS CA 238</line>
<line>LEU CA 260</line>
<line>THR CA 165</line>
<line>GLU CA 190</line>
<line>PHE CA 229</line>
<line>SER CA 187</line>
<line>PRO CA 171</line>
<line>ASP CA 215</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>ARHFGKDFTPE</sequence>
<secondary-structure>HHHHGGG HH</secondary-structure>
<atom-coordinate>
<line>ATOM 4142 CA ALA D 115 -32.549 2.154 19.812 1.00 13.93 C </line>
<line>ATOM 4147 CA ARG D 116 -34.833 -0.147 21.767 1.00 18.29 C </line>
<line>ATOM 4158 CA HIS D 117 -37.236 2.706 22.583 1.00 18.46 C </line>
<line>ATOM 4168 CA PHE D 118 -37.472 4.394 19.173 1.00 18.14 C </line>
<line>ATOM 4179 CA GLY D 119 -36.998 1.425 16.871 1.00 13.31 C </line>
<line>ATOM 4183 CA LYS D 120 -36.803 2.374 13.213 1.00 16.02 C </line>
<line>ATOM 4192 CA ASP D 121 -36.902 6.089 13.964 1.00 30.26 C </line>
<line>ATOM 4200 CA PHE D 122 -33.504 5.691 15.521 1.00 15.79 C </line>
<line>ATOM 4211 CA THR D 123 -32.193 5.421 11.974 1.00 21.39 C </line>
<line>ATOM 4218 CA PRO D 124 -28.585 4.661 11.134 1.00 15.99 C </line>
<line>ATOM 4225 CA GLU D 125 -28.100 8.353 10.285 1.00 23.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO THR PHE ASP LYS GLY PHE HIS ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.21 9.86 8.50 5.64 8.28 7.85 5.38 5.45 5.47 3.79 </line>
<line>ARG CA 15.79 13.24 11.57 8.65 10.20 9.13 5.58 5.86 3.82 </line>
<line>HIS CA 16.33 14.48 12.06 8.53 9.27 9.39 5.86 3.81 </line>
<line>PHE CA 13.51 11.99 8.99 5.55 5.51 6.33 3.79 </line>
<line>GLY CA 13.06 10.68 7.94 5.68 5.50 3.78 </line>
<line>LYS CA 10.96 8.78 5.66 5.22 3.79 </line>
<line>ASP CA 9.80 8.90 5.16 3.76 </line>
<line>PHE CA 7.98 6.67 3.79 </line>
<line>THR CA 5.31 3.78 </line>
<line>PRO CA 3.82 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ALA CA 292</line>
<line>ARG CA 248</line>
<line>HIS CA 259</line>
<line>PHE CA 257</line>
<line>GLY CA 189</line>
<line>LYS CA 155</line>
<line>ASP CA 202</line>
<line>PHE CA 264</line>
<line>THR CA 208</line>
<line>PRO CA 187</line>
<line>GLU CA 210</line>
</n14>
</entryChain>
<parallel>
<x>40.88100051879883</x>
<y>56.152000427246094</y>
<z>25.945999145507812</z>
</parallel>
<rotation>
<x>0.23999999463558197</x>
<y>-0.8999999761581421</y>
<z>-0.36399999260902405</z>
<x>0.9679999947547913</x>
<y>0.24899999797344208</y>
<z>0.020999999716877937</z>
<x>0.07199999690055847</x>
<y>-0.3569999933242798</y>
<z>0.9309999942779541</z>
</rotation>
<rmsd>1.2835969924926758</rmsd>
<dmax>2.744776964187622</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>LWDKV--NEEEV</sequence>
<secondary-structure>H -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3356 CA LEU D 14 -35.699 13.034 19.487 1.00 17.31 C </line>
<line>ATOM 3364 CA TRP D 15 -34.693 14.376 22.932 1.00 9.39 C </line>
<line>ATOM 3378 CA ASP D 16 -38.152 15.870 23.251 1.00 14.74 C </line>
<line>ATOM 3386 CA LYS D 17 -39.432 12.308 23.248 1.00 11.42 C </line>
<line>ATOM 3395 CA VAL D 18 -36.675 11.004 25.537 1.00 8.25 C </line>
<line>ATOM 3402 CA ASN D 19 -38.278 10.039 28.858 1.00 20.92 C </line>
<line>ATOM 3410 CA GLU D 20 -35.552 10.733 31.453 1.00 19.36 C </line>
<line>ATOM 3419 CA GLU D 21 -36.596 8.388 34.268 1.00 17.54 C </line>
<line>ATOM 3428 CA GLU D 22 -37.459 5.552 31.900 1.00 16.80 C </line>
<line>ATOM 3437 CA VAL D 23 -34.329 5.859 29.756 1.00 11.40 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU GLU GLU ASN VAL LYS ASP TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.60 14.60 15.52 12.19 10.17 6.46 5.35 5.31 3.83 </line>
<line>TRP CA 10.92 12.88 12.96 9.31 8.17 4.70 5.18 3.78 </line>
<line>ASP CA 12.54 13.48 13.41 10.02 8.09 5.58 3.79 </line>
<line>LYS CA 10.49 11.15 12.04 9.21 6.16 3.81 </line>
<line>VAL CA 7.06 8.42 9.11 6.03 3.81 </line>
<line>ASN CA 5.82 5.48 5.90 3.83 </line>
<line>GLU CA 5.30 5.54 3.81 </line>
<line>GLU CA 5.65 3.79 </line>
<line>GLU CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 322</line>
<line>TRP CA 345</line>
<line>ASP CA 234</line>
<line>LYS CA 240</line>
<line>VAL CA 335</line>
<line>ASN CA 287</line>
<line>GLU CA 319</line>
<line>GLU CA 288</line>
<line>GLU CA 310</line>
<line>VAL CA 374</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1GCW</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1GCWC</entryIDChain>
<sequence>IAQVLAKSPEAY</sequence>
<secondary-structure>HHHHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2227 CA ILE C 13 14.303 62.557 47.832 1.00 46.37 C </line>
<line>ATOM 2235 CA ALA C 14 16.614 62.335 50.854 1.00 37.24 C </line>
<line>ATOM 2240 CA GLN C 15 15.152 65.722 51.801 1.00 55.25 C </line>
<line>ATOM 2249 CA VAL C 16 11.617 64.353 51.875 1.00 49.08 C </line>
<line>ATOM 2256 CA LEU C 17 12.810 61.237 53.710 1.00 44.28 C </line>
<line>ATOM 2264 CA ALA C 18 14.725 63.234 56.345 1.00 46.91 C </line>
<line>ATOM 2269 CA LYS C 19 11.516 65.056 57.388 1.00 50.03 C </line>
<line>ATOM 2278 CA SER C 20 9.949 61.953 58.939 1.00 43.81 C </line>
<line>ATOM 2284 CA PRO C 21 12.427 59.042 58.820 1.00 38.64 C </line>
<line>ATOM 2291 CA GLU C 22 10.290 57.031 61.257 1.00 42.50 C </line>
<line>ATOM 2300 CA ALA C 23 7.050 57.192 59.287 1.00 38.82 C </line>
<line>ATOM 2305 CA TYR C 24 8.667 56.238 55.979 1.00 40.74 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA GLU PRO SER LYS ALA LEU VAL GLN ALA ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 11.75 14.58 15.06 11.69 11.95 10.26 8.55 6.21 5.18 5.15 3.81 </line>
<line>ALA CA 11.25 13.75 13.28 9.58 10.49 8.72 5.88 4.88 5.48 3.81 </line>
<line>GLN CA 12.23 13.94 13.73 10.07 9.60 6.70 5.20 5.41 3.79 </line>
<line>VAL CA 9.56 11.27 11.97 8.78 7.64 5.56 5.56 3.81 </line>
<line>LEU CA 6.88 8.98 9.00 5.57 6.00 5.46 3.82 </line>
<line>ALA CA 9.26 10.20 9.07 5.38 5.58 3.83 </line>
<line>LYS CA 9.37 9.24 8.99 6.25 3.81 </line>
<line>SER CA 6.56 5.59 5.45 3.82 </line>
<line>PRO CA 5.48 5.71 3.81 </line>
<line>GLU CA 5.58 3.80 </line>
<line>ALA CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 375</line>
<line>ALA CA 362</line>
<line>GLN CA 250</line>
<line>VAL CA 286</line>
<line>LEU CA 337</line>
<line>ALA CA 255</line>
<line>LYS CA 197</line>
<line>SER CA 241</line>
<line>PRO CA 297</line>
<line>GLU CA 284</line>
<line>ALA CA 300</line>
<line>TYR CA 369</line>
</n14>
</entryChain>
<parallel>
<x>-49.779998779296875</x>
<y>-49.810001373291016</y>
<z>-28.256999969482422</z>
</parallel>
<rotation>
<x>0.5879999995231628</x>
<y>0.8090000152587891</y>
<z>0.013000000268220901</z>
<x>-0.7879999876022339</x>
<y>0.5759999752044678</y>
<z>-0.21799999475479126</z>
<x>-0.18400000035762787</x>
<y>0.11699999868869781</y>
<z>0.9760000109672546</z>
</rotation>
<rmsd>0.918857991695404</rmsd>
<dmax>2.105787992477417</dmax>
</indel>