NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GHFH-1XF4B
confEVID 1GHFH-1XF4B
pdbIDA 1GHF
pdbIDB 1XF4
pdbChainA H
pdbChainB B
identity 0.668200016021729
indelSize 2
alignment <alignment>
<seq1>-VQLQQSGPELKKPGETVKISCKLW-YTFTDYGMNWVKQAPGKGLKWMGWIQTNTEEPTYGAEFKGRFAFSLETSAFTAYKQINNLKNEDMATYFCARVEA----GFDYWAQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKII--</seq1>
<seq2>QVKLLESGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCVRGGYRPYYAMDYWGQGTSVTVSSAKTTPPSVYPLAP-------SMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR</seq2>
<ss_1>- EEE EEEEEE - GGG EEEEEEEE EEEEEEEEE EEEEE EEEEEEE EEEEEEE GGG EEEEEE ---- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEE EEEEE --</ss_1>
<ss_2> EEE EEE EEEEEEEE EEEEEEE EEEEEEE EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE ------- EEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEE EEEEEEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GHF</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1GHFH</entryIDChain>
<sequence>SCKLW-YTFTD</sequence>
<secondary-structure>EEE - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1794 CA SER H 20 87.403 34.500 -2.028 1.00 3.46 C </line>
<line>ATOM 1800 CA CYS H 21 85.659 37.584 -3.384 1.00 7.08 C </line>
<line>ATOM 1806 CA LYS H 22 84.746 37.869 -7.181 1.00 10.68 C </line>
<line>ATOM 1815 CA LEU H 23 83.403 41.023 -9.144 1.00 12.46 C </line>
<line>ATOM 1823 CA TRP H 25 81.461 42.924 -11.919 1.00 17.95 C </line>
<line>ATOM 1837 CA TYR H 26 83.145 46.238 -13.264 1.00 9.68 C </line>
<line>ATOM 1849 CA THR H 27 86.776 46.947 -14.523 1.00 5.36 C </line>
<line>ATOM 1856 CA PHE H 28 88.507 44.946 -11.847 1.00 6.00 C </line>
<line>ATOM 1867 CA THR H 29 92.015 46.333 -11.968 1.00 8.24 C </line>
<line>ATOM 1874 CA ASP H 30 91.013 49.947 -11.594 1.00 7.61 C </line>
</atom-coordinate>
<distance-map>
<line> ASP THR PHE THR TYR TRP LEU LYS CYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 18.52 16.13 14.38 17.65 16.80 14.29 10.45 6.71 3.79 </line>
<line>CYS CA 15.78 13.81 11.57 14.59 13.37 10.91 7.08 3.92 </line>
<line>LYS CA 14.30 12.14 9.27 11.85 10.47 7.67 3.95 </line>
<line>LEU CA 11.98 10.50 6.98 8.68 6.65 3.88 </line>
<line>TRP CA 11.86 11.09 7.33 7.16 3.95 </line>
<line>TYR CA 8.86 8.96 5.69 3.91 </line>
<line>THR CA 5.96 5.86 3.76 </line>
<line>PHE CA 5.60 3.77 </line>
<line>THR CA 3.77 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>SER CA 392</line>
<line>CYS CA 441</line>
<line>LYS CA 357</line>
<line>LEU CA 339</line>
<line>TRP CA 249</line>
<line>TYR CA 236</line>
<line>THR CA 228</line>
<line>PHE CA 322</line>
<line>THR CA 273</line>
<line>ASP CA 248</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XF4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XF4B</entryIDChain>
<sequence>SCKASGYTFTS</sequence>
<secondary-structure>EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 4937 CA SER B 21 49.834 64.339 61.222 1.00 23.58 C </line>
<line>ATOM 4943 CA CYS B 22 53.368 65.755 61.261 1.00 24.91 C </line>
<line>ATOM 4949 CA LYS B 23 53.887 69.462 60.390 1.00 25.28 C </line>
<line>ATOM 4958 CA ALA B 24 57.390 70.306 59.208 1.00 24.41 C </line>
<line>ATOM 4963 CA SER B 25 59.133 73.691 59.290 1.00 22.47 C </line>
<line>ATOM 4969 CA GLY B 26 62.620 75.215 59.208 1.00 21.48 C </line>
<line>ATOM 4973 CA TYR B 27 63.735 73.221 56.157 1.00 20.25 C </line>
<line>ATOM 4985 CA THR B 28 62.618 72.458 52.588 1.00 19.98 C </line>
<line>ATOM 4992 CA PHE B 29 59.897 69.856 53.185 1.00 20.18 C </line>
<line>ATOM 5003 CA THR B 30 60.471 68.165 49.812 1.00 19.43 C </line>
<line>ATOM 5010 CA SER B 31 64.259 67.637 50.001 1.00 19.91 C </line>
</atom-coordinate>
<distance-map>
<line> SER THR PHE THR TYR GLY SER ALA LYS CYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 18.57 16.06 14.01 17.43 17.26 16.91 13.33 9.84 6.59 3.81 </line>
<line>CYS CA 15.78 13.69 11.17 14.34 13.76 13.39 10.01 6.41 3.84 </line>
<line>LYS CA 14.79 12.53 9.39 12.09 11.36 10.52 6.83 3.79 </line>
<line>ALA CA 11.79 10.12 6.54 8.71 7.62 7.17 3.81 </line>
<line>SER CA 12.22 11.05 7.25 7.65 5.59 3.81 </line>
<line>GLY CA 12.04 11.94 8.51 7.17 3.81 </line>
<line>TYR CA 8.33 8.75 5.91 3.82 </line>
<line>THR CA 5.71 5.54 3.81 </line>
<line>PHE CA 5.84 3.82 </line>
<line>THR CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>SER CA 380</line>
<line>CYS CA 433</line>
<line>LYS CA 347</line>
<line>ALA CA 352</line>
<line>SER CA 255</line>
<line>GLY CA 194</line>
<line>TYR CA 230</line>
<line>THR CA 238</line>
<line>PHE CA 322</line>
<line>THR CA 286</line>
<line>SER CA 264</line>
</n14>
</entryChain>
<parallel>
<x>27.655000686645508</x>
<y>-28.381999969482422</y>
<z>-67.0739974975586</z>
</parallel>
<rotation>
<x>-0.28200000524520874</x>
<y>0.9570000171661377</y>
<z>-0.0729999989271164</z>
<x>-0.49900001287460327</x>
<y>-0.210999995470047</y>
<z>-0.8399999737739563</z>
<x>-0.8190000057220459</x>
<y>-0.20000000298023224</y>
<z>0.5370000004768372</z>
</rotation>
<rmsd>0.5579519867897034</rmsd>
<dmax>0.954479992389679</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GHF</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1GHFH</entryIDChain>
<sequence>ARVEA----GFDYW</sequence>
<secondary-structure>E ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 2411 CA ALA H 96 84.619 46.293 -0.041 1.00 2.25 C </line>
<line>ATOM 2416 CA ARG H 97 86.323 47.999 -2.963 1.00 2.00 C </line>
<line>ATOM 2427 CA VAL H 98 88.371 51.043 -2.026 1.00 5.07 C </line>
<line>ATOM 2434 CA GLU H 99 87.052 54.315 -3.385 1.00 3.08 C </line>
<line>ATOM 2443 CA ALA H 100 85.754 57.618 -2.075 1.00 4.84 C </line>
<line>ATOM 2448 CA GLY H 101 84.842 55.453 0.915 1.00 5.23 C </line>
<line>ATOM 2452 CA PHE H 102 84.221 51.658 1.024 1.00 2.00 C </line>
<line>ATOM 2463 CA ASP H 103 82.061 51.599 -2.083 1.00 4.42 C </line>
<line>ATOM 2471 CA TYR H 104 80.489 48.170 -2.468 1.00 2.64 C </line>
<line>ATOM 2483 CA TRP H 105 80.699 45.505 0.176 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> TRP TYR ASP PHE GLY ALA GLU VAL ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.00 5.14 6.23 5.48 9.21 11.56 9.03 6.37 3.79 </line>
<line>ARG CA 6.91 5.86 5.65 5.81 8.53 9.68 6.37 3.79 </line>
<line>VAL CA 9.71 8.40 6.33 5.19 6.37 7.08 3.78 </line>
<line>GLU CA 11.43 9.04 5.83 5.87 4.97 3.78 </line>
<line>ALA CA 13.32 10.82 7.06 6.89 3.80 </line>
<line>GLY CA 10.80 9.13 5.62 3.85 </line>
<line>PHE CA 7.14 6.19 3.78 </line>
<line>ASP CA 6.64 3.79 </line>
<line>TYR CA 3.76 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 436</line>
<line>ARG CA 414</line>
<line>VAL CA 342</line>
<line>GLU CA 233</line>
<line>ALA CA 143</line>
<line>GLY CA 184</line>
<line>PHE CA 277</line>
<line>ASP CA 253</line>
<line>TYR CA 298</line>
<line>TRP CA 353</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XF4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XF4B</entryIDChain>
<sequence>VRGGYRPYYAMDYW</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 5521 CA VAL B 93 61.363 61.462 61.741 1.00 20.87 C </line>
<line>ATOM 5528 CA ARG B 94 63.146 63.526 59.174 1.00 24.90 C </line>
<line>ATOM 5539 CA GLY B 95 65.540 61.413 57.121 1.00 30.77 C </line>
<line>ATOM 5543 CA GLY B 96 69.107 62.416 56.649 1.00 36.74 C </line>
<line>ATOM 5547 CA TYR B 97 70.769 65.137 54.538 0.00 40.32 C </line>
<line>ATOM 5552 CA ARG B 98 73.662 63.080 53.156 0.00 42.45 C </line>
<line>ATOM 5557 CA PRO B 99 75.260 60.779 51.442 0.00 43.00 C </line>
<line>ATOM 5562 CA TYR B 100 74.764 58.207 54.281 0.00 42.11 C </line>
<line>ATOM 5567 CA TYR B 100A 71.083 59.220 54.735 1.00 39.11 C </line>
<line>ATOM 5572 CA ALA B 100B 70.355 58.773 58.497 1.00 33.79 C </line>
<line>ATOM 5577 CA MET B 100C 67.304 59.745 60.594 1.00 28.41 C </line>
<line>ATOM 5585 CA ASP B 101 67.958 62.965 62.443 1.00 26.38 C </line>
<line>ATOM 5593 CA TYR B 102 64.936 64.943 63.477 1.00 25.09 C </line>
<line>ATOM 5605 CA TRP B 103 62.275 63.495 65.790 1.00 23.65 C </line>
</atom-coordinate>
<distance-map>
<line> TRP TYR ASP MET ALA TYR TYR PRO ARG TYR GLY GLY ARG VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 4.62 5.28 6.80 6.29 9.93 12.19 15.68 17.31 15.09 12.40 9.32 6.23 3.75 </line>
<line>ARG CA 6.67 4.87 5.84 5.80 8.66 10.06 13.68 14.63 12.12 9.07 6.57 3.80 </line>
<line>GLY CA 9.49 7.30 6.05 4.24 5.66 6.42 10.17 11.28 9.19 6.92 3.74 </line>
<line>GLY CA 11.46 8.39 5.93 5.09 4.27 4.22 7.44 8.23 5.78 3.82 </line>
<line>TYR CA 14.19 10.68 8.67 8.82 7.51 5.93 8.00 6.98 3.81 </line>
<line>ARG CA 17.01 13.64 10.90 10.34 7.62 4.90 5.12 3.28 </line>
<line>PRO CA 19.54 16.39 13.38 12.17 8.82 5.54 3.86 </line>
<line>TYR CA 17.79 15.05 11.64 9.89 6.13 3.84 </line>
<line>TYR CA 14.77 12.12 9.12 6.99 3.86 </line>
<line>ALA CA 11.86 9.60 6.24 3.83 </line>
<line>MET CA 8.15 6.40 3.77 </line>
<line>ASP CA 6.62 3.76 </line>
<line>TYR CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>VAL CA 448</line>
<line>ARG CA 407</line>
<line>GLY CA 352</line>
<line>GLY CA 242</line>
<line>TYR CA 197</line>
<line>ARG CA 120</line>
<line>PRO CA 84</line>
<line>TYR CA 92</line>
<line>TYR CA 176</line>
<line>ALA CA 196</line>
<line>MET CA 276</line>
<line>ASP CA 253</line>
<line>TYR CA 306</line>
<line>TRP CA 336</line>
</n14>
</entryChain>
<parallel>
<x>18.62299919128418</x>
<y>-9.883000373840332</y>
<z>-60.43899917602539</z>
</parallel>
<rotation>
<x>-0.28299999237060547</x>
<y>0.9449999928474426</y>
<z>0.16300000250339508</z>
<x>-0.47600001096725464</x>
<y>0.009999999776482582</y>
<z>-0.8799999952316284</z>
<x>-0.8330000042915344</x>
<y>-0.32600000500679016</y>
<z>0.44699999690055847</z>
</rotation>
<rmsd>2.222601890563965</rmsd>
<dmax>3.221463918685913</dmax>
</indel>