NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1HHOA-1HBSH
confEVID 1HHOA-1HBSH
pdbIDA 1HHO
pdbIDB 1HBS
pdbChainA A
pdbChainB H
identity 0.3783999979496
indelSize 3
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD------LSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL-SALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>VHLTPVEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHC-DKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG ------ HHHHHHHHHHHHHHHHHH GGGHHHH -HHHHHIIIII HHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHGGG </ss_1>
<ss_2> -- HHHHH HHHHHHHHHHHHH HHHH HHHHH- HHHHHHHHHHHHHH GGG HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1HHO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HHOA</entryIDChain>
<sequence>MPNAL-SALSD</sequence>
<secondary-structure>HHHH -HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 565 CA MET A 76 7.676 21.148 -5.840 1.00 22.48 C </line>
<line>ATOM 573 CA PRO A 77 3.932 21.313 -6.771 1.00 47.93 C </line>
<line>ATOM 580 CA ASN A 78 4.455 24.230 -9.330 1.00 28.56 C </line>
<line>ATOM 588 CA ALA A 79 7.836 22.930 -10.319 1.00 34.73 C </line>
<line>ATOM 593 CA LEU A 80 6.909 19.261 -11.079 1.00 36.58 C </line>
<line>ATOM 601 CA SER A 81 3.761 20.688 -12.528 1.00 20.29 C </line>
<line>ATOM 607 CA ALA A 82 4.228 19.178 -15.956 1.00 39.51 C </line>
<line>ATOM 612 CA LEU A 83 5.699 15.792 -14.891 1.00 23.89 C </line>
<line>ATOM 620 CA SER A 84 2.532 15.418 -12.742 1.00 45.82 C </line>
<line>ATOM 626 CA ASP A 85 0.498 15.763 -15.873 1.00 18.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP SER LEU ALA SER LEU ALA ASN PRO MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 13.46 10.34 10.70 10.87 7.76 5.62 4.82 5.66 3.86 </line>
<line>PRO CA 11.20 8.51 9.98 9.43 5.79 5.62 5.52 3.92 </line>
<line>ASN CA 11.41 9.64 10.18 8.34 4.82 5.81 3.75 </line>
<line>ALA CA 11.66 9.51 8.74 7.67 5.15 3.86 </line>
<line>LEU CA 8.74 6.06 5.29 5.57 3.75 </line>
<line>SER CA 6.79 5.42 5.77 3.77 </line>
<line>ALA CA 5.06 5.23 3.84 </line>
<line>LEU CA 5.29 3.85 </line>
<line>SER CA 3.75 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>MET CA 290</line>
<line>PRO CA 266</line>
<line>ASN CA 195</line>
<line>ALA CA 226</line>
<line>LEU CA 300</line>
<line>SER CA 248</line>
<line>ALA CA 234</line>
<line>LEU CA 315</line>
<line>SER CA 304</line>
<line>ASP CA 226</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HBS</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1HBSH</entryIDChain>
<sequence>LKGTFATLSEL</sequence>
<secondary-structure>HHHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 8255 CA LEU H 81 31.861 61.583 27.712 1.00 25.76 C </line>
<line>ATOM 8263 CA LYS H 82 34.993 63.925 26.666 1.00 24.81 C </line>
<line>ATOM 8272 CA GLY H 83 34.379 62.348 23.430 1.00 27.06 C </line>
<line>ATOM 8276 CA THR H 84 31.297 64.710 23.880 1.00 26.14 C </line>
<line>ATOM 8283 CA PHE H 85 32.510 67.888 25.719 1.00 22.71 C </line>
<line>ATOM 8294 CA ALA H 86 36.164 68.247 24.648 1.00 22.50 C </line>
<line>ATOM 8299 CA THR H 87 35.084 71.299 22.440 1.00 24.50 C </line>
<line>ATOM 8306 CA LEU H 88 33.101 72.870 25.365 1.00 23.54 C </line>
<line>ATOM 8314 CA SER H 89 35.949 71.977 27.956 1.00 23.42 C </line>
<line>ATOM 8320 CA GLU H 90 37.989 74.032 25.555 1.00 20.82 C </line>
<line>ATOM 8329 CA LEU H 91 36.020 77.379 25.872 1.00 18.83 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLU SER LEU THR ALA PHE THR GLY LYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 16.44 14.04 11.17 11.59 11.51 8.50 6.64 4.98 5.03 4.05 </line>
<line>LYS CA 13.52 10.60 8.21 9.24 8.50 4.91 4.77 4.69 3.65 </line>
<line>GLY CA 15.32 12.41 10.75 10.77 9.03 6.28 6.28 3.91 </line>
<line>THR CA 13.67 11.60 9.54 8.49 7.73 6.07 3.87 </line>
<line>PHE CA 10.12 8.23 5.79 5.03 5.39 3.82 </line>
<line>ALA CA 9.21 6.13 4.99 5.59 3.92 </line>
<line>THR CA 7.04 5.06 5.62 3.87 </line>
<line>LEU CA 5.40 5.03 3.95 </line>
<line>SER CA 5.79 3.76 </line>
<line>GLU CA 3.90 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 294</line>
<line>LYS CA 268</line>
<line>GLY CA 212</line>
<line>THR CA 254</line>
<line>PHE CA 311</line>
<line>ALA CA 249</line>
<line>THR CA 224</line>
<line>LEU CA 305</line>
<line>SER CA 302</line>
<line>GLU CA 224</line>
<line>LEU CA 221</line>
</n14>
</entryChain>
<parallel>
<x>-28.084999084472656</x>
<y>-46.50699996948242</y>
<z>-36.23500061035156</z>
</parallel>
<rotation>
<x>-0.9459999799728394</x>
<y>-0.2720000147819519</y>
<z>0.17900000512599945</z>
<x>-0.041999999433755875</x>
<y>-0.44200000166893005</y>
<z>-0.8960000276565552</z>
<x>0.3230000138282776</x>
<y>-0.8550000190734863</y>
<z>0.40700000524520874</z>
</rotation>
<rmsd>1.8146940469741821</rmsd>
<dmax>3.1217129230499268</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1HBS</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1HBSH</entryIDChain>
<sequence>LWGKV--NVDEV</sequence>
<secondary-structure> -- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 7742 CA LEU H 14 14.117 58.819 34.118 1.00 26.79 C </line>
<line>ATOM 7750 CA TRP H 15 15.493 61.754 31.966 1.00 22.56 C </line>
<line>ATOM 7764 CA GLY H 16 12.437 61.186 30.014 1.00 20.38 C </line>
<line>ATOM 7768 CA LYS H 17 10.147 62.954 32.574 1.00 22.52 C </line>
<line>ATOM 7777 CA VAL H 18 12.515 65.748 32.296 1.00 23.19 C </line>
<line>ATOM 7784 CA ASN H 19 11.512 69.108 31.162 1.00 28.32 C </line>
<line>ATOM 7792 CA VAL H 20 15.056 70.959 31.132 1.00 25.26 C </line>
<line>ATOM 7799 CA ASP H 21 14.339 74.531 30.804 1.00 31.19 C </line>
<line>ATOM 7807 CA GLU H 22 12.114 74.394 33.816 1.00 37.29 C </line>
<line>ATOM 7816 CA VAL H 23 14.623 72.350 35.629 1.00 31.10 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU ASP VAL ASN VAL LYS GLY TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.62 15.71 16.06 12.54 11.02 7.34 5.94 5.03 3.89 </line>
<line>TRP CA 11.24 13.21 12.88 9.25 8.40 4.99 5.51 3.67 </line>
<line>GLY CA 12.69 13.75 13.50 10.18 8.06 5.10 3.86 </line>
<line>LYS CA 10.85 11.67 12.44 9.50 6.46 3.67 </line>
<line>VAL CA 7.69 8.79 9.09 5.91 3.69 </line>
<line>ASN CA 6.34 5.95 6.13 4.00 </line>
<line>VAL CA 4.73 5.26 3.66 </line>
<line>ASP CA 5.30 3.75 </line>
<line>GLU CA 3.71 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 297</line>
<line>TRP CA 334</line>
<line>GLY CA 233</line>
<line>LYS CA 228</line>
<line>VAL CA 296</line>
<line>ASN CA 252</line>
<line>VAL CA 313</line>
<line>ASP CA 291</line>
<line>GLU CA 293</line>
<line>VAL CA 371</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HHO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HHOA</entryIDChain>
<sequence>AWGKVGAHAGEY</sequence>
<secondary-structure>HHHHHGGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 88 CA ALA A 13 23.089 14.158 0.643 1.00 23.28 C </line>
<line>ATOM 93 CA TRP A 14 22.393 15.627 -2.751 1.00 29.69 C </line>
<line>ATOM 107 CA GLY A 15 25.313 17.981 -2.329 1.00 72.64 C </line>
<line>ATOM 111 CA LYS A 16 27.480 14.958 -1.831 1.00 30.33 C </line>
<line>ATOM 120 CA VAL A 17 26.068 12.962 -4.839 1.00 33.04 C </line>
<line>ATOM 127 CA GLY A 18 26.945 15.761 -7.257 1.00 35.62 C </line>
<line>ATOM 131 CA ALA A 19 27.770 14.928 -10.841 1.00 46.53 C </line>
<line>ATOM 136 CA HIS A 20 26.957 11.325 -10.499 1.00 70.61 C </line>
<line>ATOM 146 CA ALA A 21 23.333 12.048 -9.875 1.00 25.51 C </line>
<line>ATOM 151 CA GLY A 22 22.358 10.826 -13.415 1.00 21.90 C </line>
<line>ATOM 155 CA GLU A 23 24.597 7.770 -13.111 1.00 19.32 C </line>
<line>ATOM 164 CA TYR A 24 22.745 6.862 -9.994 1.00 17.18 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.90 15.24 14.47 10.73 12.13 12.43 8.94 6.35 5.10 5.33 3.76 </line>
<line>TRP CA 11.38 13.19 11.69 8.03 9.97 9.74 6.41 5.00 5.21 3.77 </line>
<line>GLY CA 13.75 14.87 13.52 9.80 10.67 9.37 5.65 5.66 3.75 </line>
<line>LYS CA 12.43 13.68 13.32 9.51 9.41 9.01 5.51 3.88 </line>
<line>VAL CA 8.65 9.88 9.59 5.80 5.96 6.54 3.80 </line>
<line>GLY CA 10.21 10.18 9.13 5.80 5.49 3.77 </line>
<line>ALA CA 9.54 8.15 7.26 5.38 3.71 </line>
<line>HIS CA 6.16 5.00 5.47 3.75 </line>
<line>ALA CA 5.22 5.51 3.87 </line>
<line>GLY CA 5.25 3.80 </line>
<line>GLU CA 3.74 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 355</line>
<line>TRP CA 373</line>
<line>GLY CA 244</line>
<line>LYS CA 244</line>
<line>VAL CA 301</line>
<line>GLY CA 224</line>
<line>ALA CA 192</line>
<line>HIS CA 252</line>
<line>ALA CA 326</line>
<line>GLY CA 301</line>
<line>GLU CA 309</line>
<line>TYR CA 370</line>
</n14>
</entryChain>
<parallel>
<x>-11.42199993133545</x>
<y>51.89699935913086</y>
<z>37.369998931884766</z>
</parallel>
<rotation>
<x>-0.9980000257492065</x>
<y>-0.0010000000474974513</y>
<z>-0.057999998331069946</z>
<x>0.050999999046325684</x>
<y>-0.47999998927116394</y>
<z>-0.8759999871253967</z>
<x>-0.027000000700354576</x>
<y>-0.8769999742507935</y>
<z>0.4790000021457672</z>
</rotation>
<rmsd>1.2305140495300293</rmsd>
<dmax>2.078192949295044</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1HBS</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1HBSH</entryIDChain>
<sequence>SELHC-DKLHV</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 8314 CA SER H 89 35.949 71.977 27.956 1.00 23.42 C </line>
<line>ATOM 8320 CA GLU H 90 37.989 74.032 25.555 1.00 20.82 C </line>
<line>ATOM 8329 CA LEU H 91 36.020 77.379 25.872 1.00 18.83 C </line>
<line>ATOM 8337 CA HIS H 92 35.154 77.079 29.587 1.00 18.51 C </line>
<line>ATOM 8347 CA CYS H 93 38.860 77.504 30.647 1.00 22.92 C </line>
<line>ATOM 8353 CA ASP H 94 40.207 79.303 27.653 1.00 21.78 C </line>
<line>ATOM 8361 CA LYS H 95 37.471 82.149 27.480 1.00 22.63 C </line>
<line>ATOM 8370 CA LEU H 96 35.002 81.534 30.401 1.00 15.99 C </line>
<line>ATOM 8378 CA HIS H 97 37.365 81.365 33.334 1.00 13.23 C </line>
<line>ATOM 8388 CA VAL H 98 35.185 79.119 35.287 1.00 15.64 C </line>
</atom-coordinate>
<distance-map>
<line> VAL HIS LEU LYS ASP CYS HIS LEU GLU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 10.26 10.91 9.91 10.30 8.48 6.80 5.42 5.79 3.76 </line>
<line>GLU CA 11.33 10.71 9.42 8.36 6.09 6.22 5.79 3.90 </line>
<line>LEU CA 9.61 8.57 6.23 5.24 4.94 5.56 3.83 </line>
<line>HIS CA 6.05 6.11 4.53 5.96 5.85 3.88 </line>
<line>CYS CA 6.14 4.94 5.58 5.79 3.74 </line>
<line>ASP CA 9.14 6.68 6.29 3.95 </line>
<line>LYS CA 8.68 5.91 3.87 </line>
<line>LEU CA 5.45 3.77 </line>
<line>HIS CA 3.69 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 302</line>
<line>GLU CA 224</line>
<line>LEU CA 221</line>
<line>HIS CA 296</line>
<line>CYS CA 231</line>
<line>ASP CA 182</line>
<line>LYS CA 175</line>
<line>LEU CA 246</line>
<line>HIS CA 227</line>
<line>VAL CA 307</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HHO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HHOA</entryIDChain>
<sequence>LSDLHAHKLRV</sequence>
<secondary-structure>HHHIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 612 CA LEU A 83 5.699 15.792 -14.891 1.00 23.89 C </line>
<line>ATOM 620 CA SER A 84 2.532 15.418 -12.742 1.00 45.82 C </line>
<line>ATOM 626 CA ASP A 85 0.498 15.763 -15.873 1.00 18.00 C </line>
<line>ATOM 634 CA LEU A 86 2.770 13.505 -17.910 1.00 20.98 C </line>
<line>ATOM 642 CA HIS A 87 2.892 10.705 -15.405 1.00 23.93 C </line>
<line>ATOM 652 CA ALA A 88 -0.720 10.710 -14.110 1.00 27.68 C </line>
<line>ATOM 657 CA HIS A 89 -2.648 11.981 -17.146 1.00 43.14 C </line>
<line>ATOM 667 CA LYS A 90 -0.819 10.892 -20.099 1.00 39.94 C </line>
<line>ATOM 676 CA LEU A 91 1.068 7.870 -18.784 1.00 15.38 C </line>
<line>ATOM 684 CA ARG A 92 -1.312 6.663 -16.071 1.00 33.09 C </line>
<line>ATOM 695 CA VAL A 93 1.485 5.334 -13.872 1.00 53.73 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ARG LEU LYS HIS ALA HIS LEU ASP SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.32 11.57 9.97 9.68 9.45 8.22 5.83 4.79 5.29 3.85 </line>
<line>SER CA 10.20 10.12 9.78 9.26 7.62 5.88 5.43 5.52 3.75 </line>
<line>ASP CA 10.66 9.28 8.43 6.58 5.08 5.49 5.62 3.80 </line>
<line>LEU CA 9.20 8.18 5.95 4.95 5.68 5.87 3.76 </line>
<line>HIS CA 5.76 5.87 4.77 5.99 5.95 3.84 </line>
<line>ALA CA 5.82 4.54 5.75 5.99 3.81 </line>
<line>HIS CA 8.48 5.59 5.78 3.64 </line>
<line>LYS CA 8.66 5.86 3.80 </line>
<line>LEU CA 5.54 3.81 </line>
<line>ARG CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 315</line>
<line>SER CA 304</line>
<line>ASP CA 226</line>
<line>LEU CA 251</line>
<line>HIS CA 318</line>
<line>ALA CA 254</line>
<line>HIS CA 196</line>
<line>LYS CA 191</line>
<line>LEU CA 251</line>
<line>ARG CA 244</line>
<line>VAL CA 314</line>
</n14>
</entryChain>
<parallel>
<x>35.58300018310547</x>
<y>64.87899780273438</y>
<z>44.75</z>
</parallel>
<rotation>
<x>-0.5740000009536743</x>
<y>-0.6140000224113464</y>
<z>0.5419999957084656</z>
<x>-0.289000004529953</x>
<y>-0.46700000762939453</y>
<z>-0.8360000252723694</z>
<x>0.765999972820282</x>
<y>-0.6359999775886536</y>
<z>0.09099999815225601</z>
</rotation>
<rmsd>1.7136449813842773</rmsd>
<dmax>2.4856629371643066</dmax>
</indel>