NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EA-1XTVA
confEVID 1I5EA-1XTVA
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA A
pdbChainB A
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHHHH EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 442 CA ILE A 55 -4.088 32.734 13.397 1.00 59.58 C </line>
<line>ATOM 450 CA GLU A 56 -2.308 30.005 11.452 1.00 55.24 C </line>
<line>ATOM 459 CA THR A 57 0.985 28.527 12.673 1.00 50.32 C </line>
<line>ATOM 466 CA PRO A 58 3.416 26.676 10.351 1.00 50.00 C </line>
<line>ATOM 473 CA VAL A 59 1.774 23.480 11.575 1.00 52.76 C </line>
<line>ATOM 480 CA SER A 60 -1.971 24.248 11.665 1.00 54.21 C </line>
<line>ATOM 486 CA LYS A 61 -4.660 26.839 12.326 1.00 56.82 C </line>
<line>ATOM 495 CA ALA A 62 -5.208 28.057 15.878 1.00 57.80 C </line>
<line>ATOM 500 CA ARG A 63 -7.315 30.168 18.176 1.00 59.31 C </line>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.69 6.31 5.41 6.02 8.92 11.10 10.11 6.63 3.79 </line>
<line>GLU CA 9.39 8.39 5.64 4.04 5.77 7.70 6.71 3.81 </line>
<line>THR CA 10.39 10.09 6.99 5.90 5.30 5.22 3.84 </line>
<line>PRO CA 14.20 13.73 10.34 8.32 6.05 3.80 </line>
<line>VAL CA 14.23 13.07 9.39 7.30 3.82 </line>
<line>SER CA 12.25 10.30 6.54 3.79 </line>
<line>LYS CA 9.64 7.24 3.79 </line>
<line>ALA CA 6.18 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 138</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XTVA</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 440 CA VAL A 54 63.173 -14.342 121.499 1.00 47.11 C </line>
<line>ATOM 447 CA GLU A 55 63.726 -17.833 120.173 1.00 48.92 C </line>
<line>ATOM 456 CA THR A 56 66.876 -18.374 118.096 1.00 51.73 C </line>
<line>ATOM 463 CA PRO A 57 66.933 -20.712 115.054 1.00 50.31 C </line>
<line>ATOM 470 CA LEU A 58 68.374 -23.368 117.332 1.00 51.67 C </line>
<line>ATOM 478 CA GLY A 59 65.128 -23.563 119.335 1.00 51.47 C </line>
<line>ATOM 482 CA VAL A 60 66.927 -22.015 122.335 1.00 49.77 C </line>
<line>ATOM 489 CA LYS A 61 65.091 -19.096 123.998 1.00 48.11 C </line>
<line>ATOM 498 CA THR A 62 67.269 -16.114 124.912 1.00 53.32 C </line>
<line>ATOM 505 CA LYS A 63 67.038 -12.700 126.574 1.00 56.97 C </line>
<line>ATOM 514 CA GLY A 64 67.453 -9.583 124.452 1.00 47.91 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.05 6.59 5.62 5.70 8.58 9.67 11.22 9.81 6.45 3.78 </line>
<line>GLU CA 10.01 8.85 6.16 4.25 5.69 5.96 7.77 6.69 3.81 </line>
<line>THR CA 10.86 10.20 7.19 6.21 5.59 5.61 5.27 3.84 </line>
<line>PRO CA 14.58 14.03 10.88 9.27 7.40 5.45 3.78 </line>
<line>LEU CA 15.54 14.18 10.55 8.57 5.38 3.82 </line>
<line>GLY CA 15.07 13.19 9.55 6.46 3.83 </line>
<line>VAL CA 12.62 10.23 6.45 3.83 </line>
<line>LYS CA 9.81 7.16 3.80 </line>
<line>THR CA 6.55 3.80 </line>
<line>LYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 125</line>
<line>GLU CA 106</line>
<line>THR CA 94</line>
<line>PRO CA 71</line>
<line>LEU CA 69</line>
<line>GLY CA 76</line>
<line>VAL CA 86</line>
<line>LYS CA 102</line>
<line>THR CA 115</line>
<line>LYS CA 129</line>
<line>GLY CA 140</line>
</n14>
</entryChain>
<parallel>
<x>-67.55400085449219</x>
<y>46.551998138427734</y>
<z>-108.01000213623047</z>
</parallel>
<rotation>
<x>0.367000013589859</x>
<y>-0.5090000033378601</y>
<z>0.7789999842643738</z>
<x>-0.061000000685453415</x>
<y>0.8220000267028809</y>
<z>0.5659999847412109</z>
<x>-0.9279999732971191</x>
<y>-0.2549999952316284</y>
<z>0.2709999978542328</z>
</rotation>
<rmsd>0.6225110292434692</rmsd>
<dmax>0.979403018951416</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
<line>ATOM 516 CA LYS A 65 -5.585 35.850 21.977 1.00 56.39 C </line>
<line>ATOM 525 CA VAL A 66 -4.358 39.425 21.602 1.00 56.04 C </line>
<line>ATOM 532 CA ILE A 67 -4.656 42.533 23.733 1.00 58.94 C </line>
<line>ATOM 540 CA ALA A 68 -8.147 44.052 23.570 1.00 63.94 C </line>
<line>ATOM 545 CA GLY A 69 -7.003 47.165 21.814 1.00 66.94 C </line>
<line>ATOM 549 CA LYS A 70 -7.189 50.283 23.948 1.00 66.67 C </line>
<line>ATOM 558 CA LYS A 71 -5.202 53.506 24.137 1.00 63.64 C </line>
<line>ATOM 567 CA LEU A 72 -2.833 54.150 27.018 1.00 57.25 C </line>
<line>ATOM 575 CA GLY A 73 -1.357 57.323 28.400 1.00 50.36 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.19 14.75 12.33 10.57 7.00 3.79 </line>
<line>LYS CA 22.81 19.18 17.79 14.66 11.40 8.74 6.97 3.80 </line>
<line>VAL CA 19.38 15.76 14.33 11.46 8.18 6.30 3.78 </line>
<line>ILE CA 15.86 12.21 10.99 8.16 5.54 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.75 </line>
<line>GLY CA 13.36 9.66 6.99 3.78 </line>
<line>LYS CA 10.17 6.58 3.79 </line>
<line>LYS CA 6.89 3.79 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 138</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 189</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 237</line>
<line>LYS CA 279</line>
<line>LEU CA 362</line>
<line>GLY CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XTVA</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEEGGGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 514 CA GLY A 64 67.453 -9.583 124.452 1.00 47.91 C </line>
<line>ATOM 518 CA VAL A 65 66.495 -5.901 124.462 1.00 35.42 C </line>
<line>ATOM 525 CA ASP A 66 63.750 -4.127 122.515 1.00 38.61 C </line>
<line>ATOM 533 CA ILE A 67 64.026 -0.333 122.204 1.00 30.73 C </line>
<line>ATOM 541 CA THR A 68 60.306 0.295 121.751 1.00 37.77 C </line>
<line>ATOM 548 CA ASP A 69 61.040 4.034 121.536 1.00 39.47 C </line>
<line>ATOM 556 CA LEU A 70 62.635 3.683 118.062 1.00 31.37 C </line>
<line>ATOM 564 CA ASN A 71 59.039 3.642 116.743 1.00 37.22 C </line>
<line>ATOM 572 CA ASN A 72 58.131 6.952 118.342 1.00 31.41 C </line>
<line>ATOM 580 CA ILE A 73 60.561 9.515 117.019 1.00 28.52 C </line>
<line>ATOM 588 CA VAL A 74 59.793 12.850 115.384 1.00 23.75 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.38 21.62 19.94 17.47 15.49 15.33 12.49 10.12 6.87 3.80 </line>
<line>VAL CA 21.88 18.12 16.51 14.36 12.15 11.71 9.17 6.50 3.80 </line>
<line>ASP CA 18.83 15.05 13.10 10.76 9.06 8.65 5.66 3.82 </line>
<line>ILE CA 15.43 11.66 10.14 8.40 5.93 5.33 3.80 </line>
<line>THR CA 14.09 10.37 7.79 6.16 5.52 3.82 </line>
<line>ASP CA 10.82 7.12 5.21 5.21 3.84 </line>
<line>LEU CA 9.96 6.28 5.57 3.83 </line>
<line>ASN CA 9.34 6.07 3.79 </line>
<line>ASN CA 6.80 3.77 </line>
<line>ILE CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 140</line>
<line>VAL CA 166</line>
<line>ASP CA 191</line>
<line>ILE CA 255</line>
<line>THR CA 250</line>
<line>ASP CA 332</line>
<line>LEU CA 334</line>
<line>ASN CA 291</line>
<line>ASN CA 340</line>
<line>ILE CA 416</line>
<line>VAL CA 436</line>
</n14>
</entryChain>
<parallel>
<x>-68.63600158691406</x>
<y>43.854000091552734</y>
<z>-98.46700286865234</z>
</parallel>
<rotation>
<x>0.7300000190734863</x>
<y>-0.3089999854564667</y>
<z>-0.609000027179718</z>
<x>0.5350000262260437</x>
<y>0.8140000104904175</y>
<z>0.2280000001192093</z>
<x>0.42500001192092896</x>
<y>-0.492000013589859</y>
<z>0.7599999904632568</z>
</rotation>
<rmsd>1.7136130332946777</rmsd>
<dmax>2.381532907485962</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 902 CA VAL A 116 -0.019 70.801 30.601 1.00 38.96 C </line>
<line>ATOM 909 CA LYS A 117 0.675 68.934 27.377 1.00 45.48 C </line>
<line>ATOM 918 CA LEU A 118 -1.347 65.853 26.507 1.00 48.37 C </line>
<line>ATOM 926 CA PRO A 119 -2.020 63.671 23.454 1.00 55.52 C </line>
<line>ATOM 933 CA SER A 120 -5.127 64.895 21.564 1.00 62.02 C </line>
<line>ATOM 939 CA ASP A 121 -7.182 61.694 21.981 1.00 63.80 C </line>
<line>ATOM 947 CA VAL A 122 -7.650 62.532 25.703 1.00 65.24 C </line>
<line>ATOM 954 CA GLU A 123 -11.349 61.630 25.984 1.00 67.33 C </line>
<line>ATOM 963 CA GLU A 124 -10.556 58.140 24.691 1.00 65.97 C </line>
<line>ATOM 972 CA ARG A 125 -7.496 56.760 26.492 1.00 60.68 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.43 17.50 15.29 12.27 14.44 11.94 10.29 6.56 3.79 </line>
<line>LYS CA 14.69 15.81 14.14 10.63 11.97 9.15 7.10 3.79 </line>
<line>LEU CA 10.98 12.15 10.87 7.17 8.48 6.30 3.81 </line>
<line>PRO CA 9.33 10.25 9.88 6.17 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.30 5.39 3.83 </line>
<line>ASP CA 6.69 5.60 5.78 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 217</line>
<line>VAL CA 275</line>
<line>GLU CA 214</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XTVA</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 976 CA LYS A 124 55.422 24.936 109.654 1.00 24.42 C </line>
<line>ATOM 985 CA LYS A 125 54.508 21.312 108.866 1.00 31.40 C </line>
<line>ATOM 994 CA ILE A 126 54.846 18.910 111.782 1.00 34.41 C </line>
<line>ATOM 1002 CA PRO A 127 53.488 15.357 112.315 1.00 31.76 C </line>
<line>ATOM 1009 CA ASP A 128 51.078 14.730 115.185 1.00 37.16 C </line>
<line>ATOM 1017 CA ILE A 129 53.161 14.415 118.335 1.00 36.63 C </line>
<line>ATOM 1025 CA ARG A 130 51.854 11.710 120.668 1.00 42.09 C </line>
<line>ATOM 1036 CA ALA A 131 51.791 13.077 124.204 1.00 44.80 C </line>
<line>ATOM 1041 CA LYS A 132 53.965 11.119 126.660 1.00 45.89 C </line>
<line>ATOM 1050 CA VAL A 133 54.973 8.781 123.784 1.00 34.08 C </line>
<line>ATOM 1057 CA ASP A 134 57.032 10.455 121.032 1.00 23.35 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.49 21.47 21.96 19.12 17.58 13.83 12.39 10.13 6.42 3.82 </line>
<line>LYS CA 16.50 19.49 20.51 17.62 15.44 11.79 9.75 6.96 3.79 </line>
<line>ILE CA 12.72 15.71 16.82 14.06 11.82 8.12 6.58 3.84 </line>
<line>PRO CA 10.61 13.30 14.97 12.22 9.26 6.10 3.80 </line>
<line>ASP CA 9.38 11.16 12.37 9.20 6.31 3.79 </line>
<line>ILE CA 6.16 8.04 8.99 6.17 3.80 </line>
<line>ARG CA 5.34 5.29 6.38 3.79 </line>
<line>ALA CA 6.66 5.36 3.82 </line>
<line>LYS CA 6.44 3.84 </line>
<line>VAL CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 239</line>
<line>LYS CA 217</line>
<line>ILE CA 291</line>
<line>PRO CA 262</line>
<line>ASP CA 242</line>
<line>ILE CA 294</line>
<line>ARG CA 239</line>
<line>ALA CA 213</line>
<line>LYS CA 224</line>
<line>VAL CA 268</line>
<line>ASP CA 354</line>
</n14>
</entryChain>
<parallel>
<x>-57.62099838256836</x>
<y>48.606998443603516</y>
<z>-90.7699966430664</z>
</parallel>
<rotation>
<x>0.3149999976158142</x>
<y>-0.5630000233650208</y>
<z>0.7639999985694885</z>
<x>-0.03700000047683716</x>
<y>0.796999990940094</y>
<z>0.6019999980926514</z>
<x>-0.9480000138282776</x>
<y>-0.21799999475479126</y>
<z>0.23000000417232513</z>
</rotation>
<rmsd>2.9649569988250732</rmsd>
<dmax>4.997879981994629</dmax>
</indel>