NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EA-1XTVB
confEVID 1I5EA-1XTVB
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA A
pdbChainB B
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEEEE EEEEEEEE EEEEEE GGHHHHHHHHHH EEEEEE EEE EEEEE HHHHHHHHHHHH EEEEE EEEHHHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 442 CA ILE A 55 -4.088 32.734 13.397 1.00 59.58 C </line>
<line>ATOM 450 CA GLU A 56 -2.308 30.005 11.452 1.00 55.24 C </line>
<line>ATOM 459 CA THR A 57 0.985 28.527 12.673 1.00 50.32 C </line>
<line>ATOM 466 CA PRO A 58 3.416 26.676 10.351 1.00 50.00 C </line>
<line>ATOM 473 CA VAL A 59 1.774 23.480 11.575 1.00 52.76 C </line>
<line>ATOM 480 CA SER A 60 -1.971 24.248 11.665 1.00 54.21 C </line>
<line>ATOM 486 CA LYS A 61 -4.660 26.839 12.326 1.00 56.82 C </line>
<line>ATOM 495 CA ALA A 62 -5.208 28.057 15.878 1.00 57.80 C </line>
<line>ATOM 500 CA ARG A 63 -7.315 30.168 18.176 1.00 59.31 C </line>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.69 6.31 5.41 6.02 8.92 11.10 10.11 6.63 3.79 </line>
<line>GLU CA 9.39 8.39 5.64 4.04 5.77 7.70 6.71 3.81 </line>
<line>THR CA 10.39 10.09 6.99 5.90 5.30 5.22 3.84 </line>
<line>PRO CA 14.20 13.73 10.34 8.32 6.05 3.80 </line>
<line>VAL CA 14.23 13.07 9.39 7.30 3.82 </line>
<line>SER CA 12.25 10.30 6.54 3.79 </line>
<line>LYS CA 9.64 7.24 3.79 </line>
<line>ALA CA 6.18 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 138</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTVB</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2136 CA VAL B 54 93.009 24.859 112.231 1.00 41.87 C </line>
<line>ATOM 2143 CA GLU B 55 91.891 28.373 111.318 1.00 44.60 C </line>
<line>ATOM 2152 CA THR B 56 88.142 28.971 111.233 1.00 39.85 C </line>
<line>ATOM 2159 CA PRO B 57 86.203 31.497 109.098 1.00 40.09 C </line>
<line>ATOM 2166 CA LEU B 58 86.092 33.973 111.981 1.00 40.88 C </line>
<line>ATOM 2174 CA GLY B 59 89.849 34.477 111.771 1.00 42.17 C </line>
<line>ATOM 2178 CA VAL B 60 90.390 32.646 115.054 1.00 43.55 C </line>
<line>ATOM 2185 CA LYS B 61 92.743 29.646 115.050 1.00 44.42 C </line>
<line>ATOM 2194 CA THR B 62 91.977 26.667 117.292 1.00 35.82 C </line>
<line>ATOM 2201 CA LYS B 63 93.032 23.104 118.105 1.00 40.28 C </line>
<line>ATOM 2210 CA GLY B 64 91.463 20.001 116.659 1.00 38.76 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.75 6.13 5.47 5.56 8.69 10.13 11.44 10.01 6.45 3.80 </line>
<line>GLU CA 9.94 8.67 6.21 4.03 5.87 6.45 8.09 6.86 3.80 </line>
<line>THR CA 11.00 10.27 7.53 6.02 5.76 5.79 5.46 3.83 </line>
<line>PRO CA 14.73 14.08 11.13 9.03 7.37 5.41 3.80 </line>
<line>LEU CA 15.68 14.28 10.78 8.51 5.45 3.80 </line>
<line>GLY CA 15.36 13.40 9.80 6.52 3.80 </line>
<line>VAL CA 12.79 10.36 6.58 3.81 </line>
<line>LYS CA 9.86 7.23 3.81 </line>
<line>THR CA 6.72 3.80 </line>
<line>LYS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 127</line>
<line>GLU CA 106</line>
<line>THR CA 96</line>
<line>PRO CA 74</line>
<line>LEU CA 71</line>
<line>GLY CA 76</line>
<line>VAL CA 86</line>
<line>LYS CA 103</line>
<line>THR CA 115</line>
<line>LYS CA 129</line>
<line>GLY CA 141</line>
</n14>
</entryChain>
<parallel>
<x>-91.56300354003906</x>
<y>-2.007999897003174</y>
<z>-100.49299621582031</z>
</parallel>
<rotation>
<x>-0.8420000076293945</x>
<y>0.27399998903274536</y>
<z>-0.4650000035762787</z>
<x>0.057999998331069946</x>
<y>-0.8100000023841858</y>
<z>-0.5830000042915344</z>
<x>-0.5370000004768372</x>
<y>-0.5180000066757202</y>
<z>0.6660000085830688</z>
</rotation>
<rmsd>0.5722560286521912</rmsd>
<dmax>0.950344979763031</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
<line>ATOM 516 CA LYS A 65 -5.585 35.850 21.977 1.00 56.39 C </line>
<line>ATOM 525 CA VAL A 66 -4.358 39.425 21.602 1.00 56.04 C </line>
<line>ATOM 532 CA ILE A 67 -4.656 42.533 23.733 1.00 58.94 C </line>
<line>ATOM 540 CA ALA A 68 -8.147 44.052 23.570 1.00 63.94 C </line>
<line>ATOM 545 CA GLY A 69 -7.003 47.165 21.814 1.00 66.94 C </line>
<line>ATOM 549 CA LYS A 70 -7.189 50.283 23.948 1.00 66.67 C </line>
<line>ATOM 558 CA LYS A 71 -5.202 53.506 24.137 1.00 63.64 C </line>
<line>ATOM 567 CA LEU A 72 -2.833 54.150 27.018 1.00 57.25 C </line>
<line>ATOM 575 CA GLY A 73 -1.357 57.323 28.400 1.00 50.36 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.19 14.75 12.33 10.57 7.00 3.79 </line>
<line>LYS CA 22.81 19.18 17.79 14.66 11.40 8.74 6.97 3.80 </line>
<line>VAL CA 19.38 15.76 14.33 11.46 8.18 6.30 3.78 </line>
<line>ILE CA 15.86 12.21 10.99 8.16 5.54 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.75 </line>
<line>GLY CA 13.36 9.66 6.99 3.78 </line>
<line>LYS CA 10.17 6.58 3.79 </line>
<line>LYS CA 6.89 3.79 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 138</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 189</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 237</line>
<line>LYS CA 279</line>
<line>LEU CA 362</line>
<line>GLY CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTVB</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2210 CA GLY B 64 91.463 20.001 116.659 1.00 38.76 C </line>
<line>ATOM 2214 CA VAL B 65 91.961 16.325 115.947 1.00 38.33 C </line>
<line>ATOM 2221 CA ASP B 66 93.164 14.615 112.756 1.00 41.98 C </line>
<line>ATOM 2229 CA ILE B 67 92.842 10.833 112.747 1.00 28.97 C </line>
<line>ATOM 2237 CA THR B 68 95.266 10.202 109.905 1.00 36.18 C </line>
<line>ATOM 2244 CA ASP B 69 94.852 6.420 110.221 1.00 36.03 C </line>
<line>ATOM 2252 CA LEU B 70 91.486 6.866 108.498 1.00 28.01 C </line>
<line>ATOM 2260 CA ASN B 71 93.526 6.802 105.297 1.00 31.83 C </line>
<line>ATOM 2268 CA ASN B 72 95.417 3.629 106.094 1.00 22.27 C </line>
<line>ATOM 2276 CA ILE B 73 92.680 1.042 106.404 1.00 26.68 C </line>
<line>ATOM 2284 CA VAL B 74 92.129 -2.312 104.707 1.00 25.30 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.32 21.59 19.88 17.54 15.46 15.41 12.49 10.06 6.87 3.78 </line>
<line>VAL CA 21.76 18.03 16.44 14.37 12.05 11.80 9.22 6.42 3.81 </line>
<line>ASP CA 18.77 14.99 13.04 10.81 9.00 8.74 5.66 3.80 </line>
<line>ILE CA 15.43 11.67 10.14 8.50 5.97 5.47 3.79 </line>
<line>THR CA 13.91 10.14 7.60 5.99 5.23 3.82 </line>
<line>ASP CA 10.68 6.94 5.01 5.11 3.81 </line>
<line>LEU CA 9.95 6.30 5.63 3.80 </line>
<line>ASN CA 9.24 5.93 3.78 </line>
<line>ASN CA 6.93 3.78 </line>
<line>ILE CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 141</line>
<line>VAL CA 168</line>
<line>ASP CA 190</line>
<line>ILE CA 255</line>
<line>THR CA 247</line>
<line>ASP CA 329</line>
<line>LEU CA 330</line>
<line>ASN CA 292</line>
<line>ASN CA 336</line>
<line>ILE CA 405</line>
<line>VAL CA 430</line>
</n14>
</entryChain>
<parallel>
<x>-99.0469970703125</x>
<y>32.02399826049805</y>
<z>-88.38899993896484</z>
</parallel>
<rotation>
<x>-0.21799999475479126</x>
<y>-0.03400000184774399</y>
<z>0.9750000238418579</z>
<x>-0.5479999780654907</x>
<y>-0.8230000138282776</y>
<z>-0.1509999930858612</z>
<x>0.8080000281333923</x>
<y>-0.5680000185966492</y>
<z>0.16099999845027924</z>
</rotation>
<rmsd>1.7038389444351196</rmsd>
<dmax>2.1670401096343994</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 902 CA VAL A 116 -0.019 70.801 30.601 1.00 38.96 C </line>
<line>ATOM 909 CA LYS A 117 0.675 68.934 27.377 1.00 45.48 C </line>
<line>ATOM 918 CA LEU A 118 -1.347 65.853 26.507 1.00 48.37 C </line>
<line>ATOM 926 CA PRO A 119 -2.020 63.671 23.454 1.00 55.52 C </line>
<line>ATOM 933 CA SER A 120 -5.127 64.895 21.564 1.00 62.02 C </line>
<line>ATOM 939 CA ASP A 121 -7.182 61.694 21.981 1.00 63.80 C </line>
<line>ATOM 947 CA VAL A 122 -7.650 62.532 25.703 1.00 65.24 C </line>
<line>ATOM 954 CA GLU A 123 -11.349 61.630 25.984 1.00 67.33 C </line>
<line>ATOM 963 CA GLU A 124 -10.556 58.140 24.691 1.00 65.97 C </line>
<line>ATOM 972 CA ARG A 125 -7.496 56.760 26.492 1.00 60.68 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.43 17.50 15.29 12.27 14.44 11.94 10.29 6.56 3.79 </line>
<line>LYS CA 14.69 15.81 14.14 10.63 11.97 9.15 7.10 3.79 </line>
<line>LEU CA 10.98 12.15 10.87 7.17 8.48 6.30 3.81 </line>
<line>PRO CA 9.33 10.25 9.88 6.17 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.30 5.39 3.83 </line>
<line>ASP CA 6.69 5.60 5.78 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 217</line>
<line>VAL CA 275</line>
<line>GLU CA 214</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTVB</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 2672 CA LYS B 124 92.543 -14.554 97.799 1.00 27.87 C </line>
<line>ATOM 2681 CA LYS B 125 92.560 -10.971 96.571 1.00 26.87 C </line>
<line>ATOM 2690 CA ILE B 126 94.042 -8.500 99.003 1.00 28.42 C </line>
<line>ATOM 2698 CA PRO B 127 95.273 -4.895 98.597 1.00 33.82 C </line>
<line>ATOM 2705 CA ASP B 128 98.909 -4.423 99.576 1.00 43.47 C </line>
<line>ATOM 2713 CA ILE B 129 99.141 -4.202 103.376 1.00 34.60 C </line>
<line>ATOM 2721 CA ARG B 130 101.580 -1.370 104.129 1.00 42.19 C </line>
<line>ATOM 2732 CA ALA B 131 103.901 -2.576 106.876 1.00 49.37 C </line>
<line>ATOM 2737 CA LYS B 132 103.530 -0.748 110.188 1.00 49.53 C </line>
<line>ATOM 2746 CA VAL B 133 101.149 1.744 108.561 1.00 37.13 C </line>
<line>ATOM 2753 CA ASP B 134 97.904 -0.036 107.676 1.00 27.57 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.36 21.34 21.56 18.84 17.19 13.48 12.10 10.07 6.35 3.79 </line>
<line>LYS CA 16.48 19.47 20.26 17.47 15.19 11.64 9.60 6.96 3.77 </line>
<line>ILE CA 12.72 15.71 16.59 13.94 11.57 7.97 6.37 3.83 </line>
<line>PRO CA 10.63 13.34 14.82 12.18 9.10 6.19 3.79 </line>
<line>ASP CA 9.27 11.13 12.14 9.03 6.10 3.81 </line>
<line>ILE CA 6.11 8.14 8.81 6.13 3.81 </line>
<line>ARG CA 5.28 5.43 6.40 3.79 </line>
<line>ALA CA 6.56 5.39 3.80 </line>
<line>LYS CA 6.20 3.81 </line>
<line>VAL CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 255</line>
<line>LYS CA 230</line>
<line>ILE CA 296</line>
<line>PRO CA 266</line>
<line>ASP CA 245</line>
<line>ILE CA 302</line>
<line>ARG CA 244</line>
<line>ALA CA 208</line>
<line>LYS CA 221</line>
<line>VAL CA 265</line>
<line>ASP CA 349</line>
</n14>
</entryChain>
<parallel>
<x>-102.04499816894531</x>
<y>71.00599670410156</y>
<z>-76.19599914550781</z>
</parallel>
<rotation>
<x>-0.8299999833106995</x>
<y>0.328000009059906</y>
<z>-0.44999998807907104</z>
<x>0.019999999552965164</x>
<y>-0.7900000214576721</y>
<z>-0.6129999756813049</z>
<x>-0.5569999814033508</x>
<y>-0.5180000066757202</y>
<z>0.6489999890327454</z>
</rotation>
<rmsd>2.881213903427124</rmsd>
<dmax>4.960775852203369</dmax>
</indel>