NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EA-1XTVC
confEVID 1I5EA-1XTVC
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA A
pdbChainB C
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHHH EEEEE EEEHHHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 442 CA ILE A 55 -4.088 32.734 13.397 1.00 59.58 C </line>
<line>ATOM 450 CA GLU A 56 -2.308 30.005 11.452 1.00 55.24 C </line>
<line>ATOM 459 CA THR A 57 0.985 28.527 12.673 1.00 50.32 C </line>
<line>ATOM 466 CA PRO A 58 3.416 26.676 10.351 1.00 50.00 C </line>
<line>ATOM 473 CA VAL A 59 1.774 23.480 11.575 1.00 52.76 C </line>
<line>ATOM 480 CA SER A 60 -1.971 24.248 11.665 1.00 54.21 C </line>
<line>ATOM 486 CA LYS A 61 -4.660 26.839 12.326 1.00 56.82 C </line>
<line>ATOM 495 CA ALA A 62 -5.208 28.057 15.878 1.00 57.80 C </line>
<line>ATOM 500 CA ARG A 63 -7.315 30.168 18.176 1.00 59.31 C </line>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.69 6.31 5.41 6.02 8.92 11.10 10.11 6.63 3.79 </line>
<line>GLU CA 9.39 8.39 5.64 4.04 5.77 7.70 6.71 3.81 </line>
<line>THR CA 10.39 10.09 6.99 5.90 5.30 5.22 3.84 </line>
<line>PRO CA 14.20 13.73 10.34 8.32 6.05 3.80 </line>
<line>VAL CA 14.23 13.07 9.39 7.30 3.82 </line>
<line>SER CA 12.25 10.30 6.54 3.79 </line>
<line>LYS CA 9.64 7.24 3.79 </line>
<line>ALA CA 6.18 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 138</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1XTVC</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3832 CA VAL C 54 44.422 5.360 93.422 1.00 42.64 C </line>
<line>ATOM 3839 CA GLU C 55 42.694 8.136 95.317 1.00 43.60 C </line>
<line>ATOM 3848 CA THR C 56 44.485 11.464 95.588 1.00 33.37 C </line>
<line>ATOM 3855 CA PRO C 57 44.084 13.475 98.802 1.00 36.57 C </line>
<line>ATOM 3862 CA LEU C 58 41.834 15.780 96.778 1.00 38.29 C </line>
<line>ATOM 3870 CA GLY C 59 39.262 13.005 96.642 1.00 39.46 C </line>
<line>ATOM 3874 CA VAL C 60 39.791 12.236 92.957 1.00 46.35 C </line>
<line>ATOM 3881 CA LYS C 61 40.437 8.886 91.268 1.00 41.75 C </line>
<line>ATOM 3890 CA THR C 62 42.998 8.614 88.486 1.00 39.32 C </line>
<line>ATOM 3897 CA LYS C 63 44.654 5.822 86.484 1.00 42.36 C </line>
<line>ATOM 3906 CA GLY C 64 48.060 4.614 87.560 1.00 29.95 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.94 6.96 6.08 5.74 8.30 9.77 11.25 9.74 6.48 3.78 </line>
<line>GLU CA 10.07 9.34 6.85 4.70 5.55 6.10 7.83 6.53 3.79 </line>
<line>THR CA 11.14 10.71 7.80 6.46 5.44 5.55 5.20 3.81 </line>
<line>PRO CA 14.86 14.51 11.46 9.55 7.36 5.30 3.80 </line>
<line>LEU CA 15.76 14.60 11.02 8.94 5.60 3.79 </line>
<line>GLY CA 15.18 13.56 9.99 6.87 3.80 </line>
<line>VAL CA 12.47 10.33 6.59 3.81 </line>
<line>LYS CA 9.49 7.08 3.79 </line>
<line>THR CA 6.52 3.81 </line>
<line>LYS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 128</line>
<line>GLU CA 106</line>
<line>THR CA 92</line>
<line>PRO CA 71</line>
<line>LEU CA 68</line>
<line>GLY CA 77</line>
<line>VAL CA 89</line>
<line>LYS CA 104</line>
<line>THR CA 116</line>
<line>LYS CA 127</line>
<line>GLY CA 141</line>
</n14>
</entryChain>
<parallel>
<x>-44.10100173950195</x>
<y>17.07699966430664</y>
<z>-81.66300201416016</z>
</parallel>
<rotation>
<x>0.550000011920929</x>
<y>0.5379999876022339</y>
<z>0.6389999985694885</z>
<x>0.550000011920929</x>
<y>-0.8090000152587891</y>
<z>0.2070000022649765</z>
<x>0.6290000081062317</x>
<y>0.2370000034570694</y>
<z>-0.7409999966621399</z>
</rotation>
<rmsd>0.744608998298645</rmsd>
<dmax>1.0608839988708496</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
<line>ATOM 516 CA LYS A 65 -5.585 35.850 21.977 1.00 56.39 C </line>
<line>ATOM 525 CA VAL A 66 -4.358 39.425 21.602 1.00 56.04 C </line>
<line>ATOM 532 CA ILE A 67 -4.656 42.533 23.733 1.00 58.94 C </line>
<line>ATOM 540 CA ALA A 68 -8.147 44.052 23.570 1.00 63.94 C </line>
<line>ATOM 545 CA GLY A 69 -7.003 47.165 21.814 1.00 66.94 C </line>
<line>ATOM 549 CA LYS A 70 -7.189 50.283 23.948 1.00 66.67 C </line>
<line>ATOM 558 CA LYS A 71 -5.202 53.506 24.137 1.00 63.64 C </line>
<line>ATOM 567 CA LEU A 72 -2.833 54.150 27.018 1.00 57.25 C </line>
<line>ATOM 575 CA GLY A 73 -1.357 57.323 28.400 1.00 50.36 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.19 14.75 12.33 10.57 7.00 3.79 </line>
<line>LYS CA 22.81 19.18 17.79 14.66 11.40 8.74 6.97 3.80 </line>
<line>VAL CA 19.38 15.76 14.33 11.46 8.18 6.30 3.78 </line>
<line>ILE CA 15.86 12.21 10.99 8.16 5.54 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.75 </line>
<line>GLY CA 13.36 9.66 6.99 3.78 </line>
<line>LYS CA 10.17 6.58 3.79 </line>
<line>LYS CA 6.89 3.79 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 138</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 189</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 237</line>
<line>LYS CA 279</line>
<line>LEU CA 362</line>
<line>GLY CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1XTVC</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEEGGGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 3906 CA GLY C 64 48.060 4.614 87.560 1.00 29.95 C </line>
<line>ATOM 3910 CA VAL C 65 50.866 2.138 87.212 1.00 24.80 C </line>
<line>ATOM 3917 CA ASP C 66 51.720 -0.544 89.755 1.00 23.61 C </line>
<line>ATOM 3925 CA ILE C 67 54.711 -2.720 88.904 1.00 24.09 C </line>
<line>ATOM 3933 CA THR C 68 53.540 -5.752 90.882 1.00 35.25 C </line>
<line>ATOM 3940 CA ASP C 69 56.696 -7.743 90.149 1.00 30.90 C </line>
<line>ATOM 3948 CA LEU C 70 58.776 -5.273 92.185 1.00 27.69 C </line>
<line>ATOM 3956 CA ASN C 71 57.618 -7.451 95.098 1.00 34.73 C </line>
<line>ATOM 3964 CA ASN C 72 58.771 -10.634 93.371 1.00 26.85 C </line>
<line>ATOM 3972 CA ILE C 73 62.454 -10.267 92.661 1.00 17.43 C </line>
<line>ATOM 3980 CA VAL C 74 65.395 -12.457 93.601 1.00 19.09 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.07 21.32 19.52 17.14 15.30 15.30 12.19 9.99 6.69 3.76 </line>
<line>VAL CA 21.56 17.83 16.23 14.13 11.93 11.84 9.10 6.42 3.79 </line>
<line>ASP CA 18.54 14.77 12.83 10.54 8.83 8.76 5.63 3.80 </line>
<line>ILE CA 15.20 11.45 9.95 8.32 5.81 5.54 3.80 </line>
<line>THR CA 13.89 10.15 7.58 6.11 5.42 3.80 </line>
<line>ASP CA 10.48 6.77 4.80 5.04 3.82 </line>
<line>LEU CA 9.87 6.22 5.49 3.82 </line>
<line>ASN CA 9.37 6.10 3.80 </line>
<line>ASN CA 6.87 3.77 </line>
<line>ILE CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 141</line>
<line>VAL CA 168</line>
<line>ASP CA 193</line>
<line>ILE CA 257</line>
<line>THR CA 257</line>
<line>ASP CA 335</line>
<line>LEU CA 329</line>
<line>ASN CA 287</line>
<line>ASN CA 332</line>
<line>ILE CA 412</line>
<line>VAL CA 433</line>
</n14>
</entryChain>
<parallel>
<x>-60.16400146484375</x>
<y>46.38600158691406</y>
<z>-68.02200317382812</z>
</parallel>
<rotation>
<x>0.597000002861023</x>
<y>0.6819999814033508</y>
<z>-0.421999990940094</z>
<x>0.15399999916553497</x>
<y>-0.6140000224113464</y>
<z>-0.7739999890327454</z>
<x>-0.7870000004768372</x>
<y>0.39800000190734863</y>
<z>-0.47099998593330383</z>
</rotation>
<rmsd>1.797394037246704</rmsd>
<dmax>2.467963933944702</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 902 CA VAL A 116 -0.019 70.801 30.601 1.00 38.96 C </line>
<line>ATOM 909 CA LYS A 117 0.675 68.934 27.377 1.00 45.48 C </line>
<line>ATOM 918 CA LEU A 118 -1.347 65.853 26.507 1.00 48.37 C </line>
<line>ATOM 926 CA PRO A 119 -2.020 63.671 23.454 1.00 55.52 C </line>
<line>ATOM 933 CA SER A 120 -5.127 64.895 21.564 1.00 62.02 C </line>
<line>ATOM 939 CA ASP A 121 -7.182 61.694 21.981 1.00 63.80 C </line>
<line>ATOM 947 CA VAL A 122 -7.650 62.532 25.703 1.00 65.24 C </line>
<line>ATOM 954 CA GLU A 123 -11.349 61.630 25.984 1.00 67.33 C </line>
<line>ATOM 963 CA GLU A 124 -10.556 58.140 24.691 1.00 65.97 C </line>
<line>ATOM 972 CA ARG A 125 -7.496 56.760 26.492 1.00 60.68 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.43 17.50 15.29 12.27 14.44 11.94 10.29 6.56 3.79 </line>
<line>LYS CA 14.69 15.81 14.14 10.63 11.97 9.15 7.10 3.79 </line>
<line>LEU CA 10.98 12.15 10.87 7.17 8.48 6.30 3.81 </line>
<line>PRO CA 9.33 10.25 9.88 6.17 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.30 5.39 3.83 </line>
<line>ASP CA 6.69 5.60 5.78 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 217</line>
<line>VAL CA 275</line>
<line>GLU CA 214</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1XTVC</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 4368 CA LYS C 124 75.298 -21.863 97.406 1.00 30.61 C </line>
<line>ATOM 4377 CA LYS C 125 72.509 -20.336 99.453 1.00 32.11 C </line>
<line>ATOM 4386 CA ILE C 126 69.362 -19.270 97.600 1.00 29.87 C </line>
<line>ATOM 4394 CA PRO C 127 65.803 -18.146 98.486 1.00 28.53 C </line>
<line>ATOM 4401 CA ASP C 128 62.797 -20.141 97.402 1.00 31.18 C </line>
<line>ATOM 4409 CA ILE C 129 62.165 -19.116 93.807 1.00 24.80 C </line>
<line>ATOM 4417 CA ARG C 130 58.380 -18.983 93.276 1.00 29.37 C </line>
<line>ATOM 4428 CA ALA C 131 57.653 -20.561 89.912 1.00 28.50 C </line>
<line>ATOM 4433 CA LYS C 132 55.777 -18.445 87.390 1.00 27.23 C </line>
<line>ATOM 4442 CA VAL C 133 55.939 -15.504 89.765 1.00 27.18 C </line>
<line>ATOM 4449 CA ASP C 134 59.472 -14.516 90.767 1.00 27.81 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.67 21.76 22.21 19.21 17.65 13.89 12.62 10.25 6.48 3.78 </line>
<line>LYS CA 16.71 19.79 20.71 17.66 15.48 11.85 9.93 7.12 3.80 </line>
<line>ILE CA 12.93 15.99 17.01 14.07 11.81 8.14 6.63 3.84 </line>
<line>PRO CA 10.62 13.43 14.96 12.07 9.11 6.01 3.77 </line>
<line>ASP CA 9.31 11.26 12.34 9.10 6.15 3.79 </line>
<line>ILE CA 6.14 8.26 9.08 6.13 3.82 </line>
<line>ARG CA 5.24 5.51 6.46 3.79 </line>
<line>ALA CA 6.37 5.34 3.79 </line>
<line>LYS CA 6.36 3.78 </line>
<line>VAL CA 3.80 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 250</line>
<line>LYS CA 218</line>
<line>ILE CA 281</line>
<line>PRO CA 259</line>
<line>ASP CA 242</line>
<line>ILE CA 298</line>
<line>ARG CA 235</line>
<line>ALA CA 211</line>
<line>LYS CA 223</line>
<line>VAL CA 263</line>
<line>ASP CA 345</line>
</n14>
</entryChain>
<parallel>
<x>-68.94999694824219</x>
<y>84.71900177001953</y>
<z>-69.71900177001953</z>
</parallel>
<rotation>
<x>0.578000009059906</x>
<y>0.4410000145435333</y>
<z>0.6859999895095825</z>
<x>0.4729999899864197</x>
<y>-0.8669999837875366</y>
<z>0.15800000727176666</z>
<x>0.6650000214576721</x>
<y>0.2329999953508377</y>
<z>-0.7099999785423279</z>
</rotation>
<rmsd>2.9812378883361816</rmsd>
<dmax>4.930873870849609</dmax>
</indel>