NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EA-1XTVE
confEVID 1I5EA-1XTVE
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA A
pdbChainB E
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHHHH EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 442 CA ILE A 55 -4.088 32.734 13.397 1.00 59.58 C </line>
<line>ATOM 450 CA GLU A 56 -2.308 30.005 11.452 1.00 55.24 C </line>
<line>ATOM 459 CA THR A 57 0.985 28.527 12.673 1.00 50.32 C </line>
<line>ATOM 466 CA PRO A 58 3.416 26.676 10.351 1.00 50.00 C </line>
<line>ATOM 473 CA VAL A 59 1.774 23.480 11.575 1.00 52.76 C </line>
<line>ATOM 480 CA SER A 60 -1.971 24.248 11.665 1.00 54.21 C </line>
<line>ATOM 486 CA LYS A 61 -4.660 26.839 12.326 1.00 56.82 C </line>
<line>ATOM 495 CA ALA A 62 -5.208 28.057 15.878 1.00 57.80 C </line>
<line>ATOM 500 CA ARG A 63 -7.315 30.168 18.176 1.00 59.31 C </line>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.69 6.31 5.41 6.02 8.92 11.10 10.11 6.63 3.79 </line>
<line>GLU CA 9.39 8.39 5.64 4.04 5.77 7.70 6.71 3.81 </line>
<line>THR CA 10.39 10.09 6.99 5.90 5.30 5.22 3.84 </line>
<line>PRO CA 14.20 13.73 10.34 8.32 6.05 3.80 </line>
<line>VAL CA 14.23 13.07 9.39 7.30 3.82 </line>
<line>SER CA 12.25 10.30 6.54 3.79 </line>
<line>LYS CA 9.64 7.24 3.79 </line>
<line>ALA CA 6.18 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 138</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1XTVE</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 7224 CA VAL E 54 62.979 54.100 28.969 1.00 45.00 C </line>
<line>ATOM 7231 CA GLU E 55 63.548 57.584 30.307 1.00 46.59 C </line>
<line>ATOM 7240 CA THR E 56 66.704 58.134 32.352 1.00 50.00 C </line>
<line>ATOM 7247 CA PRO E 57 66.792 60.462 35.399 1.00 52.17 C </line>
<line>ATOM 7254 CA LEU E 58 68.209 63.118 33.114 1.00 51.86 C </line>
<line>ATOM 7262 CA GLY E 59 64.950 63.323 31.137 1.00 49.52 C </line>
<line>ATOM 7266 CA VAL E 60 66.729 61.779 28.120 1.00 46.54 C </line>
<line>ATOM 7273 CA LYS E 61 64.880 58.865 26.466 1.00 46.43 C </line>
<line>ATOM 7282 CA THR E 62 67.053 55.884 25.532 1.00 55.64 C </line>
<line>ATOM 7289 CA LYS E 63 66.809 52.469 23.863 1.00 58.17 C </line>
<line>ATOM 7298 CA GLY E 64 67.247 49.352 25.981 1.00 45.34 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.05 6.59 5.62 5.71 8.59 9.68 11.22 9.82 6.45 3.78 </line>
<line>GLU CA 10.01 8.85 6.16 4.26 5.70 5.97 7.76 6.69 3.80 </line>
<line>THR CA 10.86 10.21 7.19 6.21 5.59 5.61 5.26 3.84 </line>
<line>PRO CA 14.57 14.03 10.88 9.27 7.40 5.45 3.78 </line>
<line>LEU CA 15.53 14.18 10.54 8.57 5.38 3.82 </line>
<line>GLY CA 15.07 13.20 9.55 6.46 3.83 </line>
<line>VAL CA 12.62 10.24 6.45 3.83 </line>
<line>LYS CA 9.82 7.17 3.81 </line>
<line>THR CA 6.55 3.81 </line>
<line>LYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 125</line>
<line>GLU CA 106</line>
<line>THR CA 94</line>
<line>PRO CA 71</line>
<line>LEU CA 69</line>
<line>GLY CA 76</line>
<line>VAL CA 86</line>
<line>LYS CA 102</line>
<line>THR CA 115</line>
<line>LYS CA 129</line>
<line>GLY CA 140</line>
</n14>
</entryChain>
<parallel>
<x>-67.36900329589844</x>
<y>-31.170000076293945</y>
<z>-17.618000030517578</z>
</parallel>
<rotation>
<x>0.37400001287460327</x>
<y>-0.5070000290870667</y>
<z>0.7770000100135803</z>
<x>0.05900000035762787</x>
<y>-0.8230000138282776</y>
<z>-0.5649999976158142</z>
<x>0.925000011920929</x>
<y>0.25699999928474426</y>
<z>-0.27799999713897705</z>
</rotation>
<rmsd>0.6214330196380615</rmsd>
<dmax>0.9773690104484558</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
<line>ATOM 516 CA LYS A 65 -5.585 35.850 21.977 1.00 56.39 C </line>
<line>ATOM 525 CA VAL A 66 -4.358 39.425 21.602 1.00 56.04 C </line>
<line>ATOM 532 CA ILE A 67 -4.656 42.533 23.733 1.00 58.94 C </line>
<line>ATOM 540 CA ALA A 68 -8.147 44.052 23.570 1.00 63.94 C </line>
<line>ATOM 545 CA GLY A 69 -7.003 47.165 21.814 1.00 66.94 C </line>
<line>ATOM 549 CA LYS A 70 -7.189 50.283 23.948 1.00 66.67 C </line>
<line>ATOM 558 CA LYS A 71 -5.202 53.506 24.137 1.00 63.64 C </line>
<line>ATOM 567 CA LEU A 72 -2.833 54.150 27.018 1.00 57.25 C </line>
<line>ATOM 575 CA GLY A 73 -1.357 57.323 28.400 1.00 50.36 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.19 14.75 12.33 10.57 7.00 3.79 </line>
<line>LYS CA 22.81 19.18 17.79 14.66 11.40 8.74 6.97 3.80 </line>
<line>VAL CA 19.38 15.76 14.33 11.46 8.18 6.30 3.78 </line>
<line>ILE CA 15.86 12.21 10.99 8.16 5.54 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.75 </line>
<line>GLY CA 13.36 9.66 6.99 3.78 </line>
<line>LYS CA 10.17 6.58 3.79 </line>
<line>LYS CA 6.89 3.79 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 138</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 189</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 237</line>
<line>LYS CA 279</line>
<line>LEU CA 362</line>
<line>GLY CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1XTVE</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEEGGGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 7298 CA GLY E 64 67.247 49.352 25.981 1.00 45.34 C </line>
<line>ATOM 7302 CA VAL E 65 66.284 45.670 25.970 1.00 33.67 C </line>
<line>ATOM 7309 CA ASP E 66 63.550 43.900 27.927 1.00 32.05 C </line>
<line>ATOM 7317 CA ILE E 67 63.828 40.098 28.233 1.00 29.29 C </line>
<line>ATOM 7325 CA THR E 68 60.119 39.458 28.709 1.00 36.84 C </line>
<line>ATOM 7332 CA ASP E 69 60.853 35.725 28.913 1.00 40.75 C </line>
<line>ATOM 7340 CA LEU E 70 62.477 36.078 32.373 1.00 29.41 C </line>
<line>ATOM 7348 CA ASN E 71 58.891 36.105 33.720 1.00 37.69 C </line>
<line>ATOM 7356 CA ASN E 72 57.975 32.802 32.115 1.00 32.49 C </line>
<line>ATOM 7364 CA ILE E 73 60.416 30.235 33.412 1.00 28.85 C </line>
<line>ATOM 7372 CA VAL E 74 59.643 26.896 35.052 1.00 22.39 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.38 21.62 19.94 17.47 15.49 15.34 12.50 10.12 6.87 3.81 </line>
<line>VAL CA 21.89 18.11 16.50 14.36 12.14 11.71 9.17 6.50 3.80 </line>
<line>ASP CA 18.85 15.05 13.11 10.77 9.06 8.66 5.67 3.82 </line>
<line>ILE CA 15.44 11.65 10.13 8.39 5.93 5.33 3.79 </line>
<line>THR CA 14.08 10.36 7.78 6.15 5.51 3.81 </line>
<line>ASP CA 10.82 7.11 5.20 5.21 3.84 </line>
<line>LEU CA 9.98 6.28 5.57 3.83 </line>
<line>ASN CA 9.34 6.07 3.78 </line>
<line>ASN CA 6.80 3.77 </line>
<line>ILE CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 140</line>
<line>VAL CA 166</line>
<line>ASP CA 191</line>
<line>ILE CA 255</line>
<line>THR CA 250</line>
<line>ASP CA 332</line>
<line>LEU CA 333</line>
<line>ASN CA 291</line>
<line>ASN CA 340</line>
<line>ILE CA 416</line>
<line>VAL CA 436</line>
</n14>
</entryChain>
<parallel>
<x>-68.4530029296875</x>
<y>2.75</y>
<z>-6.78000020980835</z>
</parallel>
<rotation>
<x>0.7269999980926514</x>
<y>-0.3050000071525574</y>
<z>-0.6150000095367432</z>
<x>-0.5339999794960022</x>
<y>-0.8149999976158142</y>
<z>-0.22599999606609344</z>
<x>-0.4320000112056732</x>
<y>0.492000013589859</y>
<z>-0.7549999952316284</z>
</rotation>
<rmsd>1.7142490148544312</rmsd>
<dmax>2.3746299743652344</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 902 CA VAL A 116 -0.019 70.801 30.601 1.00 38.96 C </line>
<line>ATOM 909 CA LYS A 117 0.675 68.934 27.377 1.00 45.48 C </line>
<line>ATOM 918 CA LEU A 118 -1.347 65.853 26.507 1.00 48.37 C </line>
<line>ATOM 926 CA PRO A 119 -2.020 63.671 23.454 1.00 55.52 C </line>
<line>ATOM 933 CA SER A 120 -5.127 64.895 21.564 1.00 62.02 C </line>
<line>ATOM 939 CA ASP A 121 -7.182 61.694 21.981 1.00 63.80 C </line>
<line>ATOM 947 CA VAL A 122 -7.650 62.532 25.703 1.00 65.24 C </line>
<line>ATOM 954 CA GLU A 123 -11.349 61.630 25.984 1.00 67.33 C </line>
<line>ATOM 963 CA GLU A 124 -10.556 58.140 24.691 1.00 65.97 C </line>
<line>ATOM 972 CA ARG A 125 -7.496 56.760 26.492 1.00 60.68 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.43 17.50 15.29 12.27 14.44 11.94 10.29 6.56 3.79 </line>
<line>LYS CA 14.69 15.81 14.14 10.63 11.97 9.15 7.10 3.79 </line>
<line>LEU CA 10.98 12.15 10.87 7.17 8.48 6.30 3.81 </line>
<line>PRO CA 9.33 10.25 9.88 6.17 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.30 5.39 3.83 </line>
<line>ASP CA 6.69 5.60 5.78 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 217</line>
<line>VAL CA 275</line>
<line>GLU CA 214</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1XTVE</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 7760 CA LYS E 124 55.329 14.785 40.786 1.00 31.02 C </line>
<line>ATOM 7769 CA LYS E 125 54.422 18.420 41.590 1.00 27.01 C </line>
<line>ATOM 7778 CA ILE E 126 54.745 20.828 38.683 1.00 34.50 C </line>
<line>ATOM 7786 CA PRO E 127 53.383 24.383 38.163 1.00 32.29 C </line>
<line>ATOM 7793 CA ASP E 128 50.945 25.006 35.318 1.00 37.36 C </line>
<line>ATOM 7801 CA ILE E 129 53.004 25.331 32.151 1.00 37.71 C </line>
<line>ATOM 7809 CA ARG E 130 51.679 28.044 29.834 1.00 41.56 C </line>
<line>ATOM 7820 CA ALA E 131 51.585 26.689 26.295 1.00 43.52 C </line>
<line>ATOM 7825 CA LYS E 132 53.737 28.659 23.830 1.00 45.41 C </line>
<line>ATOM 7834 CA VAL E 133 54.772 30.976 26.703 1.00 32.49 C </line>
<line>ATOM 7841 CA ASP E 134 56.856 29.302 29.428 1.00 24.97 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.50 21.47 21.97 19.12 17.58 13.83 12.39 10.14 6.43 3.83 </line>
<line>LYS CA 16.50 19.48 20.51 17.62 15.44 11.78 9.74 6.96 3.79 </line>
<line>ILE CA 12.72 15.70 16.82 14.06 11.82 8.12 6.57 3.84 </line>
<line>PRO CA 10.61 13.29 14.96 12.22 9.26 6.10 3.80 </line>
<line>ASP CA 9.39 11.16 12.37 9.20 6.31 3.79 </line>
<line>ILE CA 6.17 8.04 8.99 6.18 3.81 </line>
<line>ARG CA 5.34 5.29 6.38 3.79 </line>
<line>ALA CA 6.67 5.36 3.82 </line>
<line>LYS CA 6.44 3.83 </line>
<line>VAL CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 240</line>
<line>LYS CA 217</line>
<line>ILE CA 291</line>
<line>PRO CA 262</line>
<line>ASP CA 242</line>
<line>ILE CA 294</line>
<line>ARG CA 239</line>
<line>ALA CA 213</line>
<line>LYS CA 224</line>
<line>VAL CA 269</line>
<line>ASP CA 354</line>
</n14>
</entryChain>
<parallel>
<x>-57.48099899291992</x>
<y>41.650001525878906</y>
<z>-8.916000366210938</z>
</parallel>
<rotation>
<x>0.3230000138282776</x>
<y>-0.5609999895095825</y>
<z>0.7620000243186951</z>
<x>0.03500000014901161</x>
<y>-0.7979999780654907</y>
<z>-0.6019999980926514</z>
<x>0.9459999799728394</x>
<y>0.22100000083446503</y>
<z>-0.23800000548362732</z>
</rotation>
<rmsd>2.965851068496704</rmsd>
<dmax>4.999180793762207</dmax>
</indel>