NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EA-1XTVH
confEVID 1I5EA-1XTVH
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA A
pdbChainB H
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVI-AGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHGGG EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 442 CA ILE A 55 -4.088 32.734 13.397 1.00 59.58 C </line>
<line>ATOM 450 CA GLU A 56 -2.308 30.005 11.452 1.00 55.24 C </line>
<line>ATOM 459 CA THR A 57 0.985 28.527 12.673 1.00 50.32 C </line>
<line>ATOM 466 CA PRO A 58 3.416 26.676 10.351 1.00 50.00 C </line>
<line>ATOM 473 CA VAL A 59 1.774 23.480 11.575 1.00 52.76 C </line>
<line>ATOM 480 CA SER A 60 -1.971 24.248 11.665 1.00 54.21 C </line>
<line>ATOM 486 CA LYS A 61 -4.660 26.839 12.326 1.00 56.82 C </line>
<line>ATOM 495 CA ALA A 62 -5.208 28.057 15.878 1.00 57.80 C </line>
<line>ATOM 500 CA ARG A 63 -7.315 30.168 18.176 1.00 59.31 C </line>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.69 6.31 5.41 6.02 8.92 11.10 10.11 6.63 3.79 </line>
<line>GLU CA 9.39 8.39 5.64 4.04 5.77 7.70 6.71 3.81 </line>
<line>THR CA 10.39 10.09 6.99 5.90 5.30 5.22 3.84 </line>
<line>PRO CA 14.20 13.73 10.34 8.32 6.05 3.80 </line>
<line>VAL CA 14.23 13.07 9.39 7.30 3.82 </line>
<line>SER CA 12.25 10.30 6.54 3.79 </line>
<line>LYS CA 9.64 7.24 3.79 </line>
<line>ALA CA 6.18 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 138</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1XTVH</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 12312 CA VAL H 54 91.466 34.720 72.578 1.00 24.57 C </line>
<line>ATOM 12319 CA GLU H 55 93.829 37.684 72.297 1.00 31.92 C </line>
<line>ATOM 12328 CA THR H 56 92.573 40.889 70.714 1.00 30.97 C </line>
<line>ATOM 12335 CA PRO H 57 94.566 43.437 68.648 1.00 28.18 C </line>
<line>ATOM 12342 CA LEU H 58 94.777 45.595 71.762 1.00 25.56 C </line>
<line>ATOM 12350 CA GLY H 59 97.178 43.058 73.252 1.00 29.06 C </line>
<line>ATOM 12354 CA VAL H 60 94.824 41.758 75.896 1.00 24.54 C </line>
<line>ATOM 12361 CA LYS H 61 93.475 38.235 76.407 1.00 29.77 C </line>
<line>ATOM 12370 CA THR H 62 89.750 37.710 76.919 1.00 30.70 C </line>
<line>ATOM 12377 CA LYS H 63 87.334 34.800 77.248 1.00 28.35 C </line>
<line>ATOM 12386 CA GLY H 64 84.935 33.781 74.535 1.00 23.69 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.88 6.24 5.54 5.57 8.47 10.13 11.40 10.05 6.54 3.80 </line>
<line>GLU CA 9.97 8.66 6.16 4.16 5.53 6.40 7.99 6.85 3.79 </line>
<line>THR CA 11.11 10.35 7.52 6.35 5.72 5.69 5.30 3.84 </line>
<line>PRO CA 14.85 14.17 11.15 9.40 7.44 5.31 3.79 </line>
<line>LEU CA 15.62 14.21 10.68 8.80 5.64 3.80 </line>
<line>GLY CA 15.41 13.46 9.86 6.85 3.77 </line>
<line>VAL CA 12.78 10.31 6.57 3.81 </line>
<line>LYS CA 9.81 7.09 3.80 </line>
<line>THR CA 6.66 3.80 </line>
<line>LYS CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 127</line>
<line>GLU CA 106</line>
<line>THR CA 93</line>
<line>PRO CA 70</line>
<line>LEU CA 68</line>
<line>GLY CA 77</line>
<line>VAL CA 88</line>
<line>LYS CA 104</line>
<line>THR CA 117</line>
<line>LYS CA 128</line>
<line>GLY CA 138</line>
</n14>
</entryChain>
<parallel>
<x>-94.66500091552734</x>
<y>-12.432999610900879</y>
<z>-60.737998962402344</z>
</parallel>
<rotation>
<x>-0.10700000077486038</x>
<y>-0.23399999737739563</y>
<z>-0.9660000205039978</z>
<x>0.5799999833106995</x>
<y>-0.8040000200271606</y>
<z>0.13099999725818634</z>
<x>-0.8080000281333923</x>
<y>-0.5460000038146973</y>
<z>0.22100000083446503</z>
</rotation>
<rmsd>0.6228539943695068</rmsd>
<dmax>0.9597910046577454</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>RAKVI-AGKKL</sequence>
<secondary-structure>EEEE - E</secondary-structure>
<atom-coordinate>
<line>ATOM 500 CA ARG A 63 -7.315 30.168 18.176 1.00 59.31 C </line>
<line>ATOM 511 CA ALA A 64 -5.110 32.649 20.010 1.00 55.71 C </line>
<line>ATOM 516 CA LYS A 65 -5.585 35.850 21.977 1.00 56.39 C </line>
<line>ATOM 525 CA VAL A 66 -4.358 39.425 21.602 1.00 56.04 C </line>
<line>ATOM 532 CA ILE A 67 -4.656 42.533 23.733 1.00 58.94 C </line>
<line>ATOM 540 CA ALA A 68 -8.147 44.052 23.570 1.00 63.94 C </line>
<line>ATOM 545 CA GLY A 69 -7.003 47.165 21.814 1.00 66.94 C </line>
<line>ATOM 549 CA LYS A 70 -7.189 50.283 23.948 1.00 66.67 C </line>
<line>ATOM 558 CA LYS A 71 -5.202 53.506 24.137 1.00 63.64 C </line>
<line>ATOM 567 CA LEU A 72 -2.833 54.150 27.018 1.00 57.25 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS LYS GLY ALA ILE VAL LYS ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 25.95 24.18 20.93 17.38 14.92 13.81 10.30 7.05 3.79 </line>
<line>ALA CA 22.73 21.26 18.19 14.75 12.33 10.57 7.00 3.79 </line>
<line>LYS CA 19.18 17.79 14.66 11.40 8.74 6.97 3.80 </line>
<line>VAL CA 15.76 14.33 11.46 8.18 6.30 3.78 </line>
<line>ILE CA 12.21 10.99 8.16 5.54 3.81 </line>
<line>ALA CA 11.92 9.92 6.32 3.75 </line>
<line>GLY CA 9.66 6.99 3.78 </line>
<line>LYS CA 6.58 3.79 </line>
<line>LYS CA 3.79 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 129</line>
<line>ALA CA 138</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 189</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 237</line>
<line>LYS CA 279</line>
<line>LEU CA 362</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1XTVH</entryIDChain>
<sequence>KGVDITDLNNI</sequence>
<secondary-structure>EEEEEGGGG E</secondary-structure>
<atom-coordinate>
<line>ATOM 12377 CA LYS H 63 87.334 34.800 77.248 1.00 28.35 C </line>
<line>ATOM 12386 CA GLY H 64 84.935 33.781 74.535 1.00 23.69 C </line>
<line>ATOM 12390 CA VAL H 65 82.707 30.951 73.373 1.00 21.01 C </line>
<line>ATOM 12397 CA ASP H 66 83.535 28.260 70.829 1.00 27.21 C </line>
<line>ATOM 12405 CA ILE H 67 80.729 25.968 69.640 1.00 25.67 C </line>
<line>ATOM 12413 CA THR H 68 82.928 23.065 68.483 1.00 22.19 C </line>
<line>ATOM 12420 CA ASP H 69 79.810 20.992 67.774 1.00 19.08 C </line>
<line>ATOM 12428 CA LEU H 70 79.352 23.160 64.715 1.00 24.22 C </line>
<line>ATOM 12436 CA ASN H 71 81.751 20.831 62.879 1.00 27.26 C </line>
<line>ATOM 12444 CA ASN H 72 79.683 17.762 63.643 1.00 16.79 C </line>
<line>ATOM 12452 CA ILE H 73 76.318 18.344 62.039 1.00 9.71 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ASN ASN LEU ASP THR ILE ASP VAL GLY LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 24.97 23.11 20.80 18.88 18.36 15.30 13.40 9.92 7.16 3.76 </line>
<line>GLY CA 21.65 20.07 17.71 15.51 15.35 12.47 10.13 6.80 3.78 </line>
<line>VAL CA 18.12 16.67 14.61 12.12 11.79 9.28 6.53 3.79 </line>
<line>ASP CA 15.09 13.29 11.03 8.99 8.72 5.73 3.81 </line>
<line>ILE CA 11.63 10.22 8.55 5.83 5.39 3.82 </line>
<line>THR CA 10.37 7.88 6.15 5.20 3.81 </line>
<line>ASP CA 7.22 5.25 5.27 3.78 </line>
<line>LEU CA 6.29 5.51 3.81 </line>
<line>ASN CA 6.03 3.78 </line>
<line>ASN CA 3.77 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LYS CA 128</line>
<line>GLY CA 138</line>
<line>VAL CA 164</line>
<line>ASP CA 187</line>
<line>ILE CA 250</line>
<line>THR CA 243</line>
<line>ASP CA 325</line>
<line>LEU CA 330</line>
<line>ASN CA 293</line>
<line>ASN CA 344</line>
<line>ILE CA 419</line>
</n14>
</entryChain>
<parallel>
<x>-88.68900299072266</x>
<y>12.92300033569336</y>
<z>-48.27000045776367</z>
</parallel>
<rotation>
<x>-0.6399999856948853</x>
<y>-0.17900000512599945</y>
<z>-0.746999979019165</z>
<x>0.6880000233650208</x>
<y>-0.5659999847412109</y>
<z>-0.45399999618530273</z>
<x>-0.34200000762939453</x>
<y>-0.8050000071525574</y>
<z>0.48500001430511475</z>
</rotation>
<rmsd>1.9099390506744385</rmsd>
<dmax>2.999825954437256</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1I5EA</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 902 CA VAL A 116 -0.019 70.801 30.601 1.00 38.96 C </line>
<line>ATOM 909 CA LYS A 117 0.675 68.934 27.377 1.00 45.48 C </line>
<line>ATOM 918 CA LEU A 118 -1.347 65.853 26.507 1.00 48.37 C </line>
<line>ATOM 926 CA PRO A 119 -2.020 63.671 23.454 1.00 55.52 C </line>
<line>ATOM 933 CA SER A 120 -5.127 64.895 21.564 1.00 62.02 C </line>
<line>ATOM 939 CA ASP A 121 -7.182 61.694 21.981 1.00 63.80 C </line>
<line>ATOM 947 CA VAL A 122 -7.650 62.532 25.703 1.00 65.24 C </line>
<line>ATOM 954 CA GLU A 123 -11.349 61.630 25.984 1.00 67.33 C </line>
<line>ATOM 963 CA GLU A 124 -10.556 58.140 24.691 1.00 65.97 C </line>
<line>ATOM 972 CA ARG A 125 -7.496 56.760 26.492 1.00 60.68 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.43 17.50 15.29 12.27 14.44 11.94 10.29 6.56 3.79 </line>
<line>LYS CA 14.69 15.81 14.14 10.63 11.97 9.15 7.10 3.79 </line>
<line>LEU CA 10.98 12.15 10.87 7.17 8.48 6.30 3.81 </line>
<line>PRO CA 9.33 10.25 9.88 6.17 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.30 5.39 3.83 </line>
<line>ASP CA 6.69 5.60 5.78 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 217</line>
<line>VAL CA 275</line>
<line>GLU CA 214</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1XTVH</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 12848 CA LYS H 124 69.210 6.531 50.933 1.00 27.40 C </line>
<line>ATOM 12857 CA LYS H 125 72.474 8.423 50.669 1.00 28.65 C </line>
<line>ATOM 12866 CA ILE H 126 73.666 9.539 54.087 1.00 25.37 C </line>
<line>ATOM 12874 CA PRO H 127 77.177 10.682 55.132 1.00 27.74 C </line>
<line>ATOM 12881 CA ASP H 128 79.075 8.776 57.774 1.00 28.90 C </line>
<line>ATOM 12889 CA ILE H 129 77.258 9.564 60.978 1.00 23.83 C </line>
<line>ATOM 12897 CA ARG H 130 79.929 9.389 63.717 1.00 34.93 C </line>
<line>ATOM 12908 CA ALA H 131 78.504 7.688 66.810 1.00 26.25 C </line>
<line>ATOM 12913 CA LYS H 132 78.087 9.870 69.867 1.00 29.38 C </line>
<line>ATOM 12922 CA VAL H 133 79.647 12.750 67.933 1.00 28.61 C </line>
<line>ATOM 12929 CA ASP H 134 77.457 13.925 65.076 1.00 22.99 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 17.96 20.90 21.18 18.43 16.93 13.22 12.21 9.92 6.23 3.78 </line>
<line>LYS CA 16.21 19.19 20.05 17.25 15.06 11.42 9.70 6.87 3.79 </line>
<line>ILE CA 12.42 15.42 16.39 13.74 11.49 7.77 6.59 3.84 </line>
<line>PRO CA 10.46 13.20 14.79 12.13 9.11 5.95 3.77 </line>
<line>ASP CA 9.08 10.92 12.18 9.12 6.04 3.77 </line>
<line>ILE CA 5.99 8.01 8.93 6.25 3.83 </line>
<line>ARG CA 5.34 5.40 6.44 3.81 </line>
<line>ALA CA 6.56 5.31 3.78 </line>
<line>LYS CA 6.31 3.80 </line>
<line>VAL CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 262</line>
<line>LYS CA 230</line>
<line>ILE CA 300</line>
<line>PRO CA 265</line>
<line>ASP CA 245</line>
<line>ILE CA 299</line>
<line>ARG CA 240</line>
<line>ALA CA 209</line>
<line>LYS CA 225</line>
<line>VAL CA 265</line>
<line>ASP CA 350</line>
</n14>
</entryChain>
<parallel>
<x>-80.26799774169922</x>
<y>56.138999938964844</y>
<z>-33.22700119018555</z>
</parallel>
<rotation>
<x>-0.0989999994635582</x>
<y>-0.16500000655651093</y>
<z>-0.9810000061988831</z>
<x>0.5019999742507935</x>
<y>-0.8600000143051147</y>
<z>0.09399999678134918</z>
<x>-0.859000027179718</x>
<y>-0.48399999737739563</y>
<z>0.1679999977350235</z>
</rotation>
<rmsd>2.778834104537964</rmsd>
<dmax>4.794205188751221</dmax>
</indel>