NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVA
confEVID 1I5EB-1XTVA
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB A
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHHHH EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XTVA</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 440 CA VAL A 54 63.173 -14.342 121.499 1.00 47.11 C </line>
<line>ATOM 447 CA GLU A 55 63.726 -17.833 120.173 1.00 48.92 C </line>
<line>ATOM 456 CA THR A 56 66.876 -18.374 118.096 1.00 51.73 C </line>
<line>ATOM 463 CA PRO A 57 66.933 -20.712 115.054 1.00 50.31 C </line>
<line>ATOM 470 CA LEU A 58 68.374 -23.368 117.332 1.00 51.67 C </line>
<line>ATOM 478 CA GLY A 59 65.128 -23.563 119.335 1.00 51.47 C </line>
<line>ATOM 482 CA VAL A 60 66.927 -22.015 122.335 1.00 49.77 C </line>
<line>ATOM 489 CA LYS A 61 65.091 -19.096 123.998 1.00 48.11 C </line>
<line>ATOM 498 CA THR A 62 67.269 -16.114 124.912 1.00 53.32 C </line>
<line>ATOM 505 CA LYS A 63 67.038 -12.700 126.574 1.00 56.97 C </line>
<line>ATOM 514 CA GLY A 64 67.453 -9.583 124.452 1.00 47.91 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.05 6.59 5.62 5.70 8.58 9.67 11.22 9.81 6.45 3.78 </line>
<line>GLU CA 10.01 8.85 6.16 4.25 5.69 5.96 7.77 6.69 3.81 </line>
<line>THR CA 10.86 10.20 7.19 6.21 5.59 5.61 5.27 3.84 </line>
<line>PRO CA 14.58 14.03 10.88 9.27 7.40 5.45 3.78 </line>
<line>LEU CA 15.54 14.18 10.55 8.57 5.38 3.82 </line>
<line>GLY CA 15.07 13.19 9.55 6.46 3.83 </line>
<line>VAL CA 12.62 10.23 6.45 3.83 </line>
<line>LYS CA 9.81 7.16 3.80 </line>
<line>THR CA 6.55 3.80 </line>
<line>LYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 125</line>
<line>GLU CA 106</line>
<line>THR CA 94</line>
<line>PRO CA 71</line>
<line>LEU CA 69</line>
<line>GLY CA 76</line>
<line>VAL CA 86</line>
<line>LYS CA 102</line>
<line>THR CA 115</line>
<line>LYS CA 129</line>
<line>GLY CA 140</line>
</n14>
</entryChain>
<parallel>
<x>-48.72999954223633</x>
<y>74.73699951171875</y>
<z>-63.9010009765625</z>
</parallel>
<rotation>
<x>-0.9190000295639038</x>
<y>0.19499999284744263</y>
<z>-0.3440000116825104</z>
<x>0.019999999552965164</x>
<y>-0.847000002861023</y>
<z>-0.5320000052452087</z>
<x>-0.39399999380111694</x>
<y>-0.4950000047683716</y>
<z>0.7739999890327454</z>
</rotation>
<rmsd>0.6279370188713074</rmsd>
<dmax>0.9929770231246948</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
<line>ATOM 2175 CA GLY B 73 21.757 28.569 37.014 1.00 53.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 22.80 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 19.37 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 15.85 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 13.35 9.65 6.97 3.79 </line>
<line>LYS CA 10.17 6.59 3.79 </line>
<line>LYS CA 6.91 3.80 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
<line>GLY CA 417</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XTVA</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEEGGGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 514 CA GLY A 64 67.453 -9.583 124.452 1.00 47.91 C </line>
<line>ATOM 518 CA VAL A 65 66.495 -5.901 124.462 1.00 35.42 C </line>
<line>ATOM 525 CA ASP A 66 63.750 -4.127 122.515 1.00 38.61 C </line>
<line>ATOM 533 CA ILE A 67 64.026 -0.333 122.204 1.00 30.73 C </line>
<line>ATOM 541 CA THR A 68 60.306 0.295 121.751 1.00 37.77 C </line>
<line>ATOM 548 CA ASP A 69 61.040 4.034 121.536 1.00 39.47 C </line>
<line>ATOM 556 CA LEU A 70 62.635 3.683 118.062 1.00 31.37 C </line>
<line>ATOM 564 CA ASN A 71 59.039 3.642 116.743 1.00 37.22 C </line>
<line>ATOM 572 CA ASN A 72 58.131 6.952 118.342 1.00 31.41 C </line>
<line>ATOM 580 CA ILE A 73 60.561 9.515 117.019 1.00 28.52 C </line>
<line>ATOM 588 CA VAL A 74 59.793 12.850 115.384 1.00 23.75 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.38 21.62 19.94 17.47 15.49 15.33 12.49 10.12 6.87 3.80 </line>
<line>VAL CA 21.88 18.12 16.51 14.36 12.15 11.71 9.17 6.50 3.80 </line>
<line>ASP CA 18.83 15.05 13.10 10.76 9.06 8.65 5.66 3.82 </line>
<line>ILE CA 15.43 11.66 10.14 8.40 5.93 5.33 3.80 </line>
<line>THR CA 14.09 10.37 7.79 6.16 5.52 3.82 </line>
<line>ASP CA 10.82 7.12 5.21 5.21 3.84 </line>
<line>LEU CA 9.96 6.28 5.57 3.83 </line>
<line>ASN CA 9.34 6.07 3.79 </line>
<line>ASN CA 6.80 3.77 </line>
<line>ILE CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 140</line>
<line>VAL CA 166</line>
<line>ASP CA 191</line>
<line>ILE CA 255</line>
<line>THR CA 250</line>
<line>ASP CA 332</line>
<line>LEU CA 334</line>
<line>ASN CA 291</line>
<line>ASN CA 340</line>
<line>ILE CA 416</line>
<line>VAL CA 436</line>
</n14>
</entryChain>
<parallel>
<x>-44.65700149536133</x>
<y>38.724998474121094</y>
<z>-71.77799987792969</z>
</parallel>
<rotation>
<x>0.3330000042915344</x>
<y>0.9129999876022339</y>
<z>-0.23399999737739563</z>
<x>0.30399999022483826</x>
<y>-0.33899998664855957</y>
<z>-0.8899999856948853</z>
<x>-0.8930000066757202</x>
<y>0.22499999403953552</y>
<z>-0.39100000262260437</z>
</rotation>
<rmsd>1.7124619483947754</rmsd>
<dmax>2.368774890899658</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1XTVA</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 976 CA LYS A 124 55.422 24.936 109.654 1.00 24.42 C </line>
<line>ATOM 985 CA LYS A 125 54.508 21.312 108.866 1.00 31.40 C </line>
<line>ATOM 994 CA ILE A 126 54.846 18.910 111.782 1.00 34.41 C </line>
<line>ATOM 1002 CA PRO A 127 53.488 15.357 112.315 1.00 31.76 C </line>
<line>ATOM 1009 CA ASP A 128 51.078 14.730 115.185 1.00 37.16 C </line>
<line>ATOM 1017 CA ILE A 129 53.161 14.415 118.335 1.00 36.63 C </line>
<line>ATOM 1025 CA ARG A 130 51.854 11.710 120.668 1.00 42.09 C </line>
<line>ATOM 1036 CA ALA A 131 51.791 13.077 124.204 1.00 44.80 C </line>
<line>ATOM 1041 CA LYS A 132 53.965 11.119 126.660 1.00 45.89 C </line>
<line>ATOM 1050 CA VAL A 133 54.973 8.781 123.784 1.00 34.08 C </line>
<line>ATOM 1057 CA ASP A 134 57.032 10.455 121.032 1.00 23.35 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.49 21.47 21.96 19.12 17.58 13.83 12.39 10.13 6.42 3.82 </line>
<line>LYS CA 16.50 19.49 20.51 17.62 15.44 11.79 9.75 6.96 3.79 </line>
<line>ILE CA 12.72 15.71 16.82 14.06 11.82 8.12 6.58 3.84 </line>
<line>PRO CA 10.61 13.30 14.97 12.22 9.26 6.10 3.80 </line>
<line>ASP CA 9.38 11.16 12.37 9.20 6.31 3.79 </line>
<line>ILE CA 6.16 8.04 8.99 6.17 3.80 </line>
<line>ARG CA 5.34 5.29 6.38 3.79 </line>
<line>ALA CA 6.66 5.36 3.82 </line>
<line>LYS CA 6.44 3.84 </line>
<line>VAL CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 239</line>
<line>LYS CA 217</line>
<line>ILE CA 291</line>
<line>PRO CA 262</line>
<line>ASP CA 242</line>
<line>ILE CA 294</line>
<line>ARG CA 239</line>
<line>ALA CA 213</line>
<line>LYS CA 224</line>
<line>VAL CA 268</line>
<line>ASP CA 354</line>
</n14>
</entryChain>
<parallel>
<x>-24.746000289916992</x>
<y>6.743000030517578</y>
<z>-79.24199676513672</z>
</parallel>
<rotation>
<x>-0.9399999976158142</x>
<y>0.20499999821186066</y>
<z>-0.27300000190734863</z>
<x>-0.02199999988079071</x>
<y>-0.8330000042915344</y>
<z>-0.5519999861717224</z>
<x>-0.3409999907016754</x>
<y>-0.5130000114440918</y>
<z>0.7879999876022339</z>
</rotation>
<rmsd>2.964353084564209</rmsd>
<dmax>5.0013628005981445</dmax>
</indel>