NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVB
confEVID 1I5EB-1XTVB
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB B
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEEEE EEEEEEEE EEEEEE GGHHHHHHHHHH EEEEEE EEE EEEEE HHHHHHHHHHHH EEEEE EEEHHHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTVB</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2136 CA VAL B 54 93.009 24.859 112.231 1.00 41.87 C </line>
<line>ATOM 2143 CA GLU B 55 91.891 28.373 111.318 1.00 44.60 C </line>
<line>ATOM 2152 CA THR B 56 88.142 28.971 111.233 1.00 39.85 C </line>
<line>ATOM 2159 CA PRO B 57 86.203 31.497 109.098 1.00 40.09 C </line>
<line>ATOM 2166 CA LEU B 58 86.092 33.973 111.981 1.00 40.88 C </line>
<line>ATOM 2174 CA GLY B 59 89.849 34.477 111.771 1.00 42.17 C </line>
<line>ATOM 2178 CA VAL B 60 90.390 32.646 115.054 1.00 43.55 C </line>
<line>ATOM 2185 CA LYS B 61 92.743 29.646 115.050 1.00 44.42 C </line>
<line>ATOM 2194 CA THR B 62 91.977 26.667 117.292 1.00 35.82 C </line>
<line>ATOM 2201 CA LYS B 63 93.032 23.104 118.105 1.00 40.28 C </line>
<line>ATOM 2210 CA GLY B 64 91.463 20.001 116.659 1.00 38.76 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.75 6.13 5.47 5.56 8.69 10.13 11.44 10.01 6.45 3.80 </line>
<line>GLU CA 9.94 8.67 6.21 4.03 5.87 6.45 8.09 6.86 3.80 </line>
<line>THR CA 11.00 10.27 7.53 6.02 5.76 5.79 5.46 3.83 </line>
<line>PRO CA 14.73 14.08 11.13 9.03 7.37 5.41 3.80 </line>
<line>LEU CA 15.68 14.28 10.78 8.51 5.45 3.80 </line>
<line>GLY CA 15.36 13.40 9.80 6.52 3.80 </line>
<line>VAL CA 12.79 10.36 6.58 3.81 </line>
<line>LYS CA 9.86 7.23 3.81 </line>
<line>THR CA 6.72 3.80 </line>
<line>LYS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 127</line>
<line>GLU CA 106</line>
<line>THR CA 96</line>
<line>PRO CA 74</line>
<line>LEU CA 71</line>
<line>GLY CA 76</line>
<line>VAL CA 86</line>
<line>LYS CA 103</line>
<line>THR CA 115</line>
<line>LYS CA 129</line>
<line>GLY CA 141</line>
</n14>
</entryChain>
<parallel>
<x>-72.73999786376953</x>
<y>26.176000595092773</y>
<z>-56.382999420166016</z>
</parallel>
<rotation>
<x>0.5139999985694885</x>
<y>-0.45899999141693115</y>
<z>0.7250000238418579</z>
<x>0.0010000000474974513</x>
<y>0.8450000286102295</y>
<z>0.5339999794960022</z>
<x>-0.8579999804496765</x>
<y>-0.27399998903274536</y>
<z>0.4350000023841858</z>
</rotation>
<rmsd>0.5779780149459839</rmsd>
<dmax>0.9633769989013672</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
<line>ATOM 2175 CA GLY B 73 21.757 28.569 37.014 1.00 53.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 22.80 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 19.37 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 15.85 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 13.35 9.65 6.97 3.79 </line>
<line>LYS CA 10.17 6.59 3.79 </line>
<line>LYS CA 6.91 3.80 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
<line>GLY CA 417</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTVB</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2210 CA GLY B 64 91.463 20.001 116.659 1.00 38.76 C </line>
<line>ATOM 2214 CA VAL B 65 91.961 16.325 115.947 1.00 38.33 C </line>
<line>ATOM 2221 CA ASP B 66 93.164 14.615 112.756 1.00 41.98 C </line>
<line>ATOM 2229 CA ILE B 67 92.842 10.833 112.747 1.00 28.97 C </line>
<line>ATOM 2237 CA THR B 68 95.266 10.202 109.905 1.00 36.18 C </line>
<line>ATOM 2244 CA ASP B 69 94.852 6.420 110.221 1.00 36.03 C </line>
<line>ATOM 2252 CA LEU B 70 91.486 6.866 108.498 1.00 28.01 C </line>
<line>ATOM 2260 CA ASN B 71 93.526 6.802 105.297 1.00 31.83 C </line>
<line>ATOM 2268 CA ASN B 72 95.417 3.629 106.094 1.00 22.27 C </line>
<line>ATOM 2276 CA ILE B 73 92.680 1.042 106.404 1.00 26.68 C </line>
<line>ATOM 2284 CA VAL B 74 92.129 -2.312 104.707 1.00 25.30 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.32 21.59 19.88 17.54 15.46 15.41 12.49 10.06 6.87 3.78 </line>
<line>VAL CA 21.76 18.03 16.44 14.37 12.05 11.80 9.22 6.42 3.81 </line>
<line>ASP CA 18.77 14.99 13.04 10.81 9.00 8.74 5.66 3.80 </line>
<line>ILE CA 15.43 11.67 10.14 8.50 5.97 5.47 3.79 </line>
<line>THR CA 13.91 10.14 7.60 5.99 5.23 3.82 </line>
<line>ASP CA 10.68 6.94 5.01 5.11 3.81 </line>
<line>LEU CA 9.95 6.30 5.63 3.80 </line>
<line>ASN CA 9.24 5.93 3.78 </line>
<line>ASN CA 6.93 3.78 </line>
<line>ILE CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 141</line>
<line>VAL CA 168</line>
<line>ASP CA 190</line>
<line>ILE CA 255</line>
<line>THR CA 247</line>
<line>ASP CA 329</line>
<line>LEU CA 330</line>
<line>ASN CA 292</line>
<line>ASN CA 336</line>
<line>ILE CA 405</line>
<line>VAL CA 430</line>
</n14>
</entryChain>
<parallel>
<x>-75.06800079345703</x>
<y>26.893999099731445</y>
<z>-61.70000076293945</z>
</parallel>
<rotation>
<x>-0.8169999718666077</x>
<y>-0.5550000071525574</y>
<z>-0.1550000011920929</z>
<x>-0.3720000088214874</x>
<y>0.3019999861717224</y>
<z>0.878000020980835</z>
<x>-0.4399999976158142</x>
<y>0.7749999761581421</y>
<z>-0.45399999618530273</z>
</rotation>
<rmsd>1.7034330368041992</rmsd>
<dmax>2.167341947555542</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTVB</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 2672 CA LYS B 124 92.543 -14.554 97.799 1.00 27.87 C </line>
<line>ATOM 2681 CA LYS B 125 92.560 -10.971 96.571 1.00 26.87 C </line>
<line>ATOM 2690 CA ILE B 126 94.042 -8.500 99.003 1.00 28.42 C </line>
<line>ATOM 2698 CA PRO B 127 95.273 -4.895 98.597 1.00 33.82 C </line>
<line>ATOM 2705 CA ASP B 128 98.909 -4.423 99.576 1.00 43.47 C </line>
<line>ATOM 2713 CA ILE B 129 99.141 -4.202 103.376 1.00 34.60 C </line>
<line>ATOM 2721 CA ARG B 130 101.580 -1.370 104.129 1.00 42.19 C </line>
<line>ATOM 2732 CA ALA B 131 103.901 -2.576 106.876 1.00 49.37 C </line>
<line>ATOM 2737 CA LYS B 132 103.530 -0.748 110.188 1.00 49.53 C </line>
<line>ATOM 2746 CA VAL B 133 101.149 1.744 108.561 1.00 37.13 C </line>
<line>ATOM 2753 CA ASP B 134 97.904 -0.036 107.676 1.00 27.57 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.36 21.34 21.56 18.84 17.19 13.48 12.10 10.07 6.35 3.79 </line>
<line>LYS CA 16.48 19.47 20.26 17.47 15.19 11.64 9.60 6.96 3.77 </line>
<line>ILE CA 12.72 15.71 16.59 13.94 11.57 7.97 6.37 3.83 </line>
<line>PRO CA 10.63 13.34 14.82 12.18 9.10 6.19 3.79 </line>
<line>ASP CA 9.27 11.13 12.14 9.03 6.10 3.81 </line>
<line>ILE CA 6.11 8.14 8.81 6.13 3.81 </line>
<line>ARG CA 5.28 5.43 6.40 3.79 </line>
<line>ALA CA 6.56 5.39 3.80 </line>
<line>LYS CA 6.20 3.81 </line>
<line>VAL CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 255</line>
<line>LYS CA 230</line>
<line>ILE CA 296</line>
<line>PRO CA 266</line>
<line>ASP CA 245</line>
<line>ILE CA 302</line>
<line>ARG CA 244</line>
<line>ALA CA 208</line>
<line>LYS CA 221</line>
<line>VAL CA 265</line>
<line>ASP CA 349</line>
</n14>
</entryChain>
<parallel>
<x>-69.16899871826172</x>
<y>29.141000747680664</y>
<z>-64.66799926757812</z>
</parallel>
<rotation>
<x>0.5339999794960022</x>
<y>-0.49399998784065247</y>
<z>0.6859999895095825</z>
<x>0.03400000184774399</x>
<y>0.8230000138282776</y>
<z>0.5659999847412109</z>
<x>-0.8450000286102295</x>
<y>-0.27900001406669617</y>
<z>0.4560000002384186</z>
</rotation>
<rmsd>2.880695104598999</rmsd>
<dmax>4.964244842529297</dmax>
</indel>