NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVD
confEVID 1I5EB-1XTVD
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB D
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVI-AGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHGGG EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1XTVD</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5528 CA VAL D 54 91.441 4.955 77.694 1.00 29.34 C </line>
<line>ATOM 5535 CA GLU D 55 93.824 1.997 77.978 1.00 34.87 C </line>
<line>ATOM 5544 CA THR D 56 92.566 -1.209 79.569 1.00 32.18 C </line>
<line>ATOM 5551 CA PRO D 57 94.571 -3.749 81.638 1.00 32.89 C </line>
<line>ATOM 5558 CA LEU D 58 94.774 -5.918 78.524 1.00 22.98 C </line>
<line>ATOM 5566 CA GLY D 59 97.172 -3.375 77.028 1.00 21.20 C </line>
<line>ATOM 5570 CA VAL D 60 94.801 -2.086 74.382 1.00 26.16 C </line>
<line>ATOM 5577 CA LYS D 61 93.446 1.436 73.869 1.00 32.55 C </line>
<line>ATOM 5586 CA THR D 62 89.717 1.950 73.376 1.00 26.33 C </line>
<line>ATOM 5593 CA LYS D 63 87.306 4.868 73.048 1.00 28.93 C </line>
<line>ATOM 5602 CA GLY D 64 84.923 5.897 75.772 1.00 25.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.86 6.22 5.54 5.57 8.48 10.13 11.40 10.06 6.54 3.81 </line>
<line>GLU CA 9.97 8.66 6.17 4.16 5.53 6.40 7.99 6.85 3.79 </line>
<line>THR CA 11.11 10.35 7.51 6.35 5.72 5.69 5.30 3.84 </line>
<line>PRO CA 14.85 14.17 11.15 9.41 7.45 5.31 3.80 </line>
<line>LEU CA 15.63 14.22 10.68 8.80 5.64 3.80 </line>
<line>GLY CA 15.41 13.46 9.86 6.86 3.78 </line>
<line>VAL CA 12.78 10.31 6.57 3.81 </line>
<line>LYS CA 9.81 7.08 3.80 </line>
<line>THR CA 6.66 3.80 </line>
<line>LYS CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 127</line>
<line>GLU CA 106</line>
<line>THR CA 93</line>
<line>PRO CA 70</line>
<line>LEU CA 68</line>
<line>GLY CA 77</line>
<line>VAL CA 88</line>
<line>LYS CA 104</line>
<line>THR CA 117</line>
<line>LYS CA 128</line>
<line>GLY CA 138</line>
</n14>
</entryChain>
<parallel>
<x>-75.8270034790039</x>
<y>56.08300018310547</y>
<z>-20.604999542236328</z>
</parallel>
<rotation>
<x>0.6460000276565552</x>
<y>0.5429999828338623</y>
<z>0.5370000004768372</z>
<x>0.5619999766349792</x>
<y>-0.8140000104904175</y>
<z>0.1469999998807907</z>
<x>0.5170000195503235</x>
<y>0.2070000022649765</y>
<z>-0.8309999704360962</z>
</rotation>
<rmsd>0.6292700171470642</rmsd>
<dmax>0.9731990098953247</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>RAKVI-AGKKL</sequence>
<secondary-structure>EEEE - E</secondary-structure>
<atom-coordinate>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS LYS GLY ALA ILE VAL LYS ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 25.95 24.18 20.93 17.39 14.92 13.82 10.31 7.05 3.79 </line>
<line>ALA CA 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 9.65 6.97 3.79 </line>
<line>LYS CA 6.59 3.79 </line>
<line>LYS CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1XTVD</entryIDChain>
<sequence>KGVDITDLNNI</sequence>
<secondary-structure>EEEEEGGGG E</secondary-structure>
<atom-coordinate>
<line>ATOM 5593 CA LYS D 63 87.306 4.868 73.048 1.00 28.93 C </line>
<line>ATOM 5602 CA GLY D 64 84.923 5.897 75.772 1.00 25.85 C </line>
<line>ATOM 5606 CA VAL D 65 82.690 8.725 76.936 1.00 25.72 C </line>
<line>ATOM 5613 CA ASP D 66 83.535 11.419 79.465 1.00 28.18 C </line>
<line>ATOM 5621 CA ILE D 67 80.723 13.716 80.663 1.00 20.55 C </line>
<line>ATOM 5629 CA THR D 68 82.926 16.615 81.803 1.00 17.95 C </line>
<line>ATOM 5636 CA ASP D 69 79.820 18.691 82.523 1.00 23.49 C </line>
<line>ATOM 5644 CA LEU D 70 79.370 16.530 85.598 1.00 22.39 C </line>
<line>ATOM 5652 CA ASN D 71 81.775 18.865 87.408 1.00 28.57 C </line>
<line>ATOM 5660 CA ASN D 72 79.708 21.936 86.649 1.00 20.89 C </line>
<line>ATOM 5668 CA ILE D 73 76.350 21.349 88.271 1.00 14.45 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ASN ASN LEU ASP THR ILE ASP VAL GLY LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 24.97 23.11 20.80 18.88 18.35 15.29 13.40 9.92 7.16 3.76 </line>
<line>GLY CA 21.64 20.07 17.71 15.51 15.34 12.46 10.13 6.79 3.79 </line>
<line>VAL CA 18.11 16.67 14.61 12.12 11.78 9.27 6.53 3.79 </line>
<line>ASP CA 15.09 13.30 11.03 9.00 8.72 5.73 3.82 </line>
<line>ILE CA 11.63 10.22 8.55 5.84 5.39 3.82 </line>
<line>THR CA 10.37 7.88 6.15 5.20 3.80 </line>
<line>ASP CA 7.22 5.25 5.26 3.79 </line>
<line>LEU CA 6.28 5.52 3.81 </line>
<line>ASN CA 6.03 3.78 </line>
<line>ASN CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LYS CA 128</line>
<line>GLY CA 138</line>
<line>VAL CA 165</line>
<line>ASP CA 186</line>
<line>ILE CA 250</line>
<line>THR CA 244</line>
<line>ASP CA 325</line>
<line>LEU CA 329</line>
<line>ASN CA 293</line>
<line>ASN CA 345</line>
<line>ILE CA 418</line>
</n14>
</entryChain>
<parallel>
<x>-65.55599975585938</x>
<y>27.85700035095215</y>
<z>-29.069000244140625</z>
</parallel>
<rotation>
<x>0.4830000102519989</x>
<y>0.08900000154972076</y>
<z>0.8709999918937683</z>
<x>-0.057999998331069946</x>
<y>-0.9890000224113464</y>
<z>0.13300000131130219</z>
<x>0.8740000128746033</x>
<y>-0.11500000208616257</y>
<z>-0.4729999899864197</z>
</rotation>
<rmsd>1.909034013748169</rmsd>
<dmax>2.9993250370025635</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1XTVD</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 6064 CA LYS D 124 69.284 33.202 99.383 1.00 26.90 C </line>
<line>ATOM 6073 CA LYS D 125 72.550 31.291 99.635 1.00 30.76 C </line>
<line>ATOM 6082 CA ILE D 126 73.733 30.165 96.219 1.00 26.83 C </line>
<line>ATOM 6090 CA PRO D 127 77.233 29.028 95.150 1.00 27.93 C </line>
<line>ATOM 6097 CA ASP D 128 79.121 30.933 92.504 1.00 28.83 C </line>
<line>ATOM 6105 CA ILE D 129 77.283 30.129 89.308 1.00 23.52 C </line>
<line>ATOM 6113 CA ARG D 130 79.945 30.305 86.556 1.00 36.13 C </line>
<line>ATOM 6124 CA ALA D 131 78.525 32.000 83.459 1.00 33.56 C </line>
<line>ATOM 6129 CA LYS D 132 78.081 29.811 80.417 1.00 31.44 C </line>
<line>ATOM 6138 CA VAL D 133 79.645 26.935 82.351 1.00 25.11 C </line>
<line>ATOM 6145 CA ASP D 134 77.468 25.775 85.218 1.00 18.64 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 17.97 20.90 21.18 18.45 16.93 13.23 12.22 9.93 6.25 3.79 </line>
<line>LYS CA 16.20 19.18 20.05 17.26 15.06 11.42 9.70 6.87 3.79 </line>
<line>ILE CA 12.42 15.42 16.39 13.75 11.49 7.77 6.59 3.83 </line>
<line>PRO CA 10.45 13.19 14.78 12.13 9.10 5.95 3.77 </line>
<line>ASP CA 9.08 10.92 12.18 9.13 6.04 3.77 </line>
<line>ILE CA 5.98 8.01 8.93 6.27 3.83 </line>
<line>ARG CA 5.33 5.40 6.43 3.81 </line>
<line>ALA CA 6.55 5.30 3.77 </line>
<line>LYS CA 6.30 3.80 </line>
<line>VAL CA 3.78 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 262</line>
<line>LYS CA 230</line>
<line>ILE CA 299</line>
<line>PRO CA 266</line>
<line>ASP CA 245</line>
<line>ILE CA 300</line>
<line>ARG CA 240</line>
<line>ALA CA 209</line>
<line>LYS CA 225</line>
<line>VAL CA 265</line>
<line>ASP CA 350</line>
</n14>
</entryChain>
<parallel>
<x>-47.43600082397461</x>
<y>-7.704999923706055</y>
<z>-54.74100112915039</z>
</parallel>
<rotation>
<x>0.6980000138282776</x>
<y>0.5080000162124634</y>
<z>0.5049999952316284</z>
<x>0.5659999847412109</x>
<y>-0.8230000138282776</y>
<z>0.04600000008940697</z>
<x>0.4390000104904175</x>
<y>0.2540000081062317</y>
<z>-0.8619999885559082</z>
</rotation>
<rmsd>2.781151056289673</rmsd>
<dmax>4.80869197845459</dmax>
</indel>