NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVE
confEVID 1I5EB-1XTVE
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB E
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHHHH EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1XTVE</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 7224 CA VAL E 54 62.979 54.100 28.969 1.00 45.00 C </line>
<line>ATOM 7231 CA GLU E 55 63.548 57.584 30.307 1.00 46.59 C </line>
<line>ATOM 7240 CA THR E 56 66.704 58.134 32.352 1.00 50.00 C </line>
<line>ATOM 7247 CA PRO E 57 66.792 60.462 35.399 1.00 52.17 C </line>
<line>ATOM 7254 CA LEU E 58 68.209 63.118 33.114 1.00 51.86 C </line>
<line>ATOM 7262 CA GLY E 59 64.950 63.323 31.137 1.00 49.52 C </line>
<line>ATOM 7266 CA VAL E 60 66.729 61.779 28.120 1.00 46.54 C </line>
<line>ATOM 7273 CA LYS E 61 64.880 58.865 26.466 1.00 46.43 C </line>
<line>ATOM 7282 CA THR E 62 67.053 55.884 25.532 1.00 55.64 C </line>
<line>ATOM 7289 CA LYS E 63 66.809 52.469 23.863 1.00 58.17 C </line>
<line>ATOM 7298 CA GLY E 64 67.247 49.352 25.981 1.00 45.34 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.05 6.59 5.62 5.71 8.59 9.68 11.22 9.82 6.45 3.78 </line>
<line>GLU CA 10.01 8.85 6.16 4.26 5.70 5.97 7.76 6.69 3.80 </line>
<line>THR CA 10.86 10.21 7.19 6.21 5.59 5.61 5.26 3.84 </line>
<line>PRO CA 14.57 14.03 10.88 9.27 7.40 5.45 3.78 </line>
<line>LEU CA 15.53 14.18 10.54 8.57 5.38 3.82 </line>
<line>GLY CA 15.07 13.20 9.55 6.46 3.83 </line>
<line>VAL CA 12.62 10.24 6.45 3.83 </line>
<line>LYS CA 9.82 7.17 3.81 </line>
<line>THR CA 6.55 3.81 </line>
<line>LYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 125</line>
<line>GLU CA 106</line>
<line>THR CA 94</line>
<line>PRO CA 71</line>
<line>LEU CA 69</line>
<line>GLY CA 76</line>
<line>VAL CA 86</line>
<line>LYS CA 102</line>
<line>THR CA 115</line>
<line>LYS CA 129</line>
<line>GLY CA 140</line>
</n14>
</entryChain>
<parallel>
<x>-48.54600143432617</x>
<y>-2.9860000610351562</y>
<z>26.492000579833984</z>
</parallel>
<rotation>
<x>-0.9160000085830688</x>
<y>0.1979999989271164</y>
<z>-0.3499999940395355</z>
<x>-0.020999999716877937</x>
<y>0.8460000157356262</y>
<z>0.5329999923706055</z>
<x>0.4009999930858612</x>
<y>0.4950000047683716</y>
<z>-0.7699999809265137</z>
</rotation>
<rmsd>0.6268870234489441</rmsd>
<dmax>0.990962028503418</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
<line>ATOM 2175 CA GLY B 73 21.757 28.569 37.014 1.00 53.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 22.80 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 19.37 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 15.85 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 13.35 9.65 6.97 3.79 </line>
<line>LYS CA 10.17 6.59 3.79 </line>
<line>LYS CA 6.91 3.80 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
<line>GLY CA 417</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1XTVE</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEEGGGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 7298 CA GLY E 64 67.247 49.352 25.981 1.00 45.34 C </line>
<line>ATOM 7302 CA VAL E 65 66.284 45.670 25.970 1.00 33.67 C </line>
<line>ATOM 7309 CA ASP E 66 63.550 43.900 27.927 1.00 32.05 C </line>
<line>ATOM 7317 CA ILE E 67 63.828 40.098 28.233 1.00 29.29 C </line>
<line>ATOM 7325 CA THR E 68 60.119 39.458 28.709 1.00 36.84 C </line>
<line>ATOM 7332 CA ASP E 69 60.853 35.725 28.913 1.00 40.75 C </line>
<line>ATOM 7340 CA LEU E 70 62.477 36.078 32.373 1.00 29.41 C </line>
<line>ATOM 7348 CA ASN E 71 58.891 36.105 33.720 1.00 37.69 C </line>
<line>ATOM 7356 CA ASN E 72 57.975 32.802 32.115 1.00 32.49 C </line>
<line>ATOM 7364 CA ILE E 73 60.416 30.235 33.412 1.00 28.85 C </line>
<line>ATOM 7372 CA VAL E 74 59.643 26.896 35.052 1.00 22.39 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.38 21.62 19.94 17.47 15.49 15.34 12.50 10.12 6.87 3.81 </line>
<line>VAL CA 21.89 18.11 16.50 14.36 12.14 11.71 9.17 6.50 3.80 </line>
<line>ASP CA 18.85 15.05 13.11 10.77 9.06 8.66 5.67 3.82 </line>
<line>ILE CA 15.44 11.65 10.13 8.39 5.93 5.33 3.79 </line>
<line>THR CA 14.08 10.36 7.78 6.15 5.51 3.81 </line>
<line>ASP CA 10.82 7.11 5.20 5.21 3.84 </line>
<line>LEU CA 9.98 6.28 5.57 3.83 </line>
<line>ASN CA 9.34 6.07 3.78 </line>
<line>ASN CA 6.80 3.77 </line>
<line>ILE CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 140</line>
<line>VAL CA 166</line>
<line>ASP CA 191</line>
<line>ILE CA 255</line>
<line>THR CA 250</line>
<line>ASP CA 332</line>
<line>LEU CA 333</line>
<line>ASN CA 291</line>
<line>ASN CA 340</line>
<line>ILE CA 416</line>
<line>VAL CA 436</line>
</n14>
</entryChain>
<parallel>
<x>-44.4739990234375</x>
<y>-2.380000114440918</y>
<z>19.90999984741211</z>
</parallel>
<rotation>
<x>0.3400000035762787</x>
<y>0.9110000133514404</y>
<z>-0.23100000619888306</z>
<x>-0.3070000112056732</x>
<y>0.3400000035762787</y>
<z>0.8889999985694885</z>
<x>0.8889999985694885</x>
<y>-0.23100000619888306</y>
<z>0.3959999978542328</z>
</rotation>
<rmsd>1.713104009628296</rmsd>
<dmax>2.361888885498047</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1XTVE</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 7760 CA LYS E 124 55.329 14.785 40.786 1.00 31.02 C </line>
<line>ATOM 7769 CA LYS E 125 54.422 18.420 41.590 1.00 27.01 C </line>
<line>ATOM 7778 CA ILE E 126 54.745 20.828 38.683 1.00 34.50 C </line>
<line>ATOM 7786 CA PRO E 127 53.383 24.383 38.163 1.00 32.29 C </line>
<line>ATOM 7793 CA ASP E 128 50.945 25.006 35.318 1.00 37.36 C </line>
<line>ATOM 7801 CA ILE E 129 53.004 25.331 32.151 1.00 37.71 C </line>
<line>ATOM 7809 CA ARG E 130 51.679 28.044 29.834 1.00 41.56 C </line>
<line>ATOM 7820 CA ALA E 131 51.585 26.689 26.295 1.00 43.52 C </line>
<line>ATOM 7825 CA LYS E 132 53.737 28.659 23.830 1.00 45.41 C </line>
<line>ATOM 7834 CA VAL E 133 54.772 30.976 26.703 1.00 32.49 C </line>
<line>ATOM 7841 CA ASP E 134 56.856 29.302 29.428 1.00 24.97 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.50 21.47 21.97 19.12 17.58 13.83 12.39 10.14 6.43 3.83 </line>
<line>LYS CA 16.50 19.48 20.51 17.62 15.44 11.78 9.74 6.96 3.79 </line>
<line>ILE CA 12.72 15.70 16.82 14.06 11.82 8.12 6.57 3.84 </line>
<line>PRO CA 10.61 13.29 14.96 12.22 9.26 6.10 3.80 </line>
<line>ASP CA 9.39 11.16 12.37 9.20 6.31 3.79 </line>
<line>ILE CA 6.17 8.04 8.99 6.18 3.81 </line>
<line>ARG CA 5.34 5.29 6.38 3.79 </line>
<line>ALA CA 6.67 5.36 3.82 </line>
<line>LYS CA 6.44 3.83 </line>
<line>VAL CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 240</line>
<line>LYS CA 217</line>
<line>ILE CA 291</line>
<line>PRO CA 262</line>
<line>ASP CA 242</line>
<line>ILE CA 294</line>
<line>ARG CA 239</line>
<line>ALA CA 213</line>
<line>LYS CA 224</line>
<line>VAL CA 269</line>
<line>ASP CA 354</line>
</n14>
</entryChain>
<parallel>
<x>-24.604999542236328</x>
<y>-0.2150000035762787</y>
<z>2.611999988555908</z>
</parallel>
<rotation>
<x>-0.9369999766349792</x>
<y>0.20999999344348907</y>
<z>-0.27900001406669617</z>
<x>0.020999999716877937</x>
<y>0.8320000171661377</y>
<z>0.5540000200271606</z>
<x>0.3490000069141388</x>
<y>0.5130000114440918</y>
<z>-0.7839999794960022</z>
</rotation>
<rmsd>2.9652390480041504</rmsd>
<dmax>5.0026679039001465</dmax>
</indel>