NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVF
confEVID 1I5EB-1XTVF
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB F
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEEEE EEEEEEEE EEEEEE GGHHHHHHHHHH EEEEEE EEE EEEEE HHHHHHHHHHGGG EEEEE EEEHHHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1XTVF</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 8920 CA VAL F 54 92.885 14.862 37.931 1.00 34.38 C </line>
<line>ATOM 8927 CA GLU F 55 91.761 11.352 38.837 1.00 40.14 C </line>
<line>ATOM 8936 CA THR F 56 88.019 10.749 38.936 1.00 37.77 C </line>
<line>ATOM 8943 CA PRO F 57 86.082 8.218 41.063 1.00 40.51 C </line>
<line>ATOM 8950 CA LEU F 58 85.952 5.754 38.179 1.00 40.56 C </line>
<line>ATOM 8958 CA GLY F 59 89.712 5.260 38.368 1.00 40.84 C </line>
<line>ATOM 8962 CA VAL F 60 90.240 7.095 35.093 1.00 40.96 C </line>
<line>ATOM 8969 CA LYS F 61 92.596 10.093 35.089 1.00 43.09 C </line>
<line>ATOM 8978 CA THR F 62 91.826 13.081 32.866 1.00 37.31 C </line>
<line>ATOM 8985 CA LYS F 63 92.876 16.639 32.059 1.00 36.74 C </line>
<line>ATOM 8994 CA GLY F 64 91.312 19.741 33.520 1.00 31.71 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.76 6.13 5.47 5.56 8.68 10.12 11.45 10.01 6.45 3.80 </line>
<line>GLU CA 9.94 8.67 6.22 4.04 5.87 6.44 8.09 6.86 3.79 </line>
<line>THR CA 11.00 10.28 7.54 6.01 5.75 5.77 5.46 3.83 </line>
<line>PRO CA 14.73 14.08 11.13 9.04 7.36 5.40 3.80 </line>
<line>LEU CA 15.69 14.28 10.79 8.52 5.45 3.80 </line>
<line>GLY CA 15.35 13.39 9.79 6.51 3.79 </line>
<line>VAL CA 12.79 10.36 6.58 3.81 </line>
<line>LYS CA 9.86 7.22 3.80 </line>
<line>THR CA 6.71 3.80 </line>
<line>LYS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 127</line>
<line>GLU CA 106</line>
<line>THR CA 96</line>
<line>PRO CA 74</line>
<line>LEU CA 71</line>
<line>GLY CA 78</line>
<line>VAL CA 86</line>
<line>LYS CA 103</line>
<line>THR CA 115</line>
<line>LYS CA 128</line>
<line>GLY CA 141</line>
</n14>
</entryChain>
<parallel>
<x>-72.60399627685547</x>
<y>45.604000091552734</y>
<z>19.274999618530273</z>
</parallel>
<rotation>
<x>0.5180000066757202</x>
<y>-0.4580000042915344</y>
<z>0.722000002861023</z>
<x>-0.004999999888241291</x>
<y>-0.8460000157356262</y>
<z>-0.5329999923706055</z>
<x>0.8550000190734863</x>
<y>0.27300000190734863</y>
<z>-0.4410000145435333</z>
</rotation>
<rmsd>0.5788009762763977</rmsd>
<dmax>0.9693809747695923</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
<line>ATOM 2175 CA GLY B 73 21.757 28.569 37.014 1.00 53.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 22.80 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 19.37 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 15.85 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 13.35 9.65 6.97 3.79 </line>
<line>LYS CA 10.17 6.59 3.79 </line>
<line>LYS CA 6.91 3.80 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
<line>GLY CA 417</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1XTVF</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 8994 CA GLY F 64 91.312 19.741 33.520 1.00 31.71 C </line>
<line>ATOM 8998 CA VAL F 65 91.816 23.415 34.249 1.00 38.49 C </line>
<line>ATOM 9005 CA ASP F 66 93.026 25.110 37.434 1.00 42.32 C </line>
<line>ATOM 9013 CA ILE F 67 92.713 28.897 37.456 1.00 32.25 C </line>
<line>ATOM 9021 CA THR F 68 95.142 29.519 40.290 1.00 37.73 C </line>
<line>ATOM 9028 CA ASP F 69 94.727 33.300 39.983 1.00 39.80 C </line>
<line>ATOM 9036 CA LEU F 70 91.370 32.854 41.727 1.00 32.01 C </line>
<line>ATOM 9044 CA ASN F 71 93.430 32.901 44.923 1.00 38.79 C </line>
<line>ATOM 9052 CA ASN F 72 95.319 36.076 44.124 1.00 29.55 C </line>
<line>ATOM 9060 CA ILE F 73 92.576 38.665 43.838 1.00 30.83 C </line>
<line>ATOM 9068 CA VAL F 74 92.043 42.013 45.545 1.00 26.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.32 21.59 19.88 17.54 15.47 15.40 12.49 10.06 6.86 3.78 </line>
<line>VAL CA 21.76 18.03 16.43 14.37 12.05 11.79 9.21 6.41 3.81 </line>
<line>ASP CA 18.77 15.00 13.05 10.81 9.01 8.74 5.66 3.80 </line>
<line>ILE CA 15.42 11.67 10.14 8.50 5.98 5.46 3.78 </line>
<line>THR CA 13.90 10.14 7.60 5.99 5.24 3.82 </line>
<line>ASP CA 10.68 6.95 5.02 5.12 3.81 </line>
<line>LEU CA 9.95 6.30 5.63 3.80 </line>
<line>ASN CA 9.24 5.93 3.78 </line>
<line>ASN CA 6.93 3.78 </line>
<line>ILE CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 141</line>
<line>VAL CA 168</line>
<line>ASP CA 190</line>
<line>ILE CA 255</line>
<line>THR CA 247</line>
<line>ASP CA 329</line>
<line>LEU CA 330</line>
<line>ASN CA 292</line>
<line>ASN CA 336</line>
<line>ILE CA 406</line>
<line>VAL CA 431</line>
</n14>
</entryChain>
<parallel>
<x>-74.94400024414062</x>
<y>9.48900032043457</y>
<z>10.072999954223633</z>
</parallel>
<rotation>
<x>-0.8149999976158142</x>
<y>-0.5580000281333923</y>
<z>-0.1550000011920929</z>
<x>0.3720000088214874</x>
<y>-0.29899999499320984</y>
<z>-0.8790000081062317</z>
<x>0.4440000057220459</x>
<y>-0.7739999890327454</y>
<z>0.45100000500679016</z>
</rotation>
<rmsd>1.704077959060669</rmsd>
<dmax>2.1654930114746094</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1XTVF</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 9456 CA LYS F 124 92.489 54.227 52.492 1.00 33.43 C </line>
<line>ATOM 9465 CA LYS F 125 92.504 50.646 53.715 1.00 29.75 C </line>
<line>ATOM 9474 CA ILE F 126 93.976 48.179 51.264 1.00 31.97 C </line>
<line>ATOM 9482 CA PRO F 127 95.207 44.568 51.651 1.00 31.97 C </line>
<line>ATOM 9489 CA ASP F 128 98.839 44.101 50.657 1.00 44.41 C </line>
<line>ATOM 9497 CA ILE F 129 99.056 43.892 46.855 1.00 41.48 C </line>
<line>ATOM 9505 CA ARG F 130 101.492 41.066 46.079 1.00 41.03 C </line>
<line>ATOM 9516 CA ALA F 131 103.799 42.284 43.322 1.00 42.29 C </line>
<line>ATOM 9521 CA LYS F 132 103.420 40.462 40.006 1.00 40.02 C </line>
<line>ATOM 9530 CA VAL F 133 101.041 37.967 41.630 1.00 32.88 C </line>
<line>ATOM 9537 CA ASP F 134 97.800 39.744 42.541 1.00 32.73 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.36 21.34 21.56 18.83 17.19 13.48 12.09 10.07 6.35 3.78 </line>
<line>LYS CA 16.49 19.49 20.27 17.48 15.19 11.64 9.61 6.96 3.78 </line>
<line>ILE CA 12.72 15.72 16.60 13.94 11.57 7.98 6.38 3.83 </line>
<line>PRO CA 10.63 13.34 14.83 12.18 9.10 6.19 3.79 </line>
<line>ASP CA 9.27 11.13 12.15 9.04 6.10 3.81 </line>
<line>ILE CA 6.12 8.15 8.82 6.13 3.81 </line>
<line>ARG CA 5.28 5.44 6.40 3.80 </line>
<line>ALA CA 6.56 5.39 3.80 </line>
<line>LYS CA 6.21 3.81 </line>
<line>VAL CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 257</line>
<line>LYS CA 230</line>
<line>ILE CA 296</line>
<line>PRO CA 266</line>
<line>ASP CA 245</line>
<line>ILE CA 302</line>
<line>ARG CA 244</line>
<line>ALA CA 208</line>
<line>LYS CA 221</line>
<line>VAL CA 265</line>
<line>ASP CA 349</line>
</n14>
</entryChain>
<parallel>
<x>-69.09200286865234</x>
<y>-22.55500030517578</y>
<z>-11.723999977111816</z>
</parallel>
<rotation>
<x>0.5370000004768372</x>
<y>-0.49300000071525574</y>
<z>0.6840000152587891</z>
<x>-0.03799999877810478</x>
<y>-0.8240000009536743</y>
<z>-0.5649999976158142</z>
<x>0.8429999947547913</x>
<y>0.27799999713897705</y>
<z>-0.460999995470047</z>
</rotation>
<rmsd>2.8817059993743896</rmsd>
<dmax>4.962887763977051</dmax>
</indel>