NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVG
confEVID 1I5EB-1XTVG
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB G
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVIA-GKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EE HHHHHHHHH HHHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHHH EEEEE EEEHHHHHHHHHH EEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>G</pdbChain>
<entryIDChain>1XTVG</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 10616 CA VAL G 54 44.364 34.338 57.038 1.00 40.72 C </line>
<line>ATOM 10623 CA GLU G 55 42.636 31.565 55.140 1.00 44.09 C </line>
<line>ATOM 10632 CA THR G 56 44.419 28.241 54.861 1.00 32.89 C </line>
<line>ATOM 10639 CA PRO G 57 44.009 26.229 51.644 1.00 38.81 C </line>
<line>ATOM 10646 CA LEU G 58 41.771 23.925 53.674 1.00 42.17 C </line>
<line>ATOM 10654 CA GLY G 59 39.194 26.698 53.819 1.00 39.28 C </line>
<line>ATOM 10658 CA VAL G 60 39.741 27.458 57.508 1.00 41.43 C </line>
<line>ATOM 10665 CA LYS G 61 40.387 30.805 59.200 1.00 38.00 C </line>
<line>ATOM 10674 CA THR G 62 42.952 31.081 61.971 1.00 34.93 C </line>
<line>ATOM 10681 CA LYS G 63 44.622 33.862 63.972 1.00 39.37 C </line>
<line>ATOM 10690 CA GLY G 64 48.023 35.073 62.890 1.00 24.60 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.94 6.96 6.08 5.74 8.30 9.77 11.25 9.75 6.47 3.78 </line>
<line>GLU CA 10.07 9.34 6.86 4.70 5.55 6.11 7.83 6.53 3.78 </line>
<line>THR CA 11.14 10.71 7.80 6.45 5.43 5.55 5.20 3.82 </line>
<line>PRO CA 14.86 14.51 11.46 9.55 7.36 5.30 3.80 </line>
<line>LEU CA 15.76 14.59 11.02 8.93 5.59 3.79 </line>
<line>GLY CA 15.18 13.56 9.99 6.87 3.81 </line>
<line>VAL CA 12.47 10.33 6.58 3.81 </line>
<line>LYS CA 9.49 7.07 3.79 </line>
<line>THR CA 6.52 3.81 </line>
<line>LYS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 128</line>
<line>GLU CA 106</line>
<line>THR CA 92</line>
<line>PRO CA 71</line>
<line>LEU CA 68</line>
<line>GLY CA 77</line>
<line>VAL CA 89</line>
<line>LYS CA 104</line>
<line>THR CA 116</line>
<line>LYS CA 127</line>
<line>GLY CA 141</line>
</n14>
</entryChain>
<parallel>
<x>-25.2189998626709</x>
<y>26.549999237060547</y>
<z>0.14499999582767487</z>
</parallel>
<rotation>
<x>-0.19200000166893005</x>
<y>-0.335999995470047</y>
<z>-0.921999990940094</z>
<x>0.6269999742507935</x>
<y>-0.7649999856948853</y>
<z>0.14900000393390656</z>
<x>-0.7549999952316284</x>
<y>-0.5490000247955322</y>
<z>0.3569999933242798</z>
</rotation>
<rmsd>0.7493900060653687</rmsd>
<dmax>1.0743440389633179</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>AKVIA-GKKLG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
<line>ATOM 2175 CA GLY B 73 21.757 28.569 37.014 1.00 53.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU LYS LYS GLY ALA ILE VAL LYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 26.33 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 22.80 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 19.37 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 15.85 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 15.67 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 13.35 9.65 6.97 3.79 </line>
<line>LYS CA 10.17 6.59 3.79 </line>
<line>LYS CA 6.91 3.80 </line>
<line>LEU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
<line>GLY CA 417</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>G</pdbChain>
<entryIDChain>1XTVG</entryIDChain>
<sequence>GVDITDLNNIV</sequence>
<secondary-structure>EEEEGGGG EE</secondary-structure>
<atom-coordinate>
<line>ATOM 10690 CA GLY G 64 48.023 35.073 62.890 1.00 24.60 C </line>
<line>ATOM 10694 CA VAL G 65 50.829 37.559 63.230 1.00 21.47 C </line>
<line>ATOM 10701 CA ASP G 66 51.681 40.240 60.696 1.00 23.56 C </line>
<line>ATOM 10709 CA ILE G 67 54.660 42.414 61.535 1.00 20.11 C </line>
<line>ATOM 10717 CA THR G 68 53.479 45.453 59.569 1.00 31.96 C </line>
<line>ATOM 10724 CA ASP G 69 56.637 47.443 60.293 1.00 29.07 C </line>
<line>ATOM 10732 CA LEU G 70 58.716 44.975 58.240 1.00 28.41 C </line>
<line>ATOM 10740 CA ASN G 71 57.554 47.159 55.334 1.00 33.88 C </line>
<line>ATOM 10748 CA ASN G 72 58.715 50.337 57.064 1.00 28.20 C </line>
<line>ATOM 10756 CA ILE G 73 62.398 49.964 57.764 1.00 19.27 C </line>
<line>ATOM 10764 CA VAL G 74 65.330 52.165 56.821 1.00 17.93 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASN ASN LEU ASP THR ILE ASP VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.07 21.32 19.53 17.15 15.30 15.30 12.19 9.99 6.70 3.76 </line>
<line>VAL CA 21.56 17.82 16.23 14.13 11.92 11.83 9.10 6.41 3.79 </line>
<line>ASP CA 18.53 14.77 12.83 10.54 8.83 8.75 5.63 3.78 </line>
<line>ILE CA 15.20 11.45 9.96 8.33 5.82 5.54 3.81 </line>
<line>THR CA 13.89 10.16 7.59 6.12 5.42 3.80 </line>
<line>ASP CA 10.48 6.78 4.81 5.05 3.82 </line>
<line>LEU CA 9.87 6.22 5.49 3.82 </line>
<line>ASN CA 9.37 6.10 3.80 </line>
<line>ASN CA 6.87 3.77 </line>
<line>ILE CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 141</line>
<line>VAL CA 168</line>
<line>ASP CA 193</line>
<line>ILE CA 257</line>
<line>THR CA 258</line>
<line>ASP CA 335</line>
<line>LEU CA 329</line>
<line>ASN CA 287</line>
<line>ASN CA 332</line>
<line>ILE CA 412</line>
<line>VAL CA 433</line>
</n14>
</entryChain>
<parallel>
<x>-36.1349983215332</x>
<y>-4.8480000495910645</y>
<z>-10.531999588012695</z>
</parallel>
<rotation>
<x>0.7540000081062317</x>
<y>0.08799999952316284</y>
<z>-0.6510000228881836</z>
<x>-0.27300000190734863</x>
<y>-0.8600000143051147</y>
<z>-0.4320000112056732</z>
<x>-0.5979999899864197</x>
<y>0.503000020980835</y>
<z>-0.6240000128746033</z>
</rotation>
<rmsd>1.7935940027236938</rmsd>
<dmax>2.453545093536377</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>G</pdbChain>
<entryIDChain>1XTVG</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 11152 CA LYS G 124 75.213 61.583 52.997 1.00 32.25 C </line>
<line>ATOM 11161 CA LYS G 125 72.413 60.060 50.960 1.00 31.94 C </line>
<line>ATOM 11170 CA ILE G 126 69.281 58.978 52.823 1.00 32.34 C </line>
<line>ATOM 11178 CA PRO G 127 65.719 57.864 51.934 1.00 30.73 C </line>
<line>ATOM 11185 CA ASP G 128 62.713 59.854 53.039 1.00 33.59 C </line>
<line>ATOM 11193 CA ILE G 129 62.090 58.822 56.630 1.00 27.16 C </line>
<line>ATOM 11201 CA ARG G 130 58.313 58.684 57.168 1.00 29.46 C </line>
<line>ATOM 11212 CA ALA G 131 57.605 60.264 60.553 1.00 27.68 C </line>
<line>ATOM 11217 CA LYS G 132 55.729 58.138 63.077 1.00 24.91 C </line>
<line>ATOM 11226 CA VAL G 133 55.885 55.202 60.686 1.00 29.35 C </line>
<line>ATOM 11233 CA ASP G 134 59.410 54.208 59.674 1.00 26.84 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 18.67 21.76 22.21 19.21 17.65 13.89 12.62 10.25 6.48 3.78 </line>
<line>LYS CA 16.71 19.78 20.71 17.64 15.47 11.84 9.92 7.11 3.80 </line>
<line>ILE CA 12.93 15.99 17.01 14.06 11.80 8.14 6.63 3.84 </line>
<line>PRO CA 10.63 13.43 14.97 12.08 9.11 6.01 3.77 </line>
<line>ASP CA 9.32 11.26 12.35 9.10 6.15 3.79 </line>
<line>ILE CA 6.14 8.25 9.08 6.13 3.82 </line>
<line>ARG CA 5.25 5.51 6.47 3.80 </line>
<line>ALA CA 6.38 5.35 3.80 </line>
<line>LYS CA 6.37 3.79 </line>
<line>VAL CA 3.80 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 250</line>
<line>LYS CA 218</line>
<line>ILE CA 281</line>
<line>PRO CA 260</line>
<line>ASP CA 242</line>
<line>ILE CA 298</line>
<line>ARG CA 237</line>
<line>ALA CA 212</line>
<line>LYS CA 222</line>
<line>VAL CA 263</line>
<line>ASP CA 344</line>
</n14>
</entryChain>
<parallel>
<x>-36.0</x>
<y>-36.29199981689453</y>
<z>-18.393999099731445</z>
</parallel>
<rotation>
<x>-0.2840000092983246</x>
<y>-0.2770000100135803</y>
<z>-0.9179999828338623</z>
<x>0.6240000128746033</x>
<y>-0.7799999713897705</y>
<z>0.041999999433755875</z>
<x>-0.7279999852180481</x>
<y>-0.5609999895095825</y>
<z>0.39500001072883606</z>
</rotation>
<rmsd>2.978605031967163</rmsd>
<dmax>4.93064022064209</dmax>
</indel>