NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1I5EB-1XTVH
confEVID 1I5EB-1XTVH
pdbIDA 1I5E
pdbIDB 1XTV
pdbChainA B
pdbChainB H
identity 0.348800003528595
indelSize 3
alignment <alignment>
<seq1>GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPV-SKARAKVI-AGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDP-------QTLKPVEYYVKLPS-DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK</seq1>
<seq2>-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--</seq2>
<ss_1> EE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEE -EEEEEEE - EEEE GGGG HHHH EEEEE ------- EEE - EEEEE HHHHHHHHHHH EEEE EE HHHHHHHHHH EEEEEE EEE EEE HHHHHH </ss_1>
<ss_2>- EEE HHHHHHHHHHH HHHHHHHHHHHHHHHHHHGGG EEEEEEE EEEEEEEEGGGG EEEEE GGHHHHHHHHHHH EEEEEEEE EEE EEE EEEEE HHHHHHHHHHGGG EEEEE EEEHHHHHHHH EEEEEEEEEEEE EEE HHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>IETPV-SKARA</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2042 CA ILE B 55 19.469 50.354 55.900 1.00 58.12 C </line>
<line>ATOM 2050 CA GLU B 56 19.500 54.099 56.401 1.00 56.80 C </line>
<line>ATOM 2059 CA THR B 57 17.734 56.442 53.948 1.00 51.48 C </line>
<line>ATOM 2066 CA PRO B 58 18.606 60.164 53.686 1.00 48.88 C </line>
<line>ATOM 2073 CA VAL B 59 15.688 60.784 56.049 1.00 50.36 C </line>
<line>ATOM 2080 CA SER B 60 15.965 58.051 58.697 1.00 54.29 C </line>
<line>ATOM 2086 CA LYS B 61 16.887 54.453 59.446 1.00 58.48 C </line>
<line>ATOM 2095 CA ALA B 62 14.678 51.692 58.067 1.00 60.32 C </line>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ALA LYS SER VAL PRO THR GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.67 6.32 5.43 6.00 8.91 11.10 10.09 6.62 3.78 </line>
<line>GLU CA 9.34 8.38 5.64 4.03 5.78 7.70 6.70 3.82 </line>
<line>THR CA 10.35 10.09 6.99 5.91 5.32 5.24 3.83 </line>
<line>PRO CA 14.16 13.72 10.31 8.29 6.05 3.81 </line>
<line>VAL CA 14.20 13.05 9.37 7.28 3.82 </line>
<line>SER CA 12.21 10.28 6.52 3.79 </line>
<line>LYS CA 9.61 7.23 3.80 </line>
<line>ALA CA 6.16 3.77 </line>
<line>ARG CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ILE CA 123</line>
<line>GLU CA 106</line>
<line>THR CA 91</line>
<line>PRO CA 69</line>
<line>VAL CA 70</line>
<line>SER CA 81</line>
<line>LYS CA 101</line>
<line>ALA CA 115</line>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1XTVH</entryIDChain>
<sequence>VETPLGVKTKG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 12312 CA VAL H 54 91.466 34.720 72.578 1.00 24.57 C </line>
<line>ATOM 12319 CA GLU H 55 93.829 37.684 72.297 1.00 31.92 C </line>
<line>ATOM 12328 CA THR H 56 92.573 40.889 70.714 1.00 30.97 C </line>
<line>ATOM 12335 CA PRO H 57 94.566 43.437 68.648 1.00 28.18 C </line>
<line>ATOM 12342 CA LEU H 58 94.777 45.595 71.762 1.00 25.56 C </line>
<line>ATOM 12350 CA GLY H 59 97.178 43.058 73.252 1.00 29.06 C </line>
<line>ATOM 12354 CA VAL H 60 94.824 41.758 75.896 1.00 24.54 C </line>
<line>ATOM 12361 CA LYS H 61 93.475 38.235 76.407 1.00 29.77 C </line>
<line>ATOM 12370 CA THR H 62 89.750 37.710 76.919 1.00 30.70 C </line>
<line>ATOM 12377 CA LYS H 63 87.334 34.800 77.248 1.00 28.35 C </line>
<line>ATOM 12386 CA GLY H 64 84.935 33.781 74.535 1.00 23.69 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS THR LYS VAL GLY LEU PRO THR GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.88 6.24 5.54 5.57 8.47 10.13 11.40 10.05 6.54 3.80 </line>
<line>GLU CA 9.97 8.66 6.16 4.16 5.53 6.40 7.99 6.85 3.79 </line>
<line>THR CA 11.11 10.35 7.52 6.35 5.72 5.69 5.30 3.84 </line>
<line>PRO CA 14.85 14.17 11.15 9.40 7.44 5.31 3.79 </line>
<line>LEU CA 15.62 14.21 10.68 8.80 5.64 3.80 </line>
<line>GLY CA 15.41 13.46 9.86 6.85 3.77 </line>
<line>VAL CA 12.78 10.31 6.57 3.81 </line>
<line>LYS CA 9.81 7.09 3.80 </line>
<line>THR CA 6.66 3.80 </line>
<line>LYS CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 127</line>
<line>GLU CA 106</line>
<line>THR CA 93</line>
<line>PRO CA 70</line>
<line>LEU CA 68</line>
<line>GLY CA 77</line>
<line>VAL CA 88</line>
<line>LYS CA 104</line>
<line>THR CA 117</line>
<line>LYS CA 128</line>
<line>GLY CA 138</line>
</n14>
</entryChain>
<parallel>
<x>-75.84200286865234</x>
<y>15.75100040435791</y>
<z>-16.628000259399414</z>
</parallel>
<rotation>
<x>0.6439999938011169</x>
<y>0.5410000085830688</y>
<z>0.5410000085830688</z>
<x>-0.5600000023841858</x>
<y>0.8149999976158142</y>
<z>-0.14800000190734863</z>
<x>-0.5210000276565552</x>
<y>-0.2070000022649765</y>
<z>0.828000009059906</z>
</rotation>
<rmsd>0.628790020942688</rmsd>
<dmax>0.9729139804840088</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>RAKVI-AGKKL</sequence>
<secondary-structure>EEEE - E</secondary-structure>
<atom-coordinate>
<line>ATOM 2100 CA ARG B 63 13.995 47.986 57.992 1.00 60.18 C </line>
<line>ATOM 2111 CA ALA B 64 14.047 46.778 54.404 1.00 58.09 C </line>
<line>ATOM 2116 CA LYS B 65 14.296 43.423 52.621 1.00 58.00 C </line>
<line>ATOM 2125 CA VAL B 66 16.729 41.928 50.108 1.00 59.51 C </line>
<line>ATOM 2132 CA ILE B 67 16.813 38.693 48.159 1.00 63.07 C </line>
<line>ATOM 2140 CA ALA B 68 17.719 35.717 50.363 1.00 66.96 C </line>
<line>ATOM 2145 CA GLY B 69 21.011 35.119 48.622 1.00 69.45 C </line>
<line>ATOM 2149 CA LYS B 70 21.083 31.923 46.590 1.00 68.20 C </line>
<line>ATOM 2158 CA LYS B 71 22.881 30.846 43.437 1.00 65.75 C </line>
<line>ATOM 2167 CA LEU B 72 20.989 30.473 40.165 1.00 60.84 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS LYS GLY ALA ILE VAL LYS ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 25.95 24.18 20.93 17.39 14.92 13.82 10.31 7.05 3.79 </line>
<line>ALA CA 22.73 21.26 18.20 14.76 12.34 10.58 7.01 3.81 </line>
<line>LYS CA 19.17 17.78 14.65 11.40 8.73 6.97 3.80 </line>
<line>VAL CA 15.76 14.32 11.46 8.18 6.29 3.78 </line>
<line>ILE CA 12.20 10.99 8.16 5.53 3.81 </line>
<line>ALA CA 11.92 9.92 6.32 3.77 </line>
<line>GLY CA 9.65 6.97 3.79 </line>
<line>LYS CA 6.59 3.79 </line>
<line>LYS CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 129</line>
<line>ALA CA 139</line>
<line>LYS CA 139</line>
<line>VAL CA 155</line>
<line>ILE CA 190</line>
<line>ALA CA 166</line>
<line>GLY CA 189</line>
<line>LYS CA 236</line>
<line>LYS CA 279</line>
<line>LEU CA 363</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1XTVH</entryIDChain>
<sequence>KGVDITDLNNI</sequence>
<secondary-structure>EEEEEGGGG E</secondary-structure>
<atom-coordinate>
<line>ATOM 12377 CA LYS H 63 87.334 34.800 77.248 1.00 28.35 C </line>
<line>ATOM 12386 CA GLY H 64 84.935 33.781 74.535 1.00 23.69 C </line>
<line>ATOM 12390 CA VAL H 65 82.707 30.951 73.373 1.00 21.01 C </line>
<line>ATOM 12397 CA ASP H 66 83.535 28.260 70.829 1.00 27.21 C </line>
<line>ATOM 12405 CA ILE H 67 80.729 25.968 69.640 1.00 25.67 C </line>
<line>ATOM 12413 CA THR H 68 82.928 23.065 68.483 1.00 22.19 C </line>
<line>ATOM 12420 CA ASP H 69 79.810 20.992 67.774 1.00 19.08 C </line>
<line>ATOM 12428 CA LEU H 70 79.352 23.160 64.715 1.00 24.22 C </line>
<line>ATOM 12436 CA ASN H 71 81.751 20.831 62.879 1.00 27.26 C </line>
<line>ATOM 12444 CA ASN H 72 79.683 17.762 63.643 1.00 16.79 C </line>
<line>ATOM 12452 CA ILE H 73 76.318 18.344 62.039 1.00 9.71 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ASN ASN LEU ASP THR ILE ASP VAL GLY LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 24.97 23.11 20.80 18.88 18.36 15.30 13.40 9.92 7.16 3.76 </line>
<line>GLY CA 21.65 20.07 17.71 15.51 15.35 12.47 10.13 6.80 3.78 </line>
<line>VAL CA 18.12 16.67 14.61 12.12 11.79 9.28 6.53 3.79 </line>
<line>ASP CA 15.09 13.29 11.03 8.99 8.72 5.73 3.81 </line>
<line>ILE CA 11.63 10.22 8.55 5.83 5.39 3.82 </line>
<line>THR CA 10.37 7.88 6.15 5.20 3.81 </line>
<line>ASP CA 7.22 5.25 5.27 3.78 </line>
<line>LEU CA 6.29 5.51 3.81 </line>
<line>ASN CA 6.03 3.78 </line>
<line>ASN CA 3.77 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LYS CA 128</line>
<line>GLY CA 138</line>
<line>VAL CA 164</line>
<line>ASP CA 187</line>
<line>ILE CA 250</line>
<line>THR CA 243</line>
<line>ASP CA 325</line>
<line>LEU CA 330</line>
<line>ASN CA 293</line>
<line>ASN CA 344</line>
<line>ILE CA 419</line>
</n14>
</entryChain>
<parallel>
<x>-65.55799865722656</x>
<y>12.852999687194824</y>
<z>-19.017000198364258</z>
</parallel>
<rotation>
<x>0.48100000619888306</x>
<y>0.09000000357627869</y>
<z>0.871999979019165</z>
<x>0.05900000035762787</x>
<y>0.9890000224113464</y>
<z>-0.13500000536441803</z>
<x>-0.875</x>
<y>0.11599999666213989</y>
<z>0.4699999988079071</z>
</rotation>
<rmsd>1.909561038017273</rmsd>
<dmax>3.0033230781555176</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1I5E</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1I5EB</entryIDChain>
<sequence>VKLPS-DVEER</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2502 CA VAL B 116 27.935 19.318 28.949 1.00 41.05 C </line>
<line>ATOM 2509 CA LYS B 117 29.456 22.469 30.407 1.00 46.16 C </line>
<line>ATOM 2518 CA LEU B 118 28.299 23.743 33.768 1.00 48.95 C </line>
<line>ATOM 2526 CA PRO B 119 29.469 26.213 36.425 1.00 56.82 C </line>
<line>ATOM 2533 CA SER B 120 31.642 24.467 39.061 1.00 61.10 C </line>
<line>ATOM 2539 CA ASP B 121 29.373 25.217 42.058 1.00 63.17 C </line>
<line>ATOM 2547 CA VAL B 122 26.837 22.670 40.705 1.00 64.32 C </line>
<line>ATOM 2554 CA GLU B 123 25.977 20.994 44.024 1.00 69.53 C </line>
<line>ATOM 2563 CA GLU B 124 25.008 24.379 45.449 1.00 69.58 C </line>
<line>ATOM 2572 CA ARG B 125 22.825 26.258 42.957 1.00 66.20 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU GLU VAL ASP SER PRO LEU LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.45 17.51 15.29 12.27 14.45 11.94 10.29 6.55 3.79 </line>
<line>LYS CA 14.69 15.80 14.13 10.63 11.97 9.15 7.09 3.78 </line>
<line>LEU CA 10.99 12.15 10.87 7.17 8.49 6.30 3.81 </line>
<line>PRO CA 9.32 10.23 9.86 6.15 5.72 3.84 </line>
<line>SER CA 9.80 9.21 8.29 5.39 3.83 </line>
<line>ASP CA 6.69 5.59 5.76 3.84 </line>
<line>VAL CA 5.83 5.36 3.82 </line>
<line>GLU CA 6.23 3.80 </line>
<line>GLU CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 285</line>
<line>LYS CA 273</line>
<line>LEU CA 314</line>
<line>PRO CA 262</line>
<line>SER CA 198</line>
<line>ASP CA 216</line>
<line>VAL CA 275</line>
<line>GLU CA 213</line>
<line>GLU CA 211</line>
<line>ARG CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTV</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1XTVH</entryIDChain>
<sequence>KKIPDIRAKVD</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 12848 CA LYS H 124 69.210 6.531 50.933 1.00 27.40 C </line>
<line>ATOM 12857 CA LYS H 125 72.474 8.423 50.669 1.00 28.65 C </line>
<line>ATOM 12866 CA ILE H 126 73.666 9.539 54.087 1.00 25.37 C </line>
<line>ATOM 12874 CA PRO H 127 77.177 10.682 55.132 1.00 27.74 C </line>
<line>ATOM 12881 CA ASP H 128 79.075 8.776 57.774 1.00 28.90 C </line>
<line>ATOM 12889 CA ILE H 129 77.258 9.564 60.978 1.00 23.83 C </line>
<line>ATOM 12897 CA ARG H 130 79.929 9.389 63.717 1.00 34.93 C </line>
<line>ATOM 12908 CA ALA H 131 78.504 7.688 66.810 1.00 26.25 C </line>
<line>ATOM 12913 CA LYS H 132 78.087 9.870 69.867 1.00 29.38 C </line>
<line>ATOM 12922 CA VAL H 133 79.647 12.750 67.933 1.00 28.61 C </line>
<line>ATOM 12929 CA ASP H 134 77.457 13.925 65.076 1.00 22.99 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL LYS ALA ARG ILE ASP PRO ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 17.96 20.90 21.18 18.43 16.93 13.22 12.21 9.92 6.23 3.78 </line>
<line>LYS CA 16.21 19.19 20.05 17.25 15.06 11.42 9.70 6.87 3.79 </line>
<line>ILE CA 12.42 15.42 16.39 13.74 11.49 7.77 6.59 3.84 </line>
<line>PRO CA 10.46 13.20 14.79 12.13 9.11 5.95 3.77 </line>
<line>ASP CA 9.08 10.92 12.18 9.12 6.04 3.77 </line>
<line>ILE CA 5.99 8.01 8.93 6.25 3.83 </line>
<line>ARG CA 5.34 5.40 6.44 3.81 </line>
<line>ALA CA 6.56 5.31 3.78 </line>
<line>LYS CA 6.31 3.80 </line>
<line>VAL CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 262</line>
<line>LYS CA 230</line>
<line>ILE CA 300</line>
<line>PRO CA 265</line>
<line>ASP CA 245</line>
<line>ILE CA 299</line>
<line>ARG CA 240</line>
<line>ALA CA 209</line>
<line>LYS CA 225</line>
<line>VAL CA 265</line>
<line>ASP CA 350</line>
</n14>
</entryChain>
<parallel>
<x>-47.391998291015625</x>
<y>14.27400016784668</y>
<z>-21.698999404907227</z>
</parallel>
<rotation>
<x>0.6959999799728394</x>
<y>0.5070000290870667</y>
<z>0.5090000033378601</z>
<x>-0.5659999847412109</x>
<y>0.8230000138282776</y>
<z>-0.04800000041723251</z>
<x>-0.4429999887943268</x>
<y>-0.2549999952316284</y>
<z>0.859000027179718</z>
</rotation>
<rmsd>2.778559923171997</rmsd>
<dmax>4.7978057861328125</dmax>
</indel>