NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JO8A-1OOTA
confEVID 1JO8A-1OOTA
pdbIDA 1JO8
pdbIDB 1OOT
pdbChainA A
pdbChainB A
identity 0.35589998960495
indelSize 2
alignment <alignment>
<seq1>-PWATAEYDYDAAEDNELTFVENDKII--NIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN</seq1>
<seq2>SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV-</seq2>
<ss_1>- EEE EEEE-- EEEEEEE EEEEEEE </ss_1>
<ss_2> EEE EEEE EEEEEEE-- EEEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1JO8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JO8A</entryIDChain>
<sequence>NDKII--NIEFV</sequence>
<secondary-structure> EEEE-- </secondary-structure>
<atom-coordinate>
<line>ATOM 183 CA ASN A 22 0.363 40.310 0.369 1.00 8.86 C </line>
<line>ATOM 194 CA ASP A 23 1.321 36.730 1.088 1.00 6.99 C </line>
<line>ATOM 202 CA LYS A 24 -1.655 34.535 1.943 1.00 5.68 C </line>
<line>ATOM 211 CA ILE A 25 -1.833 32.525 5.171 1.00 6.23 C </line>
<line>ATOM 220 CA ILE A 26 -4.270 29.616 4.977 1.00 6.25 C </line>
<line>ATOM 228 CA ASN A 27 -5.981 27.175 7.350 1.00 7.13 C </line>
<line>ATOM 239 CA ILE A 28 -5.862 29.639 10.189 1.00 6.09 C </line>
<line>ATOM 247 CA GLU A 29 -6.427 28.208 13.642 1.00 6.17 C </line>
<line>ATOM 259 CA PHE A 30 -7.373 30.668 16.367 1.00 5.48 C </line>
<line>ATOM 270 CA VAL A 31 -5.174 29.156 19.060 1.00 6.86 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PHE GLU ILE ASN ILE ILE LYS ASP ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 22.46 20.22 19.20 15.78 16.17 12.53 9.41 6.32 3.78 </line>
<line>ASP CA 20.56 18.60 17.04 13.59 13.56 9.85 6.66 3.80 </line>
<line>LYS CA 18.28 15.99 14.13 10.47 10.11 6.34 3.81 </line>
<line>ILE CA 14.68 12.63 10.56 7.05 7.11 3.80 </line>
<line>ILE CA 14.12 11.85 9.04 5.45 3.81 </line>
<line>ASN CA 11.90 9.77 6.39 3.76 </line>
<line>ILE CA 8.91 6.44 3.78 </line>
<line>GLU CA 5.64 3.79 </line>
<line>PHE CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 237</line>
<line>ASP CA 299</line>
<line>LYS CA 326</line>
<line>ILE CA 376</line>
<line>ILE CA 301</line>
<line>ASN CA 252</line>
<line>ILE CA 296</line>
<line>GLU CA 239</line>
<line>PHE CA 220</line>
<line>VAL CA 186</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>GDVITILKKSDS</sequence>
<secondary-structure> EEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 191 CA GLY A 23 19.441 3.865 9.027 1.00 13.79 C </line>
<line>ATOM 195 CA ASP A 24 18.906 4.947 5.437 1.00 12.03 C </line>
<line>ATOM 203 CA VAL A 25 21.369 3.603 2.900 1.00 10.90 C </line>
<line>ATOM 211 CA AILE A 26 22.604 6.435 0.683 0.50 11.05 C </line>
<line>ATOM 226 CA THR A 27 24.100 5.877 -2.773 1.00 11.02 C </line>
<line>ATOM 234 CA AILE A 28 27.296 7.965 -2.964 0.50 11.82 C </line>
<line>ATOM 249 CA LEU A 29 27.690 9.939 -6.177 1.00 14.24 C </line>
<line>ATOM 257 CA LYS A 30 30.764 11.959 -5.173 1.00 13.36 C </line>
<line>ATOM 266 CA LYS A 31 33.102 11.629 -2.265 1.00 15.36 C </line>
<line>ATOM 275 CA SER A 32 36.224 13.447 -1.131 1.00 14.67 C </line>
<line>ATOM 281 CA ASP A 33 39.287 12.345 0.823 1.00 17.32 C </line>
<line>ATOM 289 CA SER A 34 37.729 13.385 4.149 1.00 14.38 C </line>
</atom-coordinate>
<distance-map>
<line> SER ASP SER LYS LYS LEU ILE THR ILE VAL ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.19 23.09 21.83 19.35 19.88 18.33 14.91 12.85 9.29 6.43 3.79 </line>
<line>ASP CA 20.67 22.17 20.38 17.48 17.39 15.39 12.25 9.76 6.20 3.78 </line>
<line>VAL CA 19.10 20.04 18.27 15.12 14.94 12.75 9.41 6.69 3.80 </line>
<line>ILE CA 17.00 17.70 15.43 12.08 11.46 9.23 6.14 3.81 </line>
<line>THR CA 17.03 16.89 14.39 10.69 9.34 6.40 3.82 </line>
<line>ILE CA 13.74 13.32 10.64 6.90 5.73 3.79 </line>
<line>LEU CA 14.81 13.76 10.52 6.89 3.81 </line>
<line>LYS CA 11.72 10.43 6.95 3.75 </line>
<line>LYS CA 8.10 6.95 3.79 </line>
<line>SER CA 5.49 3.80 </line>
<line>ASP CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLY CA 209</line>
<line>ASP CA 270</line>
<line>VAL CA 293</line>
<line>ILE CA 347</line>
<line>THR CA 289</line>
<line>ILE CA 317</line>
<line>LEU CA 244</line>
<line>LYS CA 246</line>
<line>LYS CA 254</line>
<line>SER CA 192</line>
<line>ASP CA 140</line>
<line>SER CA 167</line>
</n14>
</entryChain>
<parallel>
<x>-28.85700035095215</x>
<y>24.621999740600586</y>
<z>4.752999782562256</z>
</parallel>
<rotation>
<x>-0.7409999966621399</x>
<y>0.01600000075995922</y>
<z>0.671999990940094</z>
<x>0.6100000143051147</x>
<y>-0.40299999713897705</y>
<z>0.6819999814033508</z>
<x>0.2809999883174896</x>
<y>0.9150000214576721</y>
<z>0.289000004529953</z>
</rotation>
<rmsd>2.504488945007324</rmsd>
<dmax>3.361546039581299</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>WTGRV--NGREG</sequence>
<secondary-structure>EEEEE-- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
<line>ATOM 384 CA VAL A 43 18.123 8.330 -1.442 1.00 10.45 C </line>
<line>ATOM 391 CA ASN A 44 14.332 8.377 -1.332 1.00 13.67 C </line>
<line>ATOM 399 CA GLY A 45 14.145 9.895 -4.799 1.00 11.79 C </line>
<line>ATOM 403 CA ARG A 46 16.115 12.989 -3.764 1.00 12.10 C </line>
<line>ATOM 414 CA GLU A 47 19.630 14.058 -4.665 1.00 12.05 C </line>
<line>ATOM 423 CA GLY A 48 21.940 16.436 -2.885 1.00 12.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU ARG GLY ASN VAL ARG GLY THR TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.36 10.94 14.01 16.74 16.42 13.02 10.23 6.63 3.80 </line>
<line>THR CA 5.59 7.58 10.95 13.62 13.92 10.60 7.27 3.77 </line>
<line>GLY CA 5.72 5.83 8.51 10.53 10.56 7.04 3.76 </line>
<line>ARG CA 6.41 4.32 5.55 6.87 7.04 3.77 </line>
<line>VAL CA 9.08 6.74 5.58 5.44 3.79 </line>
<line>ASN CA 11.19 8.45 5.51 3.79 </line>
<line>GLY CA 10.35 6.89 3.81 </line>
<line>ARG CA 6.83 3.78 </line>
<line>GLU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
<line>VAL CA 274</line>
<line>ASN CA 200</line>
<line>GLY CA 152</line>
<line>ARG CA 213</line>
<line>GLU CA 243</line>
<line>GLY CA 271</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JO8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JO8A</entryIDChain>
<sequence>WLGELEKDGSKG</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 318 CA TRP A 36 -2.702 32.435 15.410 1.00 5.47 C </line>
<line>ATOM 332 CA LEU A 37 -1.439 29.328 13.700 1.00 5.22 C </line>
<line>ATOM 343 CA GLY A 38 -1.471 29.077 9.918 1.00 5.89 C </line>
<line>ATOM 347 CA GLU A 39 0.143 27.777 6.768 1.00 5.49 C </line>
<line>ATOM 356 CA LEU A 40 1.726 29.838 4.022 1.00 5.91 C </line>
<line>ATOM 364 CA GLU A 41 0.036 29.491 0.675 1.00 6.22 C </line>
<line>ATOM 376 CA LYS A 42 3.359 29.963 -1.074 1.00 5.98 C </line>
<line>ATOM 385 CA ASP A 43 5.368 27.138 0.480 1.00 7.14 C </line>
<line>ATOM 393 CA GLY A 44 3.353 25.014 2.902 1.00 7.10 C </line>
<line>ATOM 397 CA SER A 45 5.335 26.168 5.973 1.00 6.15 C </line>
<line>ATOM 403 CA LYS A 46 3.325 26.322 9.202 1.00 6.62 C </line>
<line>ATOM 412 CA GLY A 47 3.704 28.290 12.385 1.00 6.52 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LYS SER GLY ASP LYS GLU LEU GLU GLY LEU TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.21 10.59 13.89 15.75 17.78 17.74 15.27 12.49 10.22 6.55 3.76 </line>
<line>LEU CA 5.41 7.21 10.75 12.58 15.03 15.55 13.11 10.20 7.28 3.79 </line>
<line>GLY CA 5.79 5.58 8.39 9.43 11.82 12.04 9.37 6.75 3.77 </line>
<line>GLU CA 6.67 4.26 5.49 5.73 8.20 8.75 6.33 3.78 </line>
<line>LEU CA 8.73 6.46 5.50 5.21 5.75 5.35 3.77 </line>
<line>GLU CA 12.33 9.67 8.20 6.00 5.83 3.78 </line>
<line>LYS CA 13.57 10.90 8.24 6.35 3.80 </line>
<line>ASP CA 12.08 9.00 5.58 3.80 </line>
<line>GLY CA 10.04 6.43 3.83 </line>
<line>SER CA 6.95 3.81 </line>
<line>LYS CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 316</line>
<line>LEU CA 325</line>
<line>GLY CA 363</line>
<line>GLU CA 315</line>
<line>LEU CA 310</line>
<line>GLU CA 241</line>
<line>LYS CA 194</line>
<line>ASP CA 153</line>
<line>GLY CA 173</line>
<line>SER CA 225</line>
<line>LYS CA 276</line>
<line>GLY CA 317</line>
</n14>
</entryChain>
<parallel>
<x>19.268999099731445</x>
<y>-17.170000076293945</y>
<z>-9.932999610900879</z>
</parallel>
<rotation>
<x>-0.7210000157356262</x>
<y>0.5989999771118164</y>
<z>0.3490000069141388</z>
<x>0.29100000858306885</x>
<y>-0.19499999284744263</y>
<z>0.9369999766349792</z>
<x>0.6290000081062317</x>
<y>0.7770000100135803</y>
<z>-0.03400000184774399</z>
</rotation>
<rmsd>0.8008430004119873</rmsd>
<dmax>1.5755120515823364</dmax>
</indel>