NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A4VA-1IOTA
confEVID 1A4VA-1IOTA
pdbIDA 1A4V
pdbIDB 1IOT
pdbChainA A
pdbChainB A
identity 0.359400004148483
indelSize 3
alignment <alignment>
<seq1>KQFTKCELSQLLKDI--DGYGGIALPELICTMFHTSGYDTQAIVENN-ESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILD-IKGIDYWLAHKALCTE-KLEQWLCEKL-</seq1>
<seq2>KVFGRCELAAALKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHHHGGG-- GGG HHHHHHHHHH EEE - EEEEE EE GGGG HHHHHHHHHHHH- GGG HHHHHH - GGGG -</ss_1>
<ss_2> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A4V</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1A4VA</entryIDChain>
<sequence>IVENN-ESTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 311 CA ILE A 41 14.507 18.161 15.153 1.00 13.49 C </line>
<line>ATOM 319 CA VAL A 42 15.707 20.836 12.697 1.00 16.13 C </line>
<line>ATOM 326 CA GLU A 43 18.142 23.486 13.829 1.00 28.09 C </line>
<line>ATOM 335 CA ASN A 44 19.747 26.684 12.422 1.00 36.89 C </line>
<line>ATOM 343 CA ASN A 45 20.795 30.044 13.873 1.00 38.24 C </line>
<line>ATOM 351 CA GLU A 46 18.358 31.570 16.291 1.00 34.26 C </line>
<line>ATOM 360 CA SER A 47 16.279 28.416 16.609 1.00 19.61 C </line>
<line>ATOM 366 CA THR A 48 15.187 24.825 16.511 1.00 5.58 C </line>
<line>ATOM 373 CA GLU A 49 11.903 23.352 15.300 1.00 5.10 C </line>
<line>ATOM 382 CA TYR A 50 10.364 20.302 16.921 1.00 4.37 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER GLU ASN ASN GLU VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.99 5.81 6.83 10.51 14.00 13.50 10.37 6.58 3.82 </line>
<line>VAL CA 6.83 5.25 5.54 8.55 11.63 10.59 7.11 3.77 </line>
<line>GLU CA 8.96 6.41 4.21 5.96 8.45 7.07 3.84 </line>
<line>ASN CA 12.21 9.00 6.40 5.71 6.39 3.81 </line>
<line>ASN CA 14.59 11.22 8.10 5.53 3.76 </line>
<line>GLU CA 13.83 10.50 7.46 3.79 </line>
<line>SER CA 10.05 6.82 3.75 </line>
<line>THR CA 6.62 3.80 </line>
<line>GLU CA 3.78 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 288</line>
<line>VAL CA 260</line>
<line>GLU CA 203</line>
<line>ASN CA 146</line>
<line>ASN CA 131</line>
<line>GLU CA 182</line>
<line>SER CA 245</line>
<line>THR CA 299</line>
<line>GLU CA 390</line>
<line>TYR CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 10.567 16.020 17.757 1.00 17.61 C </line>
<line>ATOM 340 CA ASN A 44 12.666 18.958 18.875 1.00 21.79 C </line>
<line>ATOM 348 CA ARG A 45 14.957 19.103 21.865 1.00 22.74 C </line>
<line>ATOM 359 CA ASN A 46 15.072 22.180 24.046 1.00 28.17 C </line>
<line>ATOM 367 CA THR A 47 17.952 23.861 25.865 1.00 32.18 C </line>
<line>ATOM 374 CA ASP A 48 16.595 22.893 29.273 1.00 25.42 C </line>
<line>ATOM 382 CA GLY A 49 16.972 19.252 28.213 1.00 22.61 C </line>
<line>ATOM 386 CA SER A 50 13.278 18.612 27.661 1.00 19.22 C </line>
<line>ATOM 392 CA THR A 51 11.882 17.623 24.228 1.00 17.83 C </line>
<line>ATOM 399 CA ASP A 52 8.739 18.552 22.236 1.00 16.87 C </line>
<line>ATOM 407 CA TYR A 53 6.739 15.734 20.639 1.00 17.02 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.80 5.46 6.80 10.59 12.68 14.70 13.48 9.89 6.76 3.78 </line>
<line>ASN CA 6.97 5.18 5.57 8.81 10.29 11.79 10.04 6.55 3.77 </line>
<line>ARG CA 8.97 6.25 4.15 6.05 6.66 8.48 6.90 3.77 </line>
<line>ASN CA 11.07 7.52 5.57 5.39 5.44 5.49 3.80 </line>
<line>THR CA 14.80 11.24 8.86 7.25 5.26 3.79 </line>
<line>ASP CA 14.93 11.41 8.69 5.65 3.81 </line>
<line>GLY CA 13.21 10.20 6.67 3.79 </line>
<line>SER CA 10.02 7.07 3.84 </line>
<line>THR CA 6.55 3.84 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 296</line>
<line>ASN CA 274</line>
<line>ARG CA 224</line>
<line>ASN CA 206</line>
<line>THR CA 141</line>
<line>ASP CA 157</line>
<line>GLY CA 189</line>
<line>SER CA 258</line>
<line>THR CA 317</line>
<line>ASP CA 403</line>
<line>TYR CA 431</line>
</n14>
</entryChain>
<parallel>
<x>3.171999931335449</x>
<y>6.052000045776367</y>
<z>-8.890999794006348</z>
</parallel>
<rotation>
<x>0.9589999914169312</x>
<y>0.12999999523162842</y>
<z>0.2529999911785126</z>
<x>0.18700000643730164</x>
<y>0.3840000033378601</y>
<z>-0.9039999842643738</z>
<x>-0.21400000154972076</x>
<y>0.9139999747276306</y>
<z>0.3440000116825104</z>
</rotation>
<rmsd>1.1870529651641846</rmsd>
<dmax>1.8704270124435425</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1A4V</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1A4VA</entryIDChain>
<sequence>KKILD-IKGID</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 723 CA LYS A 93 -4.603 24.351 16.191 1.00 4.37 C </line>
<line>ATOM 732 CA LYS A 94 -3.244 27.433 18.025 1.00 6.33 C </line>
<line>ATOM 741 CA ILE A 95 -0.883 28.211 15.173 1.00 6.74 C </line>
<line>ATOM 749 CA LEU A 96 -3.858 27.794 12.650 1.00 8.64 C </line>
<line>ATOM 757 CA ASP A 97 -5.963 30.164 14.812 1.00 12.51 C </line>
<line>ATOM 765 CA ILE A 98 -3.439 32.902 15.097 1.00 15.37 C </line>
<line>ATOM 773 CA LYS A 99 -1.071 32.816 12.086 1.00 10.43 C </line>
<line>ATOM 782 CA GLY A 100 -2.790 30.466 9.649 1.00 6.63 C </line>
<line>ATOM 786 CA ILE A 101 -1.684 27.586 7.432 1.00 9.32 C </line>
<line>ATOM 794 CA ASP A 102 1.173 29.729 6.051 1.00 13.94 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ILE GLY LYS ILE ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.85 9.78 9.14 10.05 8.70 6.13 4.99 5.46 3.84 </line>
<line>LYS CA 12.97 10.71 8.92 8.30 6.21 5.02 5.42 3.78 </line>
<line>ILE CA 9.47 7.81 6.26 5.55 5.34 5.45 3.92 </line>
<line>LEU CA 8.52 5.66 4.16 5.77 5.68 3.84 </line>
<line>ASP CA 11.31 8.91 6.07 6.20 3.73 </line>
<line>ILE CA 10.64 9.49 6.00 3.83 </line>
<line>LYS CA 7.14 7.03 3.80 </line>
<line>GLY CA 5.40 3.80 </line>
<line>ILE CA 3.83 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 354</line>
<line>LYS CA 304</line>
<line>ILE CA 353</line>
<line>LEU CA 320</line>
<line>ASP CA 225</line>
<line>ILE CA 208</line>
<line>LYS CA 232</line>
<line>GLY CA 265</line>
<line>ILE CA 342</line>
<line>ASP CA 274</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA LYS A 96 -7.198 19.838 25.607 1.00 21.88 C </line>
<line>ATOM 740 CA LYS A 97 -5.563 19.769 29.058 1.00 26.58 C </line>
<line>ATOM 749 CA ILE A 98 -2.802 22.185 28.013 1.00 21.11 C </line>
<line>ATOM 757 CA VAL A 99 -5.184 24.781 26.519 1.00 22.22 C </line>
<line>ATOM 764 CA SER A 100 -7.330 24.587 29.671 1.00 27.15 C </line>
<line>ATOM 770 CA ASP A 101 -4.290 25.337 31.850 1.00 38.20 C </line>
<line>ATOM 778 CA GLY A 102 -5.114 29.040 32.052 1.00 37.61 C </line>
<line>ATOM 782 CA ASN A 103 -2.780 30.520 29.424 1.00 31.41 C </line>
<line>ATOM 790 CA GLY A 104 -4.895 29.262 26.537 1.00 18.47 C </line>
<line>ATOM 794 CA MET A 105 -3.139 28.731 23.200 1.00 18.11 C </line>
<line>ATOM 802 CA ASN A 106 -0.263 31.047 24.287 1.00 19.65 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.25 10.07 9.75 12.17 11.43 8.81 6.25 5.41 5.53 3.82 </line>
<line>LYS CA 13.34 10.98 9.84 11.11 9.75 6.36 5.17 5.63 3.81 </line>
<line>ILE CA 9.94 8.13 7.53 8.45 8.29 5.18 5.39 3.83 </line>
<line>VAL CA 8.27 5.55 4.49 6.87 6.98 5.43 3.82 </line>
<line>SER CA 10.98 8.75 6.13 7.48 5.51 3.81 </line>
<line>ASP CA 10.30 9.36 6.63 5.92 3.80 </line>
<line>GLY CA 9.37 9.07 5.52 3.81 </line>
<line>ASN CA 5.74 6.49 3.79 </line>
<line>GLY CA 5.45 3.81 </line>
<line>MET CA 3.85 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 360</line>
<line>LYS CA 317</line>
<line>ILE CA 379</line>
<line>VAL CA 351</line>
<line>SER CA 249</line>
<line>ASP CA 234</line>
<line>GLY CA 181</line>
<line>ASN CA 207</line>
<line>GLY CA 281</line>
<line>MET CA 370</line>
<line>ASN CA 293</line>
</n14>
</entryChain>
<parallel>
<x>1.8769999742507935</x>
<y>4.269000053405762</y>
<z>-14.149999618530273</z>
</parallel>
<rotation>
<x>0.9990000128746033</x>
<y>0.04899999871850014</y>
<z>0.010999999940395355</z>
<x>-0.02500000037252903</x>
<y>0.6840000152587891</y>
<z>-0.7289999723434448</z>
<x>-0.0430000014603138</x>
<y>0.7279999852180481</y>
<z>0.6840000152587891</z>
</rotation>
<rmsd>1.3021210432052612</rmsd>
<dmax>2.2400600910186768</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1A4V</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1A4VA</entryIDChain>
<sequence>ALCTE-KLEQW</sequence>
<secondary-structure>HH - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 860 CA ALA A 109 4.517 25.351 -2.526 1.00 12.12 C </line>
<line>ATOM 865 CA LEU A 110 3.379 21.765 -3.009 1.00 12.98 C </line>
<line>ATOM 873 CA CYS A 111 0.012 21.295 -1.395 1.00 12.84 C </line>
<line>ATOM 879 CA THR A 112 -2.510 23.443 -3.357 1.00 17.11 C </line>
<line>ATOM 886 CA GLU A 113 -3.032 20.907 -6.197 1.00 20.80 C </line>
<line>ATOM 895 CA LYS A 114 -2.517 17.143 -6.879 1.00 19.07 C </line>
<line>ATOM 904 CA LEU A 115 -4.195 16.408 -3.591 1.00 19.77 C </line>
<line>ATOM 912 CA GLU A 116 -5.766 13.059 -4.600 1.00 20.74 C </line>
<line>ATOM 921 CA GLN A 117 -2.596 11.182 -3.723 1.00 18.05 C </line>
<line>ATOM 930 CA TRP A 118 -2.754 12.433 -0.086 1.00 15.48 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN GLU LEU LYS GLU THR CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.02 15.90 16.16 12.53 11.65 9.50 7.33 6.17 3.79 </line>
<line>LEU CA 11.54 12.17 12.73 9.30 8.43 7.21 6.13 3.76 </line>
<line>CYS CA 9.38 10.70 10.56 6.81 7.33 5.70 3.85 </line>
<line>THR CA 11.49 12.27 10.95 7.24 7.22 3.84 </line>
<line>GLU CA 10.45 10.04 8.46 5.33 3.86 </line>
<line>LYS CA 8.27 6.75 5.69 3.76 </line>
<line>LEU CA 5.49 5.47 3.83 </line>
<line>GLU CA 5.46 3.79 </line>
<line>GLN CA 3.85 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 233</line>
<line>CYS CA 275</line>
<line>THR CA 230</line>
<line>GLU CA 185</line>
<line>LYS CA 179</line>
<line>LEU CA 238</line>
<line>GLU CA 184</line>
<line>GLN CA 218</line>
<line>TRP CA 302</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 4.082 34.358 17.218 1.00 22.99 C </line>
<line>ATOM 874 CA ARG A 114 2.594 33.267 13.913 1.00 19.60 C </line>
<line>ATOM 885 CA CYS A 115 -1.114 32.571 14.243 1.00 17.44 C </line>
<line>ATOM 891 CA LYS A 116 -2.457 34.845 16.941 1.00 17.60 C </line>
<line>ATOM 900 CA GLY A 117 -4.248 37.877 15.510 1.00 25.15 C </line>
<line>ATOM 904 CA THR A 118 -4.037 36.570 11.942 1.00 23.93 C </line>
<line>ATOM 911 CA ASP A 119 -6.840 35.460 9.631 1.00 33.04 C </line>
<line>ATOM 919 CA VAL A 120 -6.733 31.850 10.864 1.00 26.40 C </line>
<line>ATOM 926 CA GLN A 121 -9.875 31.168 8.857 1.00 30.29 C </line>
<line>ATOM 935 CA ALA A 122 -7.650 30.881 5.786 1.00 24.07 C </line>
<line>ATOM 940 CA TRP A 123 -6.330 27.578 7.150 1.00 24.85 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.99 16.75 16.58 12.79 13.34 9.93 9.20 6.56 6.25 3.79 </line>
<line>ARG CA 12.56 13.29 13.62 9.91 10.59 7.67 8.40 6.10 3.79 </line>
<line>CYS CA 10.12 10.82 10.38 6.60 7.90 5.46 6.29 3.78 </line>
<line>LYS CA 12.79 12.93 11.57 8.01 8.55 5.52 3.80 </line>
<line>GLY CA 13.43 12.45 11.00 8.01 6.86 3.81 </line>
<line>THR CA 10.44 9.13 8.53 5.54 3.80 </line>
<line>ASP CA 8.28 6.03 5.31 3.82 </line>
<line>VAL CA 5.68 5.25 3.79 </line>
<line>GLN CA 5.33 3.80 </line>
<line>ALA CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 204</line>
<line>ARG CA 245</line>
<line>CYS CA 298</line>
<line>LYS CA 270</line>
<line>GLY CA 193</line>
<line>THR CA 211</line>
<line>ASP CA 193</line>
<line>VAL CA 292</line>
<line>GLN CA 252</line>
<line>ALA CA 218</line>
<line>TRP CA 314</line>
</n14>
</entryChain>
<parallel>
<x>1.809999942779541</x>
<y>-14.003000259399414</y>
<z>-17.340999603271484</z>
</parallel>
<rotation>
<x>0.9350000023841858</x>
<y>0.32600000500679016</y>
<z>0.13899999856948853</z>
<x>0.004000000189989805</x>
<y>0.3840000033378601</y>
<z>-0.9229999780654907</z>
<x>-0.35499998927116394</x>
<y>0.8640000224113464</y>
<z>0.3580000102519989</z>
</rotation>
<rmsd>1.1448149681091309</rmsd>
<dmax>2.132620096206665</dmax>
</indel>