NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1IBHA-1XTLB
confEVID 1IBHA-1XTLB
pdbIDA 1IBH
pdbIDB 1XTL
pdbChainA A
pdbChainB B
identity 0.298099994659424
indelSize 2
alignment <alignment>
<seq1>-QDLTVKMTDLQTGKPVGTIELSQNK-YGVVFIPELADLTP-GIHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKG--------HAIMIHAGGDNHSDMPKALGGGGARVACGVIQ-</seq1>
<seq2>AFGHHVQLVNRE-GKAVGFIEIKESDDEGLDIHISANSLRPGASLGFHIYEKGSCVR-------PDFESAGGHFNPLNK-EHGFNNPMGHHAGDLPNLEVGADGKVDVIMNAPDTSLKKGSKLNILDEDGSAFIIHEQADDYL--TNPSGNSGARIVCGALLG</seq2>
<ss_1>- EEEEEE EEEEEEEEE - EEEEEEEE -EEEEEEEE EEE EEE GGG EEE EEE GGG --------EEEEE GGG EEE -</ss_1>
<ss_2> EEEEE - EEEEEEE EEEEEEEE EEEEEEEE ------- - EEE EEEEEEE EEEEE -- EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1IBH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IBHA</entryIDChain>
<sequence>LSQNK-YGVVF</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 145 CA LEU A 21 20.299 41.386 27.561 1.00 21.14 C </line>
<line>ATOM 153 CA SER A 22 17.403 43.775 28.115 1.00 24.44 C </line>
<line>ATOM 159 CA GLN A 23 14.027 44.289 26.476 1.00 25.86 C </line>
<line>ATOM 168 CA ASN A 24 12.735 47.752 25.579 1.00 27.40 C </line>
<line>ATOM 176 CA LYS A 25 10.039 49.224 23.322 1.00 26.35 C </line>
<line>ATOM 185 CA TYR A 26 12.481 49.225 20.405 1.00 21.35 C </line>
<line>ATOM 197 CA GLY A 27 13.804 45.683 20.745 1.00 18.73 C </line>
<line>ATOM 201 CA VAL A 28 16.559 43.800 22.563 1.00 15.90 C </line>
<line>ATOM 208 CA VAL A 29 19.635 45.695 23.727 1.00 17.59 C </line>
<line>ATOM 215 CA PHE A 30 22.901 43.808 24.088 1.00 18.01 C </line>
</atom-coordinate>
<distance-map>
<line> PHE VAL VAL GLY TYR LYS ASN GLN SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 4.97 5.81 6.69 10.35 13.18 13.59 10.08 7.00 3.79 </line>
<line>SER CA 6.82 5.28 5.62 8.42 10.65 10.34 6.64 3.79 </line>
<line>GLN CA 9.20 6.40 4.69 5.90 7.98 7.09 3.80 </line>
<line>ASN CA 11.01 7.43 6.27 5.37 5.39 3.81 </line>
<line>LYS CA 13.98 10.23 8.52 5.78 3.80 </line>
<line>TYR CA 12.31 8.64 7.12 3.80 </line>
<line>GLY CA 9.87 6.55 3.80 </line>
<line>VAL CA 6.52 3.80 </line>
<line>VAL CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LEU CA 375</line>
<line>SER CA 284</line>
<line>GLN CA 242</line>
<line>ASN CA 191</line>
<line>LYS CA 137</line>
<line>TYR CA 189</line>
<line>GLY CA 272</line>
<line>VAL CA 348</line>
<line>VAL CA 343</line>
<line>PHE CA 412</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTL</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTLB</entryIDChain>
<sequence>IKESDDEGLDI</sequence>
<secondary-structure>EE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 158 CA ILE B 60 -5.243 7.350 7.580 1.00 28.22 C </line>
<line>ATOM 166 CA LYS B 61 -4.248 10.798 9.014 1.00 31.68 C </line>
<line>ATOM 175 CA GLU B 62 -3.936 13.987 6.953 1.00 39.83 C </line>
<line>ATOM 184 CA SER B 63 -0.373 14.352 8.015 1.00 43.43 C </line>
<line>ATOM 190 CA ASP B 64 1.392 17.136 9.560 1.00 15.00 C </line>
<line>ATOM 198 CA ASP B 65 3.861 17.186 7.968 1.00 15.00 C </line>
<line>ATOM 206 CA GLU B 66 3.324 16.244 5.183 1.00 46.08 C </line>
<line>ATOM 215 CA GLY B 67 1.370 13.826 2.953 1.00 38.15 C </line>
<line>ATOM 219 CA LEU B 68 -0.339 11.032 4.860 1.00 31.41 C </line>
<line>ATOM 227 CA ASP B 69 0.206 8.804 7.831 1.00 28.12 C </line>
<line>ATOM 235 CA ILE B 70 -0.845 5.265 7.407 1.00 24.51 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ASP LEU GLY GLU ASP ASP SER GLU LYS ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.87 5.65 6.71 10.35 12.58 13.41 11.99 8.54 6.79 3.86 </line>
<line>LYS CA 6.69 5.02 5.71 8.80 10.08 10.38 8.50 5.35 3.81 </line>
<line>GLU CA 9.26 6.69 5.10 6.65 7.81 8.49 6.72 3.74 </line>
<line>SER CA 9.12 5.58 4.58 5.38 5.03 5.10 3.64 </line>
<line>ASP CA 12.27 8.59 7.90 7.39 4.87 2.94 </line>
<line>ASP CA 12.83 9.15 8.07 6.53 2.99 </line>
<line>GLU CA 11.95 8.49 6.38 3.83 </line>
<line>GLY CA 9.90 7.10 3.79 </line>
<line>LEU CA 6.32 3.75 </line>
<line>ASP CA 3.72 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 366</line>
<line>LYS CA 292</line>
<line>GLU CA 269</line>
<line>SER CA 234</line>
<line>ASP CA 167</line>
<line>ASP CA 154</line>
<line>GLU CA 191</line>
<line>GLY CA 297</line>
<line>LEU CA 358</line>
<line>ASP CA 343</line>
<line>ILE CA 417</line>
</n14>
</entryChain>
<parallel>
<x>15.675000190734863</x>
<y>32.55099868774414</y>
<z>17.58099937438965</z>
</parallel>
<rotation>
<x>0.125</x>
<y>0.7760000228881836</y>
<z>-0.6179999709129333</z>
<x>-0.9900000095367432</x>
<y>0.14000000059604645</y>
<z>-0.024000000208616257</z>
<x>0.06700000166893005</x>
<y>0.6140000224113464</y>
<z>0.7860000133514404</z>
</rotation>
<rmsd>1.157647967338562</rmsd>
<dmax>2.061026096343994</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1IBH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IBHA</entryIDChain>
<sequence>ADLTP-GIHGF</sequence>
<secondary-structure> -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 258 CA ALA A 35 37.700 41.556 27.473 1.00 25.24 C </line>
<line>ATOM 263 CA ASP A 36 40.579 39.762 25.725 1.00 28.27 C </line>
<line>ATOM 271 CA LEU A 37 39.132 40.151 22.235 1.00 26.29 C </line>
<line>ATOM 279 CA THR A 38 41.040 41.113 19.093 1.00 27.08 C </line>
<line>ATOM 286 CA PRO A 39 40.617 44.872 18.412 1.00 26.74 C </line>
<line>ATOM 293 CA GLY A 40 38.269 45.689 15.550 1.00 23.86 C </line>
<line>ATOM 297 CA ILE A 41 34.759 44.874 14.312 1.00 24.82 C </line>
<line>ATOM 305 CA HIS A 42 33.327 41.391 15.015 1.00 21.28 C </line>
<line>ATOM 315 CA GLY A 43 30.446 39.365 13.622 1.00 19.36 C </line>
<line>ATOM 319 CA PHE A 44 27.807 39.109 16.340 1.00 16.80 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY HIS ILE GLY PRO THR LEU ASP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.09 15.79 13.20 13.89 12.63 10.08 9.03 5.61 3.82 </line>
<line>ASP CA 15.86 15.79 13.04 13.79 12.00 8.92 6.78 3.80 </line>
<line>LEU CA 12.81 12.26 9.35 10.21 8.72 6.25 3.80 </line>
<line>THR CA 13.66 12.05 8.73 8.74 6.42 3.84 </line>
<line>PRO CA 14.20 12.52 8.76 7.15 3.79 </line>
<line>GLY CA 12.38 10.24 6.57 3.81 </line>
<line>ILE CA 9.26 7.03 3.83 </line>
<line>HIS CA 6.12 3.79 </line>
<line>GLY CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ALA CA 278</line>
<line>ASP CA 262</line>
<line>LEU CA 328</line>
<line>THR CA 253</line>
<line>PRO CA 200</line>
<line>GLY CA 222</line>
<line>ILE CA 298</line>
<line>HIS CA 392</line>
<line>GLY CA 447</line>
<line>PHE CA 544</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1XTL</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1XTLB</entryIDChain>
<sequence>NSLRPGASLGF</sequence>
<secondary-structure> EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 272 CA ASN B 75 -1.979 -10.580 11.101 1.00 21.99 C </line>
<line>ATOM 280 CA SER B 76 -1.811 -14.064 9.317 1.00 23.91 C </line>
<line>ATOM 286 CA LEU B 77 1.453 -13.174 7.539 1.00 25.47 C </line>
<line>ATOM 294 CA ARG B 78 4.795 -14.994 7.058 1.00 29.29 C </line>
<line>ATOM 305 CA PRO B 79 6.523 -14.945 10.441 1.00 30.92 C </line>
<line>ATOM 312 CA GLY B 80 9.735 -12.914 10.319 1.00 27.86 C </line>
<line>ATOM 316 CA ALA B 81 9.308 -11.846 6.588 1.00 23.82 C </line>
<line>ATOM 321 CA SER B 82 10.169 -8.380 4.951 1.00 22.91 C </line>
<line>ATOM 327 CA LEU B 83 7.199 -7.786 2.627 1.00 19.27 C </line>
<line>ATOM 335 CA GLY B 84 6.650 -5.029 -0.032 1.00 20.57 C </line>
<line>ATOM 339 CA PHE B 85 3.825 -2.558 0.600 1.00 19.73 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY LEU SER ALA GLY PRO ARG LEU SER ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 14.43 15.14 12.80 13.79 12.22 11.97 9.58 9.04 5.59 3.92 </line>
<line>SER CA 15.50 15.51 12.86 13.96 11.66 11.65 8.46 7.04 3.82 </line>
<line>LEU CA 12.90 12.27 9.28 10.28 8.02 8.74 6.10 3.84 </line>
<line>ARG CA 14.05 12.37 8.80 8.78 5.52 6.27 3.80 </line>
<line>PRO CA 16.05 14.42 10.62 9.30 5.68 3.80 </line>
<line>GLY CA 15.38 13.37 9.59 7.04 3.90 </line>
<line>ALA CA 12.34 9.87 6.05 3.93 </line>
<line>SER CA 9.65 6.96 3.82 </line>
<line>LEU CA 6.54 3.87 </line>
<line>GLY CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ASN CA 305</line>
<line>SER CA 270</line>
<line>LEU CA 316</line>
<line>ARG CA 248</line>
<line>PRO CA 174</line>
<line>GLY CA 170</line>
<line>ALA CA 235</line>
<line>SER CA 294</line>
<line>LEU CA 372</line>
<line>GLY CA 438</line>
<line>PHE CA 517</line>
</n14>
</entryChain>
<parallel>
<x>33.72100067138672</x>
<y>54.39699935913086</y>
<z>12.27400016784668</z>
</parallel>
<rotation>
<x>0.0430000014603138</x>
<y>0.6069999933242798</y>
<z>-0.7929999828338623</z>
<x>-0.9639999866485596</x>
<y>0.2329999953508377</y>
<z>0.12600000202655792</z>
<x>0.26100000739097595</x>
<y>0.7599999904632568</y>
<z>0.5950000286102295</z>
</rotation>
<rmsd>0.7924680113792419</rmsd>
<dmax>1.7334100008010864</dmax>
</indel>