NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1IIZA-1IOTA
confEVID 1IIZA-1IOTA
pdbIDA 1IIZ
pdbIDB 1IOT
pdbChainA A
pdbChainB A
identity 0.359400004148483
indelSize 3
alignment <alignment>
<seq1>KRFTRCGLVNELRKQGF---DENLMRDWVCLVENESARYTDKIANVNKNGSRDYGLFQINDKYWCSKG--STPGKDCNVTCSQLLTDDITVASTCAKKIYKRT-KFDAWSGWDNHCNH-SNPD-ISSC--</seq1>
<seq2>KVFGRCELAAALKRHGLDNYRGYSLGNWVCAAKFESNFNTQATN-RNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHHHHH --- HHHHHHHHHH EEE EE EEE-- EEGGGGG HHHHHHHHHHHHHH- HHHHHH - - --</ss_1>
<ss_2> HHHHHHHHHH GGG HHHHHHHHHH EEE-EE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1IIZ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IIZA</entryIDChain>
<sequence>WCSKG--STPGK</sequence>
<secondary-structure> EEE-- </secondary-structure>
<atom-coordinate>
<line>ATOM 502 CA TRP A 61 15.201 19.286 35.980 1.00 11.02 C </line>
<line>ATOM 516 CA CYS A 62 17.209 16.255 34.976 1.00 5.00 C </line>
<line>ATOM 522 CA SER A 63 20.609 15.668 33.383 1.00 14.59 C </line>
<line>ATOM 528 CA LYS A 64 20.879 14.170 29.915 1.00 32.44 C </line>
<line>ATOM 537 CA GLY A 65 24.480 13.189 30.539 1.00 32.85 C </line>
<line>ATOM 541 CA SER A 66 25.142 10.279 32.943 1.00 18.10 C </line>
<line>ATOM 547 CA THR A 67 25.898 12.572 35.910 1.00 14.39 C </line>
<line>ATOM 554 CA PRO A 68 23.011 13.579 38.266 1.00 16.44 C </line>
<line>ATOM 561 CA GLY A 69 20.906 16.391 36.849 1.00 54.90 C </line>
<line>ATOM 565 CA LYS A 70 20.083 19.969 37.594 1.00 21.47 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLY PRO THR SER GLY LYS SER CYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 5.19 6.46 9.94 12.63 13.75 12.36 9.76 7.01 3.77 </line>
<line>CYS CA 5.38 4.15 7.19 9.48 10.14 9.05 6.59 3.80 </line>
<line>SER CA 6.04 3.55 5.83 6.63 7.06 5.41 3.79 </line>
<line>LYS CA 9.66 7.28 8.64 7.98 6.52 3.78 </line>
<line>GLY CA 10.73 7.93 7.88 5.59 3.83 </line>
<line>SER CA 11.88 8.40 6.62 3.83 </line>
<line>THR CA 9.56 6.36 3.86 </line>
<line>PRO CA 7.06 3.79 </line>
<line>GLY CA 3.75 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>TRP CA 362</line>
<line>CYS CA 346</line>
<line>SER CA 254</line>
<line>LYS CA 252</line>
<line>GLY CA 167</line>
<line>SER CA 139</line>
<line>THR CA 140</line>
<line>PRO CA 191</line>
<line>GLY CA 247</line>
<line>LYS CA 238</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>WCNDGRTPGSRN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 495 CA TRP A 63 2.994 16.847 29.885 1.00 19.70 C </line>
<line>ATOM 509 CA CYS A 64 4.428 13.442 29.003 1.00 20.91 C </line>
<line>ATOM 515 CA ASN A 65 7.112 11.081 30.258 1.00 21.39 C </line>
<line>ATOM 523 CA ASP A 66 10.063 10.358 27.988 1.00 19.82 C </line>
<line>ATOM 531 CA GLY A 67 12.225 8.895 30.721 1.00 24.65 C </line>
<line>ATOM 535 CA ARG A 68 14.970 11.475 30.251 1.00 23.71 C </line>
<line>ATOM 546 CA THR A 69 13.636 14.777 31.592 1.00 27.59 C </line>
<line>ATOM 553 CA PRO A 70 14.499 15.086 35.306 1.00 38.01 C </line>
<line>ATOM 560 CA GLY A 71 11.632 16.686 37.176 1.00 43.59 C </line>
<line>ATOM 564 CA SER A 72 9.088 16.015 34.426 1.00 39.20 C </line>
<line>ATOM 570 CA ARG A 73 5.496 16.176 35.734 1.00 36.98 C </line>
<line>ATOM 581 CA ASN A 74 3.716 13.965 33.130 1.00 26.44 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ARG SER GLY PRO THR ARG GLY ASP ASN CYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 4.40 6.40 7.65 11.30 12.84 10.98 13.13 12.21 9.78 7.10 3.80 </line>
<line>CYS CA 4.22 7.34 7.60 11.37 11.99 9.66 10.80 9.19 6.50 3.79 </line>
<line>ASN CA 5.30 7.65 6.75 9.99 9.80 7.62 7.87 5.58 3.79 </line>
<line>ASP CA 8.93 10.71 8.63 11.27 9.78 6.73 5.52 3.78 </line>
<line>GLY CA 10.19 11.11 8.62 10.14 8.03 6.11 3.80 </line>
<line>ARG CA 11.88 11.91 8.52 9.29 6.23 3.81 </line>
<line>THR CA 10.07 9.24 5.50 6.23 3.83 </line>
<line>PRO CA 11.06 9.08 5.56 3.78 </line>
<line>GLY CA 9.30 6.32 3.81 </line>
<line>SER CA 5.89 3.83 </line>
<line>ARG CA 3.85 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>TRP CA 369</line>
<line>CYS CA 357</line>
<line>ASN CA 284</line>
<line>ASP CA 285</line>
<line>GLY CA 204</line>
<line>ARG CA 209</line>
<line>THR CA 231</line>
<line>PRO CA 175</line>
<line>GLY CA 173</line>
<line>SER CA 249</line>
<line>ARG CA 228</line>
<line>ASN CA 277</line>
</n14>
</entryChain>
<parallel>
<x>12.548999786376953</x>
<y>0.8230000138282776</y>
<z>2.1440000534057617</z>
</parallel>
<rotation>
<x>0.4259999990463257</x>
<y>-0.8410000205039978</y>
<z>-0.33399999141693115</z>
<x>-0.3569999933242798</x>
<y>-0.4959999918937683</y>
<z>0.7919999957084656</z>
<x>0.8309999704360962</x>
<y>0.21799999475479126</y>
<z>0.5109999775886536</z>
</rotation>
<rmsd>2.059019088745117</rmsd>
<dmax>2.7024788856506348</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1IIZ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IIZA</entryIDChain>
<sequence>IYKRT-KFDAW</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 739 CA ILE A 94 8.389 21.074 40.642 1.00 18.37 C </line>
<line>ATOM 747 CA TYR A 95 4.907 21.601 42.055 1.00 10.53 C </line>
<line>ATOM 759 CA LYS A 96 6.316 23.446 45.060 1.00 27.94 C </line>
<line>ATOM 768 CA ARG A 97 7.711 25.966 42.579 1.00 34.39 C </line>
<line>ATOM 779 CA THR A 98 5.391 26.251 39.577 1.00 19.08 C </line>
<line>ATOM 786 CA LYS A 99 2.314 24.302 40.743 1.00 22.14 C </line>
<line>ATOM 795 CA PHE A 100 0.766 22.457 37.777 1.00 13.39 C </line>
<line>ATOM 806 CA ASP A 101 1.389 25.385 35.428 1.00 32.33 C </line>
<line>ATOM 814 CA ALA A 102 4.501 23.454 34.404 1.00 25.00 C </line>
<line>ATOM 819 CA TRP A 103 2.466 20.701 32.733 1.00 30.61 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA ASP PHE LYS THR ARG LYS TYR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.89 7.73 9.74 8.26 6.88 6.08 5.31 5.43 3.79 </line>
<line>TYR CA 9.68 7.88 8.40 6.02 3.97 5.29 5.21 3.80 </line>
<line>LYS CA 13.20 10.81 10.99 9.21 5.95 6.23 3.80 </line>
<line>ARG CA 12.34 9.13 9.56 9.14 5.94 3.80 </line>
<line>THR CA 9.28 5.95 5.83 6.25 3.82 </line>
<line>LYS CA 8.78 6.76 5.50 3.82 </line>
<line>PHE CA 5.60 5.13 3.81 </line>
<line>ASP CA 5.51 3.80 </line>
<line>ALA CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 362</line>
<line>TYR CA 336</line>
<line>LYS CA 241</line>
<line>ARG CA 205</line>
<line>THR CA 241</line>
<line>LYS CA 289</line>
<line>PHE CA 349</line>
<line>ASP CA 273</line>
<line>ALA CA 350</line>
<line>TRP CA 381</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>IVSDGNGMNAW</sequence>
<secondary-structure>HH GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 749 CA ILE A 98 -2.802 22.185 28.013 1.00 21.11 C </line>
<line>ATOM 757 CA VAL A 99 -5.184 24.781 26.519 1.00 22.22 C </line>
<line>ATOM 764 CA SER A 100 -7.330 24.587 29.671 1.00 27.15 C </line>
<line>ATOM 770 CA ASP A 101 -4.290 25.337 31.850 1.00 38.20 C </line>
<line>ATOM 778 CA GLY A 102 -5.114 29.040 32.052 1.00 37.61 C </line>
<line>ATOM 782 CA ASN A 103 -2.780 30.520 29.424 1.00 31.41 C </line>
<line>ATOM 790 CA GLY A 104 -4.895 29.262 26.537 1.00 18.47 C </line>
<line>ATOM 794 CA MET A 105 -3.139 28.731 23.200 1.00 18.11 C </line>
<line>ATOM 802 CA ASN A 106 -0.263 31.047 24.287 1.00 19.65 C </line>
<line>ATOM 810 CA ALA A 107 1.248 27.801 25.580 1.00 18.46 C </line>
<line>ATOM 815 CA TRP A 108 2.308 27.198 21.964 1.00 16.13 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA ASN MET GLY ASN GLY ASP SER VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.37 7.34 9.94 8.13 7.53 8.45 8.29 5.18 5.39 3.83 </line>
<line>VAL CA 9.10 7.17 8.27 5.55 4.49 6.87 6.98 5.43 3.82 </line>
<line>SER CA 12.61 10.03 10.98 8.75 6.13 7.48 5.51 3.81 </line>
<line>ASP CA 12.03 8.72 10.30 9.36 6.63 5.92 3.80 </line>
<line>GLY CA 12.66 9.16 9.37 9.07 5.52 3.81 </line>
<line>ASN CA 9.62 6.20 5.74 6.49 3.79 </line>
<line>GLY CA 8.78 6.39 5.45 3.81 </line>
<line>MET CA 5.79 5.08 3.85 </line>
<line>ASN CA 5.18 3.81 </line>
<line>ALA CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 379</line>
<line>VAL CA 351</line>
<line>SER CA 249</line>
<line>ASP CA 234</line>
<line>GLY CA 181</line>
<line>ASN CA 207</line>
<line>GLY CA 281</line>
<line>MET CA 370</line>
<line>ASN CA 293</line>
<line>ALA CA 343</line>
<line>TRP CA 392</line>
</n14>
</entryChain>
<parallel>
<x>8.774999618530273</x>
<y>-3.061000108718872</y>
<z>12.715999603271484</z>
</parallel>
<rotation>
<x>0.3709999918937683</x>
<y>-0.03200000151991844</y>
<z>-0.9279999732971191</z>
<x>-0.6299999952316284</x>
<y>0.7250000238418579</y>
<z>-0.2770000100135803</z>
<x>0.6819999814033508</x>
<y>0.6880000233650208</y>
<z>0.24899999797344208</z>
</rotation>
<rmsd>1.3127520084381104</rmsd>
<dmax>3.1448850631713867</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>TQATN-RNTDG</sequence>
<secondary-structure> EEE-EE </secondary-structure>
<atom-coordinate>
<line>ATOM 312 CA THR A 40 3.180 13.452 13.726 1.00 18.57 C </line>
<line>ATOM 319 CA GLN A 41 6.791 12.243 14.073 1.00 16.69 C </line>
<line>ATOM 328 CA ALA A 42 8.383 15.632 14.680 1.00 17.58 C </line>
<line>ATOM 333 CA THR A 43 10.567 16.020 17.757 1.00 17.61 C </line>
<line>ATOM 340 CA ASN A 44 12.666 18.958 18.875 1.00 21.79 C </line>
<line>ATOM 348 CA ARG A 45 14.957 19.103 21.865 1.00 22.74 C </line>
<line>ATOM 359 CA ASN A 46 15.072 22.180 24.046 1.00 28.17 C </line>
<line>ATOM 367 CA THR A 47 17.952 23.861 25.865 1.00 32.18 C </line>
<line>ATOM 374 CA ASP A 48 16.595 22.893 29.273 1.00 25.42 C </line>
<line>ATOM 382 CA GLY A 49 16.972 19.252 28.213 1.00 22.61 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASP THR ASN ARG ASN THR ALA GLN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 20.83 22.60 21.77 18.00 15.39 12.12 8.80 5.72 3.82 </line>
<line>GLN CA 18.78 20.99 19.96 16.33 13.21 10.13 6.49 3.79 </line>
<line>ALA CA 16.43 18.25 16.86 13.24 10.34 6.86 3.79 </line>
<line>THR CA 12.68 14.70 13.48 9.89 6.76 3.78 </line>
<line>ASN CA 10.29 11.79 10.04 6.55 3.77 </line>
<line>ARG CA 6.66 8.48 6.90 3.77 </line>
<line>ASN CA 5.44 5.49 3.80 </line>
<line>THR CA 5.26 3.79 </line>
<line>ASP CA 3.81 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 346</line>
<line>GLN CA 272</line>
<line>ALA CA 298</line>
<line>THR CA 296</line>
<line>ASN CA 274</line>
<line>ARG CA 224</line>
<line>ASN CA 206</line>
<line>THR CA 141</line>
<line>ASP CA 157</line>
<line>GLY CA 189</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IIZ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IIZA</entryIDChain>
<sequence>TDKIANVNKNG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 307 CA THR A 37 6.581 5.095 33.787 1.00 12.57 C </line>
<line>ATOM 314 CA ASP A 38 8.953 4.656 30.837 1.00 11.83 C </line>
<line>ATOM 322 CA LYS A 39 7.326 7.030 28.364 1.00 12.85 C </line>
<line>ATOM 331 CA ILE A 40 9.606 9.545 26.699 1.00 14.34 C </line>
<line>ATOM 339 CA ALA A 41 8.018 12.471 24.867 1.00 13.63 C </line>
<line>ATOM 344 CA ASN A 42 9.125 13.529 21.389 1.00 31.47 C </line>
<line>ATOM 352 CA VAL A 43 11.416 16.585 21.143 1.00 21.34 C </line>
<line>ATOM 359 CA ASN A 44 9.705 19.946 21.752 1.00 11.14 C </line>
<line>ATOM 367 CA LYS A 45 10.488 23.149 19.824 1.00 23.90 C </line>
<line>ATOM 376 CA ASN A 46 13.534 23.639 22.111 1.00 49.24 C </line>
<line>ATOM 384 CA GLY A 47 15.659 20.439 21.932 1.00 24.21 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN LYS ASN VAL ASN ALA ILE LYS ASP THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 21.41 22.99 23.16 19.37 17.76 15.21 11.66 8.90 5.81 3.81 </line>
<line>ASP CA 19.32 21.39 21.58 17.80 15.57 12.96 9.88 6.44 3.79 </line>
<line>LYS CA 17.05 18.80 18.51 14.70 12.66 9.70 6.50 3.78 </line>
<line>ILE CA 13.34 15.33 15.27 11.52 9.15 6.66 3.80 </line>
<line>ALA CA 11.42 12.76 12.06 8.27 6.51 3.80 </line>
<line>ASN CA 9.53 11.05 9.84 6.45 3.83 </line>
<line>VAL CA 5.79 7.43 6.76 3.82 </line>
<line>ASN CA 5.98 5.33 3.82 </line>
<line>LYS CA 6.21 3.84 </line>
<line>ASN CA 3.85 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 365</line>
<line>ASP CA 300</line>
<line>LYS CA 310</line>
<line>ILE CA 293</line>
<line>ALA CA 288</line>
<line>ASN CA 186</line>
<line>VAL CA 167</line>
<line>ASN CA 179</line>
<line>LYS CA 109</line>
<line>ASN CA 131</line>
<line>GLY CA 158</line>
</n14>
</entryChain>
<parallel>
<x>2.184000015258789</x>
<y>5.372000217437744</y>
<z>-7.047999858856201</z>
</parallel>
<rotation>
<x>0.28999999165534973</x>
<y>-0.7580000162124634</y>
<z>0.5839999914169312</z>
<x>0.041999999433755875</x>
<y>0.6200000047683716</y>
<z>0.7839999794960022</z>
<x>-0.9559999704360962</x>
<y>-0.20200000703334808</y>
<z>0.21199999749660492</z>
</rotation>
<rmsd>1.0597310066223145</rmsd>
<dmax>1.8677829504013062</dmax>
</indel>