NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1K9PA-1CNPA
confEVID 1K9PA-1CNPA
pdbIDA 1K9P
pdbIDB 1CNP
pdbChainA A
pdbChainB A
identity 0.755599975585938
indelSize 2
alignment <alignment>
<seq1>-ACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKL-QDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG</seq1>
<seq2>MASPLDQAIGLLIGIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIVKLMDDLDRN-KDQEVNFQEYITFLGALAMIYNEALKG</seq2>
<ss_1>- HHHHHHHHHHHHHHHHH EEEEEHHHHHHHHHH HHHH- HHHHHHHHHHHH EEEEEHHHHHHHHHHHHHH GGG </ss_1>
<ss_2> HHHHHHHHHHH HHHHHHIIIII HHHHHHH GGG - HHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1K9P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1K9PA</entryIDChain>
<sequence>IGSKL-QDAEI</sequence>
<secondary-structure> HHHH- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 338 CA ILE A 44 -0.145 12.545 31.111 1.00 13.31 C </line>
<line>ATOM 346 CA GLY A 45 -0.818 14.582 27.972 1.00 14.69 C </line>
<line>ATOM 350 CA SER A 46 -0.926 17.948 29.765 1.00 14.53 C </line>
<line>ATOM 356 CA LYS A 47 2.340 17.226 31.579 1.00 18.78 C </line>
<line>ATOM 365 CA LEU A 48 4.646 15.956 28.828 1.00 23.77 C </line>
<line>ATOM 373 CA GLN A 49 6.382 19.376 28.486 1.00 25.52 C </line>
<line>ATOM 382 CA ASP A 50 7.170 19.581 32.210 1.00 21.51 C </line>
<line>ATOM 390 CA ALA A 51 10.971 19.771 32.529 1.00 17.45 C </line>
<line>ATOM 395 CA GLU A 52 11.365 16.572 34.547 1.00 19.12 C </line>
<line>ATOM 404 CA ILE A 53 8.814 14.420 32.734 1.00 16.59 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLU ALA ASP GLN LEU LYS SER GLY ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.30 12.67 13.33 10.21 9.81 6.31 5.32 5.62 3.80 </line>
<line>GLY CA 10.75 13.99 13.66 10.33 8.67 5.70 5.47 3.82 </line>
<line>SER CA 10.78 13.26 12.35 8.61 7.56 5.99 3.81 </line>
<line>LYS CA 7.15 9.52 9.05 5.41 5.53 3.81 </line>
<line>LEU CA 5.92 8.84 8.26 5.56 3.85 </line>
<line>GLN CA 6.97 8.33 6.13 3.81 </line>
<line>ASP CA 5.44 5.67 3.82 </line>
<line>ALA CA 5.77 3.80 </line>
<line>GLU CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 255</line>
<line>GLY CA 195</line>
<line>SER CA 156</line>
<line>LYS CA 226</line>
<line>LEU CA 248</line>
<line>GLN CA 180</line>
<line>ASP CA 189</line>
<line>ALA CA 172</line>
<line>GLU CA 233</line>
<line>ILE CA 293</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CNP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CNPA</entryIDChain>
<sequence>IGSKLQDAEIV</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 700 CA ILE A 44 12.198 -0.766 -18.694 1.00 0.00 C </line>
<line>ATOM 719 CA GLY A 45 15.552 1.090 -18.964 1.00 0.00 C </line>
<line>ATOM 726 CA SER A 46 18.073 -1.763 -18.572 1.00 0.00 C </line>
<line>ATOM 737 CA LYS A 47 16.512 -3.695 -21.516 1.00 0.00 C </line>
<line>ATOM 759 CA LEU A 48 17.473 -0.794 -23.813 1.00 0.00 C </line>
<line>ATOM 778 CA GLN A 49 20.583 1.083 -22.560 1.00 0.00 C </line>
<line>ATOM 795 CA ASP A 50 18.661 3.026 -19.842 1.00 0.00 C </line>
<line>ATOM 807 CA ALA A 51 19.123 6.489 -21.455 1.00 0.00 C </line>
<line>ATOM 817 CA GLU A 52 19.491 8.142 -18.020 1.00 0.00 C </line>
<line>ATOM 832 CA ILE A 53 19.594 11.552 -19.779 1.00 0.00 C </line>
<line>ATOM 851 CA VAL A 54 15.930 11.088 -20.860 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE GLU ALA ASP GLN LEU LYS SER GLY ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 12.61 14.41 11.53 10.40 7.58 9.42 7.35 5.93 5.96 3.84 </line>
<line>GLY CA 10.18 11.25 8.13 6.94 3.77 6.18 5.55 5.51 3.83 </line>
<line>SER CA 13.23 13.46 10.02 8.80 4.99 5.50 5.36 3.85 </line>
<line>LYS CA 14.81 15.65 12.70 10.51 7.25 6.36 3.82 </line>
<line>LEU CA 12.34 13.16 10.84 7.83 5.64 3.84 </line>
<line>GLN CA 11.16 10.88 8.46 5.71 3.85 </line>
<line>ASP CA 8.57 8.58 5.49 3.85 </line>
<line>ALA CA 5.63 5.35 3.83 </line>
<line>GLU CA 5.42 3.84 </line>
<line>ILE CA 3.85 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ILE CA 530</line>
<line>GLY CA 510</line>
<line>SER CA 381</line>
<line>LYS CA 291</line>
<line>LEU CA 299</line>
<line>GLN CA 292</line>
<line>ASP CA 430</line>
<line>ALA CA 383</line>
<line>GLU CA 459</line>
<line>ILE CA 358</line>
<line>VAL CA 413</line>
</n14>
</entryChain>
<parallel>
<x>-13.432999610900879</x>
<y>15.656999588012695</y>
<z>50.41999816894531</z>
</parallel>
<rotation>
<x>0.11400000005960464</x>
<y>0.9580000042915344</y>
<z>-0.2639999985694885</z>
<x>0.9259999990463257</x>
<y>-0.006000000052154064</y>
<z>0.37700000405311584</z>
<x>-0.36000001430511475</x>
<y>0.28700000047683716</y>
<z>0.8880000114440918</z>
</rotation>
<rmsd>3.344180107116699</rmsd>
<dmax>5.341976165771484</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CNP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CNPA</entryIDChain>
<sequence>DLDRN-KDQEV</sequence>
<secondary-structure> GGG - </secondary-structure>
<atom-coordinate>
<line>ATOM 937 CA ASP A 59 12.428 12.311 -12.889 1.00 0.00 C </line>
<line>ATOM 949 CA LEU A 60 8.904 13.864 -12.306 1.00 0.00 C </line>
<line>ATOM 968 CA ASP A 61 9.278 12.540 -8.744 1.00 0.00 C </line>
<line>ATOM 980 CA ARG A 62 10.439 16.162 -8.461 1.00 0.00 C </line>
<line>ATOM 1004 CA ASN A 63 6.647 17.031 -8.421 1.00 0.00 C </line>
<line>ATOM 1018 CA LYS A 64 5.926 18.615 -4.983 1.00 0.00 C </line>
<line>ATOM 1040 CA ASP A 65 6.679 16.580 -1.816 1.00 0.00 C </line>
<line>ATOM 1052 CA GLN A 66 10.346 16.060 -2.721 1.00 0.00 C </line>
<line>ATOM 1069 CA GLU A 67 10.389 13.041 -0.417 1.00 0.00 C </line>
<line>ATOM 1084 CA VAL A 68 7.634 11.443 -2.524 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU GLN ASP LYS ASN ARG ASP LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 11.45 12.66 11.04 13.19 12.02 8.70 6.20 5.21 3.89 </line>
<line>LEU CA 10.16 12.01 9.94 11.06 9.22 5.50 4.74 3.82 </line>
<line>ASP CA 6.53 8.42 7.06 8.43 7.89 5.21 3.81 </line>
<line>ARG CA 8.09 8.63 5.74 7.65 6.20 3.89 </line>
<line>ASN CA 8.18 9.69 6.86 6.62 3.85 </line>
<line>LYS CA 7.77 8.48 5.58 3.84 </line>
<line>ASP CA 5.27 5.31 3.81 </line>
<line>GLN CA 5.36 3.80 </line>
<line>GLU CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASP CA 660</line>
<line>LEU CA 583</line>
<line>ASP CA 682</line>
<line>ARG CA 524</line>
<line>ASN CA 435</line>
<line>LYS CA 341</line>
<line>ASP CA 405</line>
<line>GLN CA 480</line>
<line>GLU CA 569</line>
<line>VAL CA 653</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1K9P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1K9PA</entryIDChain>
<sequence>EDLDRNKDQEV</sequence>
<secondary-structure>HHHHH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 444 CA GLU A 58 13.536 11.662 26.176 1.00 21.38 C </line>
<line>ATOM 453 CA ASP A 59 15.720 9.108 27.967 1.00 19.45 C </line>
<line>ATOM 461 CA LEU A 60 13.310 6.424 26.769 1.00 17.89 C </line>
<line>ATOM 469 CA ASP A 61 13.600 7.678 23.196 1.00 21.27 C </line>
<line>ATOM 477 CA ARG A 62 17.400 7.814 23.343 1.00 23.26 C </line>
<line>ATOM 488 CA ASN A 63 17.411 4.204 24.590 1.00 19.67 C </line>
<line>ATOM 496 CA LYS A 64 14.403 2.986 22.560 1.00 20.54 C </line>
<line>ATOM 505 CA ASP A 65 15.795 -0.467 21.736 1.00 21.01 C </line>
<line>ATOM 513 CA GLN A 66 16.878 -1.486 25.219 1.00 18.81 C </line>
<line>ATOM 522 CA GLU A 67 14.698 -4.107 26.895 1.00 17.57 C </line>
<line>ATOM 535 CA VAL A 68 12.996 -3.588 30.253 1.00 14.26 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU GLN ASP LYS ASN ARG ASP LEU ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 15.79 15.83 13.60 13.11 9.44 8.55 6.15 4.98 5.28 3.81 </line>
<line>ASP CA 13.18 13.30 11.01 11.42 8.27 6.19 5.09 5.41 3.80 </line>
<line>LEU CA 10.61 10.62 8.81 8.89 5.54 5.15 5.51 3.80 </line>
<line>ASP CA 13.31 12.40 9.94 8.56 4.80 5.34 3.81 </line>
<line>ARG CA 14.04 12.73 9.50 8.59 5.74 3.82 </line>
<line>ASN CA 10.60 9.04 5.75 5.71 3.83 </line>
<line>LYS CA 10.22 8.32 5.76 3.81 </line>
<line>ASP CA 9.49 6.41 3.79 </line>
<line>GLN CA 6.70 3.80 </line>
<line>GLU CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLU CA 253</line>
<line>ASP CA 256</line>
<line>LEU CA 305</line>
<line>ASP CA 230</line>
<line>ARG CA 180</line>
<line>ASN CA 204</line>
<line>LYS CA 232</line>
<line>ASP CA 199</line>
<line>GLN CA 229</line>
<line>GLU CA 286</line>
<line>VAL CA 336</line>
</n14>
</entryChain>
<parallel>
<x>-6.249000072479248</x>
<y>9.930999755859375</y>
<z>-32.16299819946289</z>
</parallel>
<rotation>
<x>-0.9789999723434448</x>
<y>-0.20200000703334808</y>
<z>-0.02800000086426735</z>
<x>0.03200000151991844</x>
<y>-0.014000000432133675</y>
<z>-0.9990000128746033</z>
<x>0.20200000703334808</x>
<y>-0.9789999723434448</y>
<z>0.019999999552965164</z>
</rotation>
<rmsd>2.5775279998779297</rmsd>
<dmax>4.247460842132568</dmax>
</indel>