NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1J3YA-2ZLWD
confEVID 1J3YA-2ZLWD
pdbIDA 1J3Y
pdbIDB 2ZLW
pdbChainA A
pdbChainB D
identity 0.42179998755455
indelSize 1
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>VQLSGEEKAAVLALWDKVN--EEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG - ----- HHHHHHHHHHHHHHHHHHH HHHH HHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH --HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>WDKVN--EEEVG</sequence>
<secondary-structure> --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3364 CA TRP D 15 -34.693 14.376 22.932 1.00 9.39 C </line>
<line>ATOM 3378 CA ASP D 16 -38.152 15.870 23.251 1.00 14.74 C </line>
<line>ATOM 3386 CA LYS D 17 -39.432 12.308 23.248 1.00 11.42 C </line>
<line>ATOM 3395 CA VAL D 18 -36.675 11.004 25.537 1.00 8.25 C </line>
<line>ATOM 3402 CA ASN D 19 -38.278 10.039 28.858 1.00 20.92 C </line>
<line>ATOM 3410 CA GLU D 20 -35.552 10.733 31.453 1.00 19.36 C </line>
<line>ATOM 3419 CA GLU D 21 -36.596 8.388 34.268 1.00 17.54 C </line>
<line>ATOM 3428 CA GLU D 22 -37.459 5.552 31.900 1.00 16.80 C </line>
<line>ATOM 3437 CA VAL D 23 -34.329 5.859 29.756 1.00 11.40 C </line>
<line>ATOM 3444 CA GLY D 24 -32.072 6.515 32.744 1.00 15.19 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU GLU GLU ASN VAL LYS ASP TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.84 10.92 12.88 12.96 9.31 8.17 4.70 5.18 3.78 </line>
<line>ASP CA 14.65 12.54 13.48 13.41 10.02 8.09 5.58 3.79 </line>
<line>LYS CA 13.34 10.49 11.15 12.04 9.21 6.16 3.81 </line>
<line>VAL CA 9.66 7.06 8.42 9.11 6.03 3.81 </line>
<line>ASN CA 8.13 5.82 5.48 5.90 3.83 </line>
<line>GLU CA 5.62 5.30 5.54 3.81 </line>
<line>GLU CA 5.13 5.65 3.79 </line>
<line>GLU CA 5.54 3.81 </line>
<line>VAL CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 345</line>
<line>ASP CA 234</line>
<line>LYS CA 240</line>
<line>VAL CA 335</line>
<line>ASN CA 287</line>
<line>GLU CA 319</line>
<line>GLU CA 288</line>
<line>GLU CA 310</line>
<line>VAL CA 374</line>
<line>GLY CA 398</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1J3Y</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1J3YA</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 93 CA TRP A 14 -4.822 62.263 -15.808 1.00 10.53 C </line>
<line>ATOM 107 CA GLY A 15 -7.774 60.376 -17.357 1.00 12.47 C </line>
<line>ATOM 111 CA LYS A 16 -9.141 63.705 -18.609 1.00 13.99 C </line>
<line>ATOM 120 CA VAL A 17 -5.744 64.738 -19.893 1.00 12.00 C </line>
<line>ATOM 127 CA GLY A 18 -6.096 61.582 -22.002 1.00 12.14 C </line>
<line>ATOM 131 CA ALA A 19 -4.563 61.772 -25.468 1.00 10.81 C </line>
<line>ATOM 136 CA HIS A 20 -3.264 65.263 -24.708 1.00 9.59 C </line>
<line>ATOM 146 CA ALA A 21 -0.617 64.002 -22.244 1.00 9.92 C </line>
<line>ATOM 151 CA GLY A 22 2.272 64.409 -24.690 1.00 10.68 C </line>
<line>ATOM 155 CA GLU A 23 1.164 67.938 -25.689 1.00 10.98 C </line>
<line>ATOM 164 CA TYR A 24 0.878 68.954 -22.018 1.00 9.39 C </line>
<line>ATOM 176 CA GLY A 25 4.306 67.458 -21.251 1.00 9.01 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 11.83 10.76 12.87 11.57 7.88 9.52 9.68 6.36 4.86 5.35 3.83 </line>
<line>GLY CA 14.53 13.04 14.37 13.08 9.39 9.91 8.83 5.08 5.44 3.81 </line>
<line>LYS CA 14.21 11.81 13.20 12.95 9.27 8.61 8.47 5.03 3.78 </line>
<line>VAL CA 10.50 8.13 9.57 9.35 5.69 5.44 6.42 3.81 </line>
<line>GLY CA 11.97 10.15 10.33 9.23 5.99 5.38 3.79 </line>
<line>ALA CA 11.35 9.65 8.42 7.37 5.56 3.80 </line>
<line>HIS CA 8.61 6.17 5.27 5.60 3.83 </line>
<line>ALA CA 6.10 5.18 5.53 3.81 </line>
<line>GLY CA 5.03 5.45 3.83 </line>
<line>GLU CA 5.46 3.82 </line>
<line>TYR CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 390</line>
<line>GLY CA 260</line>
<line>LYS CA 251</line>
<line>VAL CA 315</line>
<line>GLY CA 229</line>
<line>ALA CA 198</line>
<line>HIS CA 257</line>
<line>ALA CA 325</line>
<line>GLY CA 287</line>
<line>GLU CA 313</line>
<line>TYR CA 367</line>
<line>GLY CA 414</line>
</n14>
</entryChain>
<parallel>
<x>-33.2599983215332</x>
<y>-52.59299850463867</y>
<z>48.46699905395508</z>
</parallel>
<rotation>
<x>0.6639999747276306</x>
<y>-0.08500000089406967</y>
<z>0.7429999709129333</z>
<x>0.21299999952316284</x>
<y>-0.9309999942779541</y>
<z>-0.296999990940094</z>
<x>0.7170000076293945</x>
<y>0.35499998927116394</y>
<z>-0.6000000238418579</z>
</rotation>
<rmsd>1.6341650485992432</rmsd>
<dmax>3.4651689529418945</dmax>
</indel>