NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JJ4B-1R8HE
confEVID 1JJ4B-1R8HE
pdbIDA 1JJ4
pdbIDB 1R8H
pdbChainA B
pdbChainB E
identity 0.46340000629425
indelSize 2
alignment <alignment>
<seq1>-HMTPIIHLKGDRNSLKCLRYRLRKH-SDHYRDISSTWHWTE-----KTGILTVTYHSETQRTKFLNTVAIPDSVQILVGYMT----</seq1>
<seq2>SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMHLL</seq2>
<ss_1>- EEEEEEEE HHHHHHHHHHGGGG-GGG ----- EEEEEE HHHHHHHHHH EEEEEEE ----</ss_1>
<ss_2> EEEEEEEE HHHHHHHHHHHHHH GGG EEEEE HHHHHHHHHH EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1JJ4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJ4B</entryIDChain>
<sequence>RLRKH-SDHYR</sequence>
<secondary-structure>HGGGG-GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1413 CA ARG B 305 21.827 9.269 27.437 1.00 22.30 C </line>
<line>ATOM 1424 CA LEU B 306 19.866 6.421 25.889 1.00 24.81 C </line>
<line>ATOM 1432 CA ARG B 307 22.745 5.945 23.455 1.00 29.74 C </line>
<line>ATOM 1443 CA LYS B 308 25.264 5.335 26.257 1.00 32.98 C </line>
<line>ATOM 1452 CA HIS B 309 23.846 1.818 26.518 1.00 34.79 C </line>
<line>ATOM 1457 CA SER B 310 22.627 1.188 22.969 1.00 35.44 C </line>
<line>ATOM 1461 CA ASP B 311 22.134 -2.517 23.695 1.00 34.53 C </line>
<line>ATOM 1466 CA HIS B 312 18.691 -1.795 25.179 1.00 31.82 C </line>
<line>ATOM 1471 CA TYR B 313 17.152 -0.821 21.805 1.00 28.22 C </line>
<line>ATOM 1483 CA ARG B 314 17.667 -1.135 18.038 1.00 26.40 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TYR HIS ASP SER HIS LYS ARG LEU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 14.62 12.47 11.72 12.37 9.27 7.77 5.36 5.27 3.79 </line>
<line>LEU CA 11.12 8.75 8.33 9.48 6.60 6.12 5.52 3.80 </line>
<line>ARG CA 10.26 8.93 8.91 8.49 4.78 5.26 3.82 </line>
<line>LYS CA 12.93 11.11 9.76 8.83 5.91 3.80 </line>
<line>HIS CA 10.90 8.60 6.44 5.45 3.81 </line>
<line>SER CA 7.37 5.95 5.41 3.81 </line>
<line>ASP CA 7.34 5.59 3.82 </line>
<line>HIS CA 7.24 3.83 </line>
<line>TYR CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>ARG CA 250</line>
<line>LEU CA 324</line>
<line>ARG CA 251</line>
<line>LYS CA 181</line>
<line>HIS CA 207</line>
<line>SER CA 234</line>
<line>ASP CA 211</line>
<line>HIS CA 273</line>
<line>TYR CA 323</line>
<line>ARG CA 273</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1R8H</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1R8HE</entryIDChain>
<sequence>RLNDKHRHLFD</sequence>
<secondary-structure>HHHHH GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 3255 CA ARG E 302 15.337 27.167 114.432 1.00 42.93 C </line>
<line>ATOM 3266 CA LEU E 303 13.460 30.345 113.493 1.00 40.15 C </line>
<line>ATOM 3274 CA ASN E 304 16.026 31.175 110.812 1.00 45.60 C </line>
<line>ATOM 3282 CA ASP E 304A 15.874 27.577 109.484 1.00 49.26 C </line>
<line>ATOM 3290 CA LYS E 305 12.075 27.011 109.377 1.00 46.67 C </line>
<line>ATOM 3299 CA HIS E 306 10.255 30.292 109.937 1.00 45.41 C </line>
<line>ATOM 3309 CA ARG E 307 11.931 33.205 108.174 1.00 45.02 C </line>
<line>ATOM 3320 CA HIS E 308 8.663 34.061 106.415 1.00 42.72 C </line>
<line>ATOM 3330 CA LEU E 309 6.787 34.518 109.747 1.00 39.66 C </line>
<line>ATOM 3338 CA PHE E 310 8.884 37.505 110.934 1.00 36.43 C </line>
<line>ATOM 3349 CA ASP E 311 10.908 40.477 109.756 1.00 34.26 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PHE LEU HIS ARG HIS LYS ASP ASN LEU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 14.79 12.68 12.21 12.50 9.34 7.47 6.02 4.99 5.44 3.81 </line>
<line>LEU CA 11.10 8.87 8.72 9.32 6.23 4.79 5.47 5.44 3.80 </line>
<line>ASN CA 10.67 9.54 9.88 9.05 5.28 5.90 5.92 3.84 </line>
<line>ASP CA 13.83 12.23 11.44 10.17 7.00 6.26 3.84 </line>
<line>LYS CA 13.52 11.08 9.19 8.37 6.31 3.79 </line>
<line>HIS CA 10.21 7.41 5.47 5.40 3.80 </line>
<line>ARG CA 7.51 5.95 5.54 3.81 </line>
<line>HIS CA 7.57 5.69 3.85 </line>
<line>LEU CA 7.25 3.84 </line>
<line>PHE CA 3.78 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ARG CA 269</line>
<line>LEU CA 345</line>
<line>ASN CA 265</line>
<line>ASP CA 188</line>
<line>LYS CA 211</line>
<line>HIS CA 285</line>
<line>ARG CA 271</line>
<line>HIS CA 245</line>
<line>LEU CA 313</line>
<line>PHE CA 356</line>
<line>ASP CA 310</line>
</n14>
</entryChain>
<parallel>
<x>10.079000473022461</x>
<y>-27.884000778198242</y>
<z>-85.33499908447266</z>
</parallel>
<rotation>
<x>-0.2240000069141388</x>
<y>0.7799999713897705</y>
<z>-0.5839999914169312</z>
<x>-0.6710000038146973</x>
<y>-0.5580000281333923</y>
<z>-0.4880000054836273</z>
<x>-0.7059999704360962</x>
<y>0.28299999237060547</y>
<z>0.6489999890327454</z>
</rotation>
<rmsd>2.3176538944244385</rmsd>
<dmax>3.9266090393066406</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1JJ4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJ4B</entryIDChain>
<sequence>WHWTE-----KTGIL</sequence>
<secondary-structure> ----- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1523 CA TRP B 320 11.497 15.325 15.044 1.00 19.12 C </line>
<line>ATOM 1537 CA HIS B 321 7.991 16.778 15.114 1.00 21.85 C </line>
<line>ATOM 1547 CA TRP B 322 4.801 17.122 13.093 1.00 23.78 C </line>
<line>ATOM 1561 CA THR B 323 4.220 20.152 10.875 1.00 25.14 C </line>
<line>ATOM 1568 CA GLU B 328 3.311 20.850 18.073 1.00 32.45 C </line>
<line>ATOM 1573 CA LYS B 329 5.854 22.997 19.960 1.00 30.73 C </line>
<line>ATOM 1578 CA THR B 330 6.889 19.621 21.418 1.00 28.51 C </line>
<line>ATOM 1585 CA GLY B 331 9.311 17.165 19.829 1.00 25.08 C </line>
<line>ATOM 1589 CA ILE B 332 9.344 13.422 19.274 1.00 23.10 C </line>
<line>ATOM 1597 CA LEU B 333 11.927 10.711 19.721 1.00 22.52 C </line>
</atom-coordinate>
<distance-map>
<line> LEU ILE GLY THR LYS GLU THR TRP HIS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 6.58 5.11 5.57 8.96 10.72 10.33 9.68 7.20 3.80 </line>
<line>HIS CA 8.57 5.51 4.91 7.00 8.17 6.87 6.60 3.79 </line>
<line>TRP CA 11.65 8.52 8.11 8.94 9.10 6.40 3.80 </line>
<line>THR CA 15.06 11.92 10.72 10.89 9.66 7.29 </line>
<line>GLU CA 13.41 9.64 7.26 5.05 3.83 </line>
<line>LYS CA 13.71 10.21 6.78 3.82 </line>
<line>THR CA 10.38 7.00 3.80 </line>
<line>GLY CA 6.96 3.78 </line>
<line>ILE CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>TRP CA 245</line>
<line>HIS CA 208</line>
<line>TRP CA 151</line>
<line>THR CA 92</line>
<line>GLU CA 137</line>
<line>LYS CA 151</line>
<line>THR CA 221</line>
<line>GLY CA 274</line>
<line>ILE CA 327</line>
<line>LEU CA 405</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1R8H</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1R8HE</entryIDChain>
<sequence>WHWASPKAPHKHAIV</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3392 CA TRP E 317 21.686 40.519 124.333 1.00 25.33 C </line>
<line>ATOM 3406 CA HIS E 318 20.920 41.296 128.001 1.00 24.62 C </line>
<line>ATOM 3416 CA TRP E 319 20.493 44.167 130.391 1.00 23.25 C </line>
<line>ATOM 3430 CA ALA E 320 23.890 44.987 131.802 1.00 25.88 C </line>
<line>ATOM 3435 CA SER E 321 24.822 45.638 135.465 1.00 26.82 C </line>
<line>ATOM 3441 CA PRO E 322 22.884 44.617 138.584 1.00 28.67 C </line>
<line>ATOM 3448 CA LYS E 323 20.318 47.346 137.788 1.00 27.28 C </line>
<line>ATOM 3457 CA ALA E 324 18.256 45.150 135.476 1.00 28.66 C </line>
<line>ATOM 3462 CA PRO E 325 14.703 43.677 135.412 1.00 29.01 C </line>
<line>ATOM 3469 CA HIS E 326 16.210 40.197 134.976 1.00 29.38 C </line>
<line>ATOM 3479 CA LYS E 327 19.473 38.570 133.863 1.00 31.83 C </line>
<line>ATOM 3488 CA HIS E 328 18.251 36.275 131.098 1.00 32.87 C </line>
<line>ATOM 3498 CA ALA E 329 19.591 36.517 127.574 1.00 29.15 C </line>
<line>ATOM 3503 CA ILE E 330 17.157 38.122 125.103 1.00 24.88 C </line>
<line>ATOM 3511 CA VAL E 331 16.380 38.027 121.339 1.00 25.39 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ALA HIS LYS HIS PRO ALA LYS PRO SER ALA TRP HIS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 6.58 5.18 5.56 8.69 9.98 11.97 13.47 12.55 15.15 14.88 12.65 8.98 7.17 3.83 </line>
<line>HIS CA 8.70 5.71 4.98 6.47 6.62 8.49 9.96 8.82 11.52 11.26 9.48 6.07 3.76 </line>
<line>TRP CA 11.69 8.70 8.20 8.23 6.66 7.42 7.68 5.64 8.05 8.55 6.83 3.77 </line>
<line>ALA CA 14.64 11.72 10.40 10.40 8.06 9.59 9.96 6.73 7.36 6.87 3.84 </line>
<line>SER CA 18.13 14.92 13.15 12.24 9.01 10.20 10.31 6.58 5.35 3.81 </line>
<line>PRO CA 19.57 16.02 14.06 12.13 8.40 8.78 8.82 5.60 3.83 </line>
<line>LYS CA 19.31 16.00 14.90 13.10 9.65 8.71 7.12 3.80 </line>
<line>ALA CA 15.94 12.58 11.78 9.90 6.88 5.38 3.85 </line>
<line>PRO CA 15.26 11.96 11.69 9.27 7.16 3.82 </line>
<line>HIS CA 13.81 10.13 8.93 5.88 3.81 </line>
<line>LYS CA 12.91 9.07 6.62 3.80 </line>
<line>HIS CA 10.09 6.37 3.78 </line>
<line>ALA CA 7.17 3.82 </line>
<line>ILE CA 3.84 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>TRP CA 253</line>
<line>HIS CA 234</line>
<line>TRP CA 183</line>
<line>ALA CA 138</line>
<line>SER CA 101</line>
<line>PRO CA 98</line>
<line>LYS CA 92</line>
<line>ALA CA 132</line>
<line>PRO CA 157</line>
<line>HIS CA 187</line>
<line>LYS CA 203</line>
<line>HIS CA 265</line>
<line>ALA CA 305</line>
<line>ILE CA 353</line>
<line>VAL CA 407</line>
</n14>
</entryChain>
<parallel>
<x>-14.406999588012695</x>
<y>-22.2450008392334</y>
<z>-113.63999938964844</z>
</parallel>
<rotation>
<x>0.3540000021457672</x>
<y>0.675000011920929</y>
<z>-0.6480000019073486</z>
<x>-0.6460000276565552</x>
<y>-0.3240000009536743</y>
<z>-0.6909999847412109</z>
<x>-0.6759999990463257</x>
<y>0.6629999876022339</y>
<z>0.32100000977516174</z>
</rotation>
<rmsd>2.6295080184936523</rmsd>
<dmax>6.0669660568237305</dmax>
</indel>