NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JJ3B-2G4NF
confEVID 1JJ3B-2G4NF
pdbIDA 1JJ3
pdbIDB 2G4N
pdbChainA B
pdbChainB F
identity 0.354299992322922
indelSize 3
alignment <alignment>
<seq1>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILD-KVGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE - EEEEE EE GGGG HHHHHHHHHHHH- GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JJ3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJ3B</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1335 CA THR B 43 2.902 61.012 45.453 1.00 19.31 C </line>
<line>ATOM 1342 CA ASN B 44 0.889 58.267 43.787 1.00 21.42 C </line>
<line>ATOM 1350 CA ARG B 45 0.005 55.021 45.545 1.00 25.12 C </line>
<line>ATOM 1361 CA ASN B 46 -0.306 51.945 43.359 1.00 24.10 C </line>
<line>ATOM 1369 CA THR B 47 -2.319 48.782 43.948 1.00 23.87 C </line>
<line>ATOM 1376 CA ASP B 48 0.766 46.553 44.044 1.00 22.31 C </line>
<line>ATOM 1384 CA GLY B 49 1.832 48.257 47.262 1.00 19.18 C </line>
<line>ATOM 1388 CA SER B 50 4.356 50.580 45.640 1.00 14.71 C </line>
<line>ATOM 1394 CA THR B 51 4.256 54.365 45.439 1.00 12.47 C </line>
<line>ATOM 1401 CA ASP B 52 5.591 56.923 42.956 1.00 11.74 C </line>
<line>ATOM 1409 CA TYR B 53 7.497 59.789 44.599 1.00 10.74 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.83 5.49 6.78 10.53 12.93 14.68 13.38 9.84 6.66 3.79 </line>
<line>ASN CA 6.83 4.96 5.41 8.63 10.64 11.72 10.01 6.45 3.80 </line>
<line>ARG CA 8.93 6.44 4.30 6.22 7.21 8.63 6.85 3.79 </line>
<line>ASN CA 11.13 7.73 5.57 5.37 5.78 5.54 3.80 </line>
<line>THR CA 14.76 11.39 8.75 7.12 5.34 3.81 </line>
<line>ASP CA 14.86 11.49 8.67 5.63 3.79 </line>
<line>GLY CA 13.12 10.38 6.82 3.79 </line>
<line>SER CA 9.79 7.00 3.79 </line>
<line>THR CA 6.37 3.81 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 291</line>
<line>ASN CA 269</line>
<line>ARG CA 220</line>
<line>ASN CA 193</line>
<line>THR CA 135</line>
<line>ASP CA 162</line>
<line>GLY CA 193</line>
<line>SER CA 262</line>
<line>THR CA 314</line>
<line>ASP CA 397</line>
<line>TYR CA 430</line>
</n14>
</entryChain>
<parallel>
<x>57.426998138427734</x>
<y>-38.03300094604492</y>
<z>72.9489974975586</z>
</parallel>
<rotation>
<x>-0.9480000138282776</x>
<y>-0.2720000147819519</y>
<z>0.16300000250339508</z>
<x>-0.3089999854564667</x>
<y>0.6779999732971191</y>
<z>-0.6669999957084656</z>
<x>0.07100000232458115</x>
<y>-0.6819999814033508</y>
<z>-0.7269999980926514</z>
</rotation>
<rmsd>0.9159510135650635</rmsd>
<dmax>1.7490639686584473</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KKILD-KVGIN</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 5621 CA LYS F 93 37.237 17.355 121.601 1.00 39.21 C </line>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE GLY VAL LYS ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.85 9.70 8.78 10.10 8.64 6.08 5.20 5.33 3.82 </line>
<line>LYS CA 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 7.11 7.02 3.86 </line>
<line>GLY CA 5.57 3.81 </line>
<line>ILE CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 349</line>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JJ3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJ3B</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1733 CA LYS B 96 20.419 59.068 36.162 1.00 8.52 C </line>
<line>ATOM 1742 CA LYS B 97 20.526 55.454 37.373 1.00 9.85 C </line>
<line>ATOM 1751 CA ILE B 98 17.060 54.690 36.008 1.00 7.40 C </line>
<line>ATOM 1759 CA VAL B 99 17.713 56.174 32.542 1.00 8.27 C </line>
<line>ATOM 1766 CA SER B 100 20.921 54.103 32.348 1.00 11.11 C </line>
<line>ATOM 1772 CA ASP B 101 19.085 50.877 33.223 1.00 13.53 C </line>
<line>ATOM 1780 CA GLY B 102 18.369 49.832 29.644 1.00 13.33 C </line>
<line>ATOM 1784 CA ASN B 103 15.103 51.484 28.607 1.00 12.81 C </line>
<line>ATOM 1792 CA GLY B 104 16.207 55.107 28.413 1.00 10.24 C </line>
<line>ATOM 1796 CA MET B 105 13.434 57.541 29.312 1.00 7.01 C </line>
<line>ATOM 1804 CA ASN B 106 10.704 55.072 28.341 1.00 8.65 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.10 9.90 9.67 11.95 11.49 8.80 6.28 5.37 5.52 3.81 </line>
<line>LYS CA 13.35 10.94 9.95 11.05 9.80 6.34 5.22 5.64 3.80 </line>
<line>ILE CA 9.97 8.13 7.65 8.30 8.11 5.14 5.35 3.83 </line>
<line>VAL CA 8.25 5.53 4.52 6.66 7.00 5.51 3.82 </line>
<line>SER CA 11.02 8.78 6.22 7.40 5.66 3.81 </line>
<line>ASP CA 10.57 9.57 7.02 6.13 3.80 </line>
<line>GLY CA 9.38 9.16 5.83 3.80 </line>
<line>ASN CA 5.68 6.32 3.79 </line>
<line>GLY CA 5.50 3.80 </line>
<line>MET CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 366</line>
<line>LYS CA 317</line>
<line>ILE CA 372</line>
<line>VAL CA 352</line>
<line>SER CA 244</line>
<line>ASP CA 227</line>
<line>GLY CA 178</line>
<line>ASN CA 207</line>
<line>GLY CA 281</line>
<line>MET CA 376</line>
<line>ASN CA 294</line>
</n14>
</entryChain>
<parallel>
<x>21.46299934387207</x>
<y>-38.47700119018555</y>
<z>93.60199737548828</z>
</parallel>
<rotation>
<x>-0.9520000219345093</x>
<y>-0.30399999022483826</y>
<z>0.02800000086426735</z>
<x>-0.289000004529953</x>
<y>0.8669999837875366</y>
<z>-0.4050000011920929</z>
<x>0.0989999994635582</x>
<y>-0.39399999380111694</y>
<z>-0.9139999747276306</z>
</rotation>
<rmsd>1.283223032951355</rmsd>
<dmax>2.319765090942383</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JJ3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJ3B</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1868 CA ASN B 113 2.874 59.359 26.330 1.00 11.05 C </line>
<line>ATOM 1876 CA ARG B 114 3.340 63.126 26.151 1.00 13.29 C </line>
<line>ATOM 1887 CA CYS B 115 6.968 64.020 25.340 1.00 9.59 C </line>
<line>ATOM 1893 CA LYS B 116 8.502 61.326 23.153 1.00 10.21 C </line>
<line>ATOM 1902 CA GLY B 117 8.717 62.467 19.540 1.00 12.34 C </line>
<line>ATOM 1906 CA THR B 118 7.533 66.001 20.250 1.00 13.95 C </line>
<line>ATOM 1913 CA ASP B 119 9.476 69.255 20.048 1.00 17.91 C </line>
<line>ATOM 1921 CA VAL B 120 10.841 68.976 23.605 1.00 14.44 C </line>
<line>ATOM 1928 CA GLN B 121 13.159 71.942 23.104 1.00 16.11 C </line>
<line>ATOM 1937 CA ALA B 122 9.962 73.952 23.612 1.00 13.42 C </line>
<line>ATOM 1942 CA TRP B 123 10.155 73.220 27.338 1.00 11.84 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.69 16.45 16.57 12.78 13.45 10.14 9.48 6.76 6.28 3.80 </line>
<line>ARG CA 12.24 12.94 13.54 9.85 10.60 7.79 8.55 6.23 3.82 </line>
<line>CYS CA 9.94 10.52 10.30 6.52 7.85 5.49 6.25 3.79 </line>
<line>LYS CA 12.72 12.72 11.59 8.01 8.57 5.59 3.79 </line>
<line>GLY CA 13.36 12.25 11.05 7.96 6.85 3.79 </line>
<line>THR CA 10.45 8.97 8.67 5.57 3.80 </line>
<line>ASP CA 8.33 5.92 5.49 3.82 </line>
<line>VAL CA 5.69 5.05 3.80 </line>
<line>GLN CA 5.35 3.81 </line>
<line>ALA CA 3.80 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 209</line>
<line>ARG CA 250</line>
<line>CYS CA 302</line>
<line>LYS CA 268</line>
<line>GLY CA 193</line>
<line>THR CA 215</line>
<line>ASP CA 198</line>
<line>VAL CA 296</line>
<line>GLN CA 275</line>
<line>ALA CA 234</line>
<line>TRP CA 323</line>
</n14>
</entryChain>
<parallel>
<x>36.92399978637695</x>
<y>-29.520000457763672</y>
<z>104.54299926757812</z>
</parallel>
<rotation>
<x>-0.9940000176429749</x>
<y>-0.054999999701976776</y>
<z>-0.09799999743700027</z>
<x>0.019999999552965164</x>
<y>0.7730000019073486</y>
<z>-0.6340000033378601</z>
<x>0.10999999940395355</x>
<y>-0.6320000290870667</y>
<z>-0.7670000195503235</z>
</rotation>
<rmsd>1.1881309747695923</rmsd>
<dmax>2.0787949562072754</dmax>
</indel>