NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JJIA-3H1BA
confEVID 1JJIA-3H1BA
pdbIDA 1JJI
pdbIDB 3H1B
pdbChainA A
pdbChainB A
identity 0.228100001811981
indelSize 2
alignment <alignment>
<seq1>MLDMPIDPVYYQLAEYFDSLPKFDQFSSAREYREAI----------NRIYEERNRQLSQHERVERVEDRTIKGRNGDIRVRVYQQ---KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPLRDEGEVFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVFD---</seq1>
<seq2>----MAGPEIVKL----------------KKILREKAVPPGTEVPLDVMRKGMEKVAFKAADDIQVEQVTV----AGCAAEWVRAPGCQAG-KAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYRWLLDQ----GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPGGINKMAARYLNGAD-AKHPYASPNFANLKGLPPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAA</seq2>
<ss_1> HHHHHHHHH GGG HHHHHHHH----------HHHHHHHHHHGGGG EEEEEEEEE EEEEEEEEE --- EEEEEEE GGGHHHHHHHHHH EEEEE HHHHHHHHHHHHHH HHHH EEEEEE HHHHHHHHHHHHHH EEEEE HHHH HHHHHHHHHHH GGGGG HHHHGGG EEEEE HHHHHHHHHHHHH EEE GGGG HHHHHHHHHHHHHHH ---</ss_1>
<ss_2>---- HHHH----------------HHHHHHH HHHHHHHHHH EEEEEEE---- EEEEEEE - EEEEE HHHHHHHHHHHHHH EEE HHHHHHHHHHHHH ---- EEEEEE HHHHHHHHHHHHH EEEEE HHHH HHHHHHHHHH - HHHH EEEEE GGHHHHHHHHHHHHH EEE GGGGGGG HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3H1B</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3H1BA</entryIDChain>
<sequence>WLLDQ----GFKPQ</sequence>
<secondary-structure>HHH ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 942 CA TRP A 127 -20.677 16.865 17.612 1.00 16.63 C </line>
<line>ATOM 956 CA LEU A 128 -21.188 13.526 15.928 1.00 16.05 C </line>
<line>ATOM 964 CA LEU A 129 -19.575 11.799 18.995 1.00 16.91 C </line>
<line>ATOM 972 CA ASP A 130 -21.914 13.757 21.263 1.00 15.12 C </line>
<line>ATOM 980 CA GLN A 131 -24.909 12.617 19.331 1.00 16.90 C </line>
<line>ATOM 989 CA GLY A 132 -23.829 9.217 20.676 1.00 17.05 C </line>
<line>ATOM 993 CA PHE A 133 -22.120 7.870 17.521 1.00 16.36 C </line>
<line>ATOM 1004 CA LYS A 134 -19.339 5.566 18.769 1.00 16.72 C </line>
<line>ATOM 1013 CA PRO A 135 -15.873 6.296 17.168 1.00 17.29 C </line>
<line>ATOM 1020 CA GLN A 136 -15.972 2.709 15.781 1.00 15.49 C </line>
</atom-coordinate>
<distance-map>
<line> GLN PRO LYS PHE GLY GLN ASP LEU LEU TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 15.03 11.62 11.44 9.11 8.82 6.24 4.95 5.37 3.77 </line>
<line>LEU CA 12.01 9.06 8.65 5.95 6.93 5.12 5.39 3.87 </line>
<line>LEU CA 10.29 6.88 6.24 4.91 5.25 5.41 3.80 </line>
<line>ASP CA 13.69 10.44 8.94 6.98 4.96 3.74 </line>
<line>GLN CA 13.81 11.24 9.00 5.80 3.81 </line>
<line>GLY CA 11.32 9.17 6.09 3.83 </line>
<line>PHE CA 8.21 6.45 3.82 </line>
<line>LYS CA 5.33 3.89 </line>
<line>PRO CA 3.85 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>TRP CA 330</line>
<line>LEU CA 386</line>
<line>LEU CA 307</line>
<line>ASP CA 225</line>
<line>GLN CA 236</line>
<line>GLY CA 205</line>
<line>PHE CA 282</line>
<line>LYS CA 261</line>
<line>PRO CA 345</line>
<line>GLN CA 301</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JJI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JJIA</entryIDChain>
<sequence>WVAENAEELRIDPS</sequence>
<secondary-structure>HHHH HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1144 CA TRP A 139 49.941 126.710 70.631 1.00 36.97 C </line>
<line>ATOM 1158 CA VAL A 140 51.420 124.181 73.042 1.00 36.38 C </line>
<line>ATOM 1165 CA ALA A 141 54.698 124.153 71.141 1.00 39.04 C </line>
<line>ATOM 1170 CA GLU A 142 54.784 127.976 71.022 1.00 43.52 C </line>
<line>ATOM 1179 CA ASN A 143 53.908 128.463 74.681 1.00 44.01 C </line>
<line>ATOM 1187 CA ALA A 144 56.331 125.928 76.158 1.00 47.01 C </line>
<line>ATOM 1192 CA GLU A 145 57.670 128.265 78.920 1.00 50.18 C </line>
<line>ATOM 1201 CA GLU A 146 54.262 129.562 79.923 1.00 48.61 C </line>
<line>ATOM 1210 CA LEU A 147 52.816 126.045 80.194 1.00 46.96 C </line>
<line>ATOM 1218 CA ARG A 148 55.960 124.813 81.921 1.00 44.91 C </line>
<line>ATOM 1229 CA ILE A 149 56.435 121.904 79.530 1.00 41.25 C </line>
<line>ATOM 1237 CA ASP A 150 59.533 120.476 77.858 1.00 40.25 C </line>
<line>ATOM 1245 CA PRO A 151 59.461 121.799 74.247 1.00 38.39 C </line>
<line>ATOM 1252 CA SER A 152 61.813 118.991 73.233 1.00 36.47 C </line>
</atom-coordinate>
<distance-map>
<line> SER PRO ASP ILE ARG LEU GLU GLU ALA ASN GLU ALA VAL TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 14.40 11.31 13.53 12.02 12.93 10.01 10.64 11.44 8.48 5.93 5.02 5.42 3.79 </line>
<line>VAL CA 11.62 8.47 10.14 8.51 9.99 7.52 9.19 9.50 6.07 5.22 5.46 3.79 </line>
<line>ALA CA 9.04 6.15 9.06 8.86 10.87 9.44 10.32 9.29 5.57 5.63 3.83 </line>
<line>GLU CA 11.62 8.39 11.20 10.58 11.41 9.58 9.06 8.41 5.74 3.79 </line>
<line>ASN CA 12.42 8.69 10.27 8.54 8.36 6.12 5.37 5.67 3.81 </line>
<line>ALA CA 9.31 5.52 6.55 5.25 5.88 5.35 5.63 3.86 </line>
<line>GLU CA 11.64 8.18 8.08 6.51 4.88 5.49 3.78 </line>
<line>GLU CA 14.61 10.93 10.71 7.97 5.42 3.81 </line>
<line>LEU CA 13.39 9.88 9.03 5.54 3.79 </line>
<line>ARG CA 11.98 8.96 6.93 3.80 </line>
<line>ILE CA 8.78 6.09 3.80 </line>
<line>ASP CA 5.37 3.85 </line>
<line>PRO CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>TRP CA 398</line>
<line>VAL CA 450</line>
<line>ALA CA 379</line>
<line>GLU CA 272</line>
<line>ASN CA 291</line>
<line>ALA CA 301</line>
<line>GLU CA 209</line>
<line>GLU CA 232</line>
<line>LEU CA 335</line>
<line>ARG CA 291</line>
<line>ILE CA 362</line>
<line>ASP CA 321</line>
<line>PRO CA 300</line>
<line>SER CA 264</line>
</n14>
</entryChain>
<parallel>
<x>-76.27899932861328</x>
<y>-113.43199920654297</y>
<z>-56.215999603271484</z>
</parallel>
<rotation>
<x>0.36899998784065247</x>
<y>-0.5329999923706055</y>
<z>0.7620000243186951</z>
<x>-0.597000002861023</x>
<y>0.492000013589859</y>
<z>0.6330000162124634</z>
<x>-0.7120000123977661</x>
<y>-0.6880000233650208</y>
<z>-0.13699999451637268</z>
</rotation>
<rmsd>2.256412982940674</rmsd>
<dmax>4.4416728019714355</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3H1B</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3H1BA</entryIDChain>
<sequence>LNGAD-AKHPY</sequence>
<secondary-structure>H - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1527 CA LEU A 207 -3.136 30.575 4.610 1.00 12.16 C </line>
<line>ATOM 1535 CA ASN A 208 -3.481 34.382 4.740 1.00 13.83 C </line>
<line>ATOM 1543 CA GLY A 209 0.209 34.659 5.943 1.00 14.22 C </line>
<line>ATOM 1547 CA ALA A 210 0.266 31.354 7.859 1.00 17.59 C </line>
<line>ATOM 1552 CA ASP A 211 3.021 28.745 7.657 1.00 21.75 C </line>
<line>ATOM 1560 CA ALA A 212 2.124 26.702 4.567 1.00 17.52 C </line>
<line>ATOM 1565 CA LYS A 213 3.859 23.802 6.470 1.00 14.09 C </line>
<line>ATOM 1574 CA HIS A 214 1.570 24.127 9.447 1.00 12.94 C </line>
<line>ATOM 1584 CA PRO A 215 0.509 20.496 10.233 1.00 9.74 C </line>
<line>ATOM 1591 CA TYR A 216 -3.163 21.441 10.147 1.00 8.20 C </line>
</atom-coordinate>
<distance-map>
<line> TYR PRO HIS LYS ALA ASP ALA GLY ASN LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 10.68 12.10 9.33 9.91 6.53 7.11 4.77 5.44 3.82 </line>
<line>ASN CA 14.03 15.46 12.36 12.99 9.51 9.09 5.74 3.89 </line>
<line>GLY CA 14.27 14.80 11.18 11.47 8.30 6.77 3.82 </line>
<line>ALA CA 10.74 11.12 7.51 8.48 5.99 3.80 </line>
<line>ASP CA 9.89 9.00 5.16 5.15 3.81 </line>
<line>ALA CA 9.31 8.56 5.55 3.88 </line>
<line>LYS CA 8.27 6.03 3.77 </line>
<line>HIS CA 5.49 3.86 </line>
<line>PRO CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LEU CA 338</line>
<line>ASN CA 243</line>
<line>GLY CA 184</line>
<line>ALA CA 230</line>
<line>ASP CA 226</line>
<line>ALA CA 299</line>
<line>LYS CA 285</line>
<line>HIS CA 312</line>
<line>PRO CA 366</line>
<line>TYR CA 419</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JJI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JJIA</entryIDChain>
<sequence>FSREEDKFNPL</sequence>
<secondary-structure> GGGGG HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1801 CA PHE A 223 31.739 115.503 55.955 1.00 37.29 C </line>
<line>ATOM 1812 CA SER A 224 29.740 118.220 54.158 1.00 44.06 C </line>
<line>ATOM 1818 CA ARG A 225 30.525 116.594 50.789 1.00 49.08 C </line>
<line>ATOM 1829 CA GLU A 226 31.079 112.892 49.933 1.00 51.90 C </line>
<line>ATOM 1838 CA GLU A 227 34.327 113.610 48.066 1.00 46.83 C </line>
<line>ATOM 1847 CA ASP A 228 35.756 115.146 51.258 1.00 43.66 C </line>
<line>ATOM 1855 CA LYS A 229 36.248 111.523 52.321 1.00 42.01 C </line>
<line>ATOM 1864 CA PHE A 230 39.252 111.312 50.008 1.00 37.55 C </line>
<line>ATOM 1875 CA ASN A 231 40.948 114.337 51.514 1.00 34.15 C </line>
<line>ATOM 1883 CA PRO A 232 44.389 113.307 52.875 1.00 34.02 C </line>
<line>ATOM 1890 CA LEU A 233 43.578 115.044 56.170 1.00 32.58 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PRO ASN PHE LYS ASP GLU GLU ARG SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 11.85 13.20 10.29 10.46 7.03 6.19 8.52 6.60 5.42 3.82 </line>
<line>SER CA 14.34 15.50 12.15 12.47 9.52 7.35 8.91 6.93 3.82 </line>
<line>ARG CA 14.20 14.40 10.69 10.23 7.80 5.45 5.55 3.84 </line>
<line>GLU CA 14.13 13.64 10.10 8.32 5.86 5.36 3.81 </line>
<line>GLU CA 12.38 11.16 7.50 5.77 5.11 3.82 </line>
<line>ASP CA 9.24 8.97 5.26 5.34 3.81 </line>
<line>LYS CA 9.00 8.35 5.54 3.80 </line>
<line>PHE CA 8.40 6.21 3.78 </line>
<line>ASN CA 5.39 3.84 </line>
<line>PRO CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PHE CA 344</line>
<line>SER CA 257</line>
<line>ARG CA 210</line>
<line>GLU CA 211</line>
<line>GLU CA 200</line>
<line>ASP CA 272</line>
<line>LYS CA 318</line>
<line>PHE CA 262</line>
<line>ASN CA 311</line>
<line>PRO CA 348</line>
<line>LEU CA 431</line>
</n14>
</entryChain>
<parallel>
<x>-33.678001403808594</x>
<y>-84.95600128173828</y>
<z>-45.180999755859375</z>
</parallel>
<rotation>
<x>0.006000000052154064</x>
<y>-0.921999990940094</y>
<z>0.38600000739097595</z>
<x>-0.6679999828338623</x>
<y>0.2840000092983246</y>
<z>0.6880000233650208</z>
<x>-0.7440000176429749</x>
<y>-0.2619999945163727</y>
<z>-0.6140000224113464</z>
</rotation>
<rmsd>1.7420680522918701</rmsd>
<dmax>3.642685890197754</dmax>
</indel>