NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JJWB-2Z3AH
confEVID 1JJWB-2Z3AH
pdbIDA 1JJW
pdbIDB 2Z3A
pdbChainA B
pdbChainB H
identity 0.573899984359741
indelSize 3
alignment <alignment>
<seq1>-----TTIVSVRRNGQVVVGGDGQVSLG-NTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENT--ELSAHEIVEKSLRIAGDICVFTNTNFTIEELP</seq1>
<seq2>SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEP-DDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE</seq2>
<ss_1>----- EEEEEE EEEEEE EEE - EEEEE EEEEEE HHHHHHHHHHHHHHHHH HHHHHHHHHHHHHH GGG EEEEEE EEEEE EEE EEEEE HHHHHHHHHHHHHH -- HHHHHHHHHHHHH EEEEE </ss_1>
<ss_2> EEEEEEE EEEEEE EEE EEEEE EEEEE HHHHHHHHHHHHHHHHH HHHHHHHHHHHHHH EEEEE EEEEEE EEE - EEEEE HHHHHHHHHHHHHHH HHHHHHHHHHHHHHH EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1JJW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJWB</entryIDChain>
<sequence>QVSLG-NTVMK</sequence>
<secondary-structure> EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1406 CA GLN B 19 9.314 26.088 77.696 1.00 23.77 C </line>
<line>ATOM 1415 CA VAL B 20 10.864 22.621 77.534 1.00 25.77 C </line>
<line>ATOM 1422 CA SER B 21 8.215 19.911 77.337 1.00 26.64 C </line>
<line>ATOM 1428 CA LEU B 22 8.133 16.146 77.690 1.00 29.93 C </line>
<line>ATOM 1436 CA GLY B 23 4.958 14.676 76.262 1.00 30.09 C </line>
<line>ATOM 1440 CA ASN B 24 2.129 16.877 77.531 1.00 27.16 C </line>
<line>ATOM 1448 CA THR B 25 3.911 18.321 80.556 1.00 26.84 C </line>
<line>ATOM 1455 CA VAL B 26 6.445 21.039 81.289 1.00 27.54 C </line>
<line>ATOM 1462 CA MET B 27 9.961 20.052 82.376 1.00 29.94 C </line>
<line>ATOM 1470 CA LYS B 28 11.245 23.632 82.531 1.00 28.31 C </line>
</atom-coordinate>
<distance-map>
<line> LYS MET VAL THR ASN GLY LEU SER VAL GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.76 7.67 6.83 9.88 11.68 12.30 10.01 6.28 3.80 </line>
<line>VAL CA 5.11 5.56 6.01 8.72 10.45 9.98 7.03 3.79 </line>
<line>SER CA 7.07 5.33 4.47 5.60 6.80 6.26 3.78 </line>
<line>LEU CA 9.44 6.37 6.30 5.55 6.05 3.78 </line>
<line>GLY CA 12.61 9.56 8.24 5.73 3.80 </line>
<line>ASN CA 12.40 9.74 7.08 3.80 </line>
<line>THR CA 9.27 6.55 3.79 </line>
<line>VAL CA 5.60 3.81 </line>
<line>MET CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLN CA 317</line>
<line>VAL CA 288</line>
<line>SER CA 218</line>
<line>LEU CA 151</line>
<line>GLY CA 106</line>
<line>ASN CA 117</line>
<line>THR CA 127</line>
<line>VAL CA 174</line>
<line>MET CA 165</line>
<line>LYS CA 193</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2Z3A</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>2Z3AH</entryIDChain>
<sequence>QVTFGQAVVMK</sequence>
<secondary-structure> EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 9689 CA GLN H 24 15.477 80.878 17.874 1.00 27.87 C </line>
<line>ATOM 9698 CA VAL H 25 16.858 84.329 17.436 1.00 22.44 C </line>
<line>ATOM 9705 CA THR H 26 14.073 86.796 16.890 1.00 24.63 C </line>
<line>ATOM 9712 CA PHE H 27 14.960 90.422 16.436 1.00 32.24 C </line>
<line>ATOM 9723 CA GLY H 28 12.035 92.756 16.365 1.00 40.31 C </line>
<line>ATOM 9727 CA GLN H 29 8.334 92.033 16.345 1.00 47.64 C </line>
<line>ATOM 9736 CA ALA H 30 8.788 89.209 13.892 1.00 39.30 C </line>
<line>ATOM 9741 CA VAL H 31 12.160 88.909 12.236 1.00 36.45 C </line>
<line>ATOM 9748 CA VAL H 32 14.073 85.653 12.586 1.00 33.72 C </line>
<line>ATOM 9755 CA MET H 33 17.873 85.885 12.291 1.00 39.66 C </line>
<line>ATOM 9763 CA LYS H 34 18.629 82.232 12.952 1.00 45.72 C </line>
</atom-coordinate>
<distance-map>
<line> LYS MET VAL VAL ALA GLN GLY PHE THR VAL GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 6.00 7.87 7.26 10.36 11.40 13.33 12.46 9.67 6.16 3.74 </line>
<line>VAL CA 5.26 5.47 5.75 8.37 10.07 11.54 9.77 6.46 3.76 </line>
<line>THR CA 7.56 6.03 4.45 5.46 6.54 7.79 6.32 3.76 </line>
<line>PHE CA 9.63 6.80 6.19 5.27 6.79 6.82 3.74 </line>
<line>GLY CA 12.88 9.89 8.30 5.64 5.41 3.77 </line>
<line>GLN CA 14.61 12.05 9.37 6.43 3.77 </line>
<line>ALA CA 12.10 9.81 6.50 3.77 </line>
<line>VAL CA 9.32 6.46 3.79 </line>
<line>VAL CA 5.71 3.82 </line>
<line>MET CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLN CA 344</line>
<line>VAL CA 306</line>
<line>THR CA 266</line>
<line>PHE CA 210</line>
<line>GLY CA 150</line>
<line>GLN CA 149</line>
<line>ALA CA 176</line>
<line>VAL CA 170</line>
<line>VAL CA 222</line>
<line>MET CA 202</line>
<line>LYS CA 221</line>
</n14>
</entryChain>
<parallel>
<x>-6.807000160217285</x>
<y>-67.90899658203125</y>
<z>62.77299880981445</z>
</parallel>
<rotation>
<x>0.9259999990463257</x>
<y>-0.05900000035762787</y>
<z>0.37299999594688416</z>
<x>-0.02500000037252903</x>
<y>-0.9950000047683716</y>
<z>-0.09399999678134918</z>
<x>0.37700000405311584</x>
<y>0.07800000160932541</y>
<z>-0.9229999780654907</z>
</rotation>
<rmsd>0.6037660241127014</rmsd>
<dmax>1.029636025428772</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1JJW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJWB</entryIDChain>
<sequence>LVENT--ELSAH</sequence>
<secondary-structure>HHHH -- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2280 CA LEU B 137 3.433 44.039 62.335 1.00 30.71 C </line>
<line>ATOM 2288 CA VAL B 138 6.230 44.585 59.851 1.00 36.10 C </line>
<line>ATOM 2295 CA GLU B 139 3.796 45.219 57.010 1.00 35.77 C </line>
<line>ATOM 2300 CA ASN B 140 1.425 47.449 58.996 1.00 35.85 C </line>
<line>ATOM 2308 CA THR B 141 3.337 49.286 61.749 1.00 36.33 C </line>
<line>ATOM 2315 CA GLU B 142 6.561 51.199 62.366 1.00 39.22 C </line>
<line>ATOM 2320 CA LEU B 143 7.417 49.181 65.482 1.00 38.37 C </line>
<line>ATOM 2328 CA SER B 144 11.061 48.237 66.097 1.00 37.88 C </line>
<line>ATOM 2334 CA ALA B 145 12.449 44.753 65.425 1.00 34.62 C </line>
<line>ATOM 2339 CA HIS B 146 12.729 44.242 69.197 1.00 34.49 C </line>
</atom-coordinate>
<distance-map>
<line> HIS ALA SER LEU GLU THR ASN GLU VAL LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.56 9.56 9.48 7.23 7.81 5.28 5.18 5.47 3.78 </line>
<line>VAL CA 11.39 8.35 8.70 7.36 7.08 5.84 5.66 3.79 </line>
<line>GLU CA 15.14 12.08 12.02 10.03 8.49 6.26 3.81 </line>
<line>ASN CA 15.56 13.04 12.00 9.00 7.20 3.82 </line>
<line>THR CA 13.00 10.82 8.93 5.53 3.80 </line>
<line>GLU CA 11.54 9.25 6.55 3.81 </line>
<line>LEU CA 8.15 6.70 3.81 </line>
<line>SER CA 5.32 3.81 </line>
<line>ALA CA 3.82 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>LEU CA 258</line>
<line>VAL CA 277</line>
<line>GLU CA 196</line>
<line>ASN CA 149</line>
<line>THR CA 164</line>
<line>GLU CA 163</line>
<line>LEU CA 217</line>
<line>SER CA 260</line>
<line>ALA CA 358</line>
<line>HIS CA 332</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2Z3A</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>2Z3AH</entryIDChain>
<sequence>LKKHAGESMSAS</sequence>
<secondary-structure>HHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 10586 CA LEU H 142 3.216 65.990 31.913 1.00 24.07 C </line>
<line>ATOM 10594 CA LYS H 143 5.016 65.501 35.183 1.00 25.16 C </line>
<line>ATOM 10603 CA LYS H 144 1.814 65.295 37.136 1.00 24.23 C </line>
<line>ATOM 10612 CA HIS H 145 -0.119 63.054 34.770 1.00 22.83 C </line>
<line>ATOM 10622 CA ALA H 146 2.585 61.057 33.042 1.00 27.28 C </line>
<line>ATOM 10627 CA GLY H 147 5.657 61.284 35.252 1.00 37.25 C </line>
<line>ATOM 10631 CA GLU H 148 6.004 57.613 36.069 1.00 43.68 C </line>
<line>ATOM 10640 CA SER H 149 5.844 57.084 32.309 1.00 37.55 C </line>
<line>ATOM 10646 CA MET H 150 8.292 59.640 30.921 1.00 34.67 C </line>
<line>ATOM 10654 CA SER H 151 11.723 60.771 32.195 1.00 32.13 C </line>
<line>ATOM 10660 CA ALA H 152 13.037 64.200 33.066 1.00 29.82 C </line>
<line>ATOM 10665 CA SER H 153 14.854 64.450 29.751 1.00 26.80 C </line>
</atom-coordinate>
<distance-map>
<line> SER ALA SER MET SER GLU GLY ALA HIS LYS LYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.94 10.05 9.98 8.19 9.29 9.76 6.27 5.10 5.28 5.45 3.76 </line>
<line>LYS CA 11.29 8.40 8.73 7.95 8.93 8.00 4.27 5.50 5.70 3.76 </line>
<line>LYS CA 15.01 11.99 11.96 10.61 10.34 8.82 5.87 5.94 3.79 </line>
<line>HIS CA 15.85 13.32 12.33 9.86 8.79 8.29 6.06 3.78 </line>
<line>ALA CA 13.15 10.91 9.18 6.25 5.19 5.72 3.79 </line>
<line>GLY CA 11.17 8.23 6.81 5.33 5.13 3.78 </line>
<line>GLU CA 12.84 10.09 7.60 5.99 3.80 </line>
<line>SER CA 11.92 10.15 6.94 3.80 </line>
<line>MET CA 8.22 6.92 3.83 </line>
<line>SER CA 5.41 3.77 </line>
<line>ALA CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>LEU CA 274</line>
<line>LYS CA 289</line>
<line>LYS CA 211</line>
<line>HIS CA 165</line>
<line>ALA CA 185</line>
<line>GLY CA 222</line>
<line>GLU CA 161</line>
<line>SER CA 156</line>
<line>MET CA 224</line>
<line>SER CA 268</line>
<line>ALA CA 380</line>
<line>SER CA 350</line>
</n14>
</entryChain>
<parallel>
<x>0.6110000014305115</x>
<y>-14.899999618530273</y>
<z>28.302000045776367</z>
</parallel>
<rotation>
<x>0.9089999794960022</x>
<y>-0.125</y>
<z>0.3970000147819519</z>
<x>-0.10499999672174454</x>
<y>-0.9919999837875366</y>
<z>-0.07199999690055847</z>
<x>0.40299999713897705</x>
<y>0.024000000208616257</y>
<z>-0.9150000214576721</z>
</rotation>
<rmsd>0.7660959959030151</rmsd>
<dmax>1.704725980758667</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2Z3A</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>2Z3AH</entryIDChain>
<sequence>EVIEP-DDGIL</sequence>
<secondary-structure>EEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 10416 CA GLU H 117 15.487 87.069 43.307 1.00 24.70 C </line>
<line>ATOM 10425 CA VAL H 118 16.468 83.536 44.076 1.00 22.67 C </line>
<line>ATOM 10432 CA ILE H 119 13.525 81.224 43.763 1.00 24.30 C </line>
<line>ATOM 10440 CA GLU H 120 13.406 77.486 44.322 1.00 31.59 C </line>
<line>ATOM 10449 CA PRO H 121 10.391 75.712 42.798 1.00 35.60 C </line>
<line>ATOM 10456 CA ASP H 122 8.711 73.482 45.327 1.00 41.67 C </line>
<line>ATOM 10464 CA ASP H 123 7.374 71.830 42.189 1.00 36.56 C </line>
<line>ATOM 10472 CA GLY H 124 10.686 70.615 40.748 1.00 24.19 C </line>
<line>ATOM 10476 CA ILE H 125 10.245 72.638 37.566 1.00 14.96 C </line>
<line>ATOM 10484 CA LEU H 126 11.323 75.997 36.268 1.00 12.69 C </line>
</atom-coordinate>
<distance-map>
<line> LEU ILE GLY ASP ASP PRO GLU ILE VAL GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 13.77 16.39 17.33 17.30 15.32 12.46 9.86 6.18 3.75 </line>
<line>VAL CA 12.01 14.14 14.54 14.94 12.76 9.99 6.79 3.76 </line>
<line>ILE CA 9.40 11.09 11.39 11.34 9.25 6.41 3.78 </line>
<line>GLU CA 8.45 8.90 8.21 8.54 6.25 3.82 </line>
<line>PRO CA 6.60 6.07 5.50 4.95 3.77 </line>
<line>ASP CA 9.76 7.96 5.75 3.79 </line>
<line>ASP CA 8.25 5.50 3.81 </line>
<line>GLY CA 7.03 3.80 </line>
<line>ILE CA 3.76 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLU CA 282</line>
<line>VAL CA 314</line>
<line>ILE CA 291</line>
<line>GLU CA 290</line>
<line>PRO CA 277</line>
<line>ASP CA 195</line>
<line>ASP CA 254</line>
<line>GLY CA 348</line>
<line>ILE CA 430</line>
<line>LEU CA 439</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JJW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JJWB</entryIDChain>
<sequence>DVVQPEEDQIL</sequence>
<secondary-structure>EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2099 CA ASP B 111 18.619 22.816 53.802 1.00 35.09 C </line>
<line>ATOM 2107 CA VAL B 112 19.633 26.366 54.642 1.00 30.55 C </line>
<line>ATOM 2114 CA VAL B 113 16.757 28.815 54.306 1.00 29.80 C </line>
<line>ATOM 2121 CA GLN B 114 17.022 32.561 53.716 1.00 30.76 C </line>
<line>ATOM 2130 CA PRO B 115 14.101 34.864 54.657 1.00 30.20 C </line>
<line>ATOM 2137 CA GLU B 116 11.652 36.518 52.262 1.00 32.35 C </line>
<line>ATOM 2146 CA GLU B 117 12.152 40.218 51.621 1.00 35.39 C </line>
<line>ATOM 2151 CA ASP B 118 10.593 41.060 55.019 1.00 35.11 C </line>
<line>ATOM 2159 CA GLN B 119 13.665 39.495 56.689 1.00 34.37 C </line>
<line>ATOM 2168 CA ILE B 120 11.657 37.514 59.304 1.00 26.43 C </line>
<line>ATOM 2176 CA LEU B 121 12.459 33.912 60.257 1.00 26.69 C </line>
</atom-coordinate>
<distance-map>
<line> LEU ILE GLN ASP GLU GLU PRO GLN VAL VAL ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 14.24 17.17 17.64 19.97 18.69 15.45 12.90 9.88 6.30 3.79 </line>
<line>VAL CA 11.83 14.48 14.57 17.26 16.03 13.13 10.14 6.79 3.79 </line>
<line>VAL CA 8.94 11.25 11.37 13.73 12.59 9.46 6.62 3.80 </line>
<line>GLN CA 8.09 9.19 8.26 10.74 9.31 6.83 3.84 </line>
<line>PRO CA 5.91 5.88 5.08 7.13 6.46 3.80 </line>
<line>GLU CA 8.45 7.11 5.70 5.42 3.79 </line>
<line>GLU CA 10.70 8.16 5.34 3.83 </line>
<line>ASP CA 9.06 5.66 3.83 </line>
<line>GLN CA 6.73 3.85 </line>
<line>ILE CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 263</line>
<line>VAL CA 307</line>
<line>VAL CA 307</line>
<line>GLN CA 293</line>
<line>PRO CA 295</line>
<line>GLU CA 202</line>
<line>GLU CA 181</line>
<line>ASP CA 282</line>
<line>GLN CA 338</line>
<line>ILE CA 416</line>
<line>LEU CA 439</line>
</n14>
</entryChain>
<parallel>
<x>-3.312000036239624</x>
<y>44.345001220703125</y>
<z>-10.989999771118164</z>
</parallel>
<rotation>
<x>0.9419999718666077</x>
<y>-0.07500000298023224</y>
<z>0.328000009059906</z>
<x>-0.11699999868869781</x>
<y>-0.9869999885559082</y>
<z>0.10899999737739563</z>
<x>0.3160000145435333</x>
<y>-0.14100000262260437</y>
<z>-0.9380000233650208</z>
</rotation>
<rmsd>1.302935004234314</rmsd>
<dmax>2.5049610137939453</dmax>
</indel>