NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JKAA-2G4NF
confEVID 1JKAA-2G4NF
pdbIDA 1JKA
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWDSGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JKA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JKAA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 342 CA THR A 43 3.488 8.440 25.441 1.00 14.26 C </line>
<line>ATOM 349 CA ASN A 44 5.076 5.028 25.269 1.00 15.66 C </line>
<line>ATOM 357 CA TYR A 45 3.865 2.072 27.300 1.00 13.87 C </line>
<line>ATOM 369 CA ASN A 46 6.474 -0.501 28.347 1.00 14.17 C </line>
<line>ATOM 377 CA ALA A 47 4.345 -3.653 28.328 1.00 14.56 C </line>
<line>ATOM 382 CA GLY A 48 7.166 -5.690 29.858 1.00 14.71 C </line>
<line>ATOM 386 CA ASP A 49 7.645 -3.755 33.073 1.00 15.50 C </line>
<line>ATOM 394 CA ARG A 50 4.260 -1.997 32.983 1.00 13.22 C </line>
<line>ATOM 405 CA SER A 51 5.541 1.582 33.154 1.00 9.78 C </line>
<line>ATOM 411 CA THR A 52 4.886 4.508 30.797 1.00 6.13 C </line>
<line>ATOM 418 CA ASP A 53 7.196 7.242 29.454 1.00 7.11 C </line>
<line>ATOM 426 CA TYR A 54 5.530 10.663 29.285 1.00 5.10 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.89 5.59 6.79 10.52 12.90 14.97 15.25 12.46 9.86 6.64 3.77 </line>
<line>ASN CA 6.93 5.19 5.56 8.62 10.47 12.03 11.84 9.23 6.48 3.79 </line>
<line>TYR CA 8.97 6.52 4.38 6.11 7.00 9.03 8.81 5.84 3.81 </line>
<line>ASN CA 11.24 7.85 5.80 5.32 5.35 5.86 5.45 3.80 </line>
<line>ALA CA 14.40 11.32 8.54 7.22 4.94 5.78 3.80 </line>
<line>GLY CA 16.44 12.94 10.49 8.15 5.64 3.78 </line>
<line>ASP CA 15.06 11.59 9.00 5.74 3.82 </line>
<line>ARG CA 13.25 10.32 6.89 3.81 </line>
<line>SER CA 9.87 6.96 3.81 </line>
<line>THR CA 6.37 3.82 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 292</line>
<line>ASN CA 271</line>
<line>TYR CA 226</line>
<line>ASN CA 205</line>
<line>ALA CA 142</line>
<line>GLY CA 124</line>
<line>ASP CA 161</line>
<line>ARG CA 194</line>
<line>SER CA 262</line>
<line>THR CA 324</line>
<line>ASP CA 411</line>
<line>TYR CA 435</line>
</n14>
</entryChain>
<parallel>
<x>54.137001037597656</x>
<y>13.560999870300293</y>
<z>89.05000305175781</z>
</parallel>
<rotation>
<x>-0.31200000643730164</x>
<y>0.4480000138282776</y>
<z>0.8379999995231628</z>
<x>-0.8259999752044678</x>
<y>0.30799999833106995</y>
<z>-0.47200000286102295</z>
<x>-0.4699999988079071</x>
<y>-0.8389999866485596</y>
<z>0.27399998903274536</z>
</rotation>
<rmsd>0.7001109719276428</rmsd>
<dmax>1.2982909679412842</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JKA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JKAA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 753 CA ARG A 98 15.746 16.353 38.886 1.00 6.47 C </line>
<line>ATOM 764 CA VAL A 99 16.623 13.276 36.795 1.00 7.09 C </line>
<line>ATOM 771 CA VAL A 100 20.083 14.641 35.869 1.00 8.11 C </line>
<line>ATOM 778 CA ARG A 101 20.921 15.507 39.473 1.00 12.13 C </line>
<line>ATOM 789 CA ASP A 102 21.417 11.753 39.930 1.00 12.73 C </line>
<line>ATOM 797 CA PRO A 103 25.036 10.597 39.131 1.00 15.06 C </line>
<line>ATOM 804 CA GLN A 104 24.164 9.149 35.705 1.00 15.49 C </line>
<line>ATOM 813 CA GLY A 105 23.002 12.500 34.404 1.00 10.11 C </line>
<line>ATOM 817 CA ILE A 106 21.689 12.498 30.825 1.00 11.09 C </line>
<line>ATOM 825 CA ARG A 107 22.912 8.896 30.365 1.00 13.50 C </line>
<line>ATOM 836 CA ALA A 108 19.667 7.946 32.173 1.00 13.82 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.45 13.40 10.73 9.36 11.53 10.93 7.38 5.28 5.55 3.82 </line>
<line>VAL CA 7.68 10.00 7.87 6.86 8.67 9.13 5.93 5.53 3.83 </line>
<line>VAL CA 7.66 8.44 5.71 3.91 6.84 7.18 5.16 3.80 </line>
<line>ARG CA 10.58 11.43 9.19 6.25 8.07 6.42 3.81 </line>
<line>ASP CA 8.82 10.09 9.14 5.80 5.67 3.88 </line>
<line>PRO CA 9.18 9.18 9.15 5.49 3.82 </line>
<line>GLN CA 5.84 5.49 6.42 3.78 </line>
<line>GLY CA 6.07 5.41 3.81 </line>
<line>ILE CA 5.16 3.83 </line>
<line>ARG CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 330</line>
<line>VAL CA 380</line>
<line>VAL CA 337</line>
<line>ARG CA 239</line>
<line>ASP CA 222</line>
<line>PRO CA 174</line>
<line>GLN CA 223</line>
<line>GLY CA 301</line>
<line>ILE CA 389</line>
<line>ARG CA 312</line>
<line>ALA CA 343</line>
</n14>
</entryChain>
<parallel>
<x>19.97599983215332</x>
<y>3.427000045776367</y>
<z>90.54000091552734</z>
</parallel>
<rotation>
<x>-0.23199999332427979</x>
<y>0.21899999678134918</y>
<z>0.9480000138282776</z>
<x>-0.8949999809265137</x>
<y>0.33399999141693115</y>
<z>-0.29600000381469727</z>
<x>-0.38100001215934753</x>
<y>-0.9169999957084656</y>
<z>0.11900000274181366</z>
</rotation>
<rmsd>1.0364500284194946</rmsd>
<dmax>2.2977681159973145</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JKA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JKAA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 892 CA ASN A 114 21.889 5.641 21.183 1.00 13.53 C </line>
<line>ATOM 900 CA ARG A 115 21.502 8.805 19.108 1.00 12.28 C </line>
<line>ATOM 911 CA CYS A 116 23.524 11.534 20.770 1.00 9.79 C </line>
<line>ATOM 917 CA GLN A 117 26.490 10.324 22.824 1.00 14.82 C </line>
<line>ATOM 926 CA ASN A 118 29.873 10.675 21.094 1.00 19.83 C </line>
<line>ATOM 934 CA ARG A 119 28.230 12.489 18.201 1.00 20.88 C </line>
<line>ATOM 945 CA ASP A 120 28.205 15.921 16.594 1.00 21.10 C </line>
<line>ATOM 953 CA VAL A 121 24.977 17.355 18.104 1.00 15.97 C </line>
<line>ATOM 960 CA ARG A 122 25.607 20.976 17.064 1.00 21.29 C </line>
<line>ATOM 971 CA GLN A 123 23.132 20.743 14.192 1.00 15.98 C </line>
<line>ATOM 980 CA TYR A 124 20.210 20.717 16.639 1.00 13.87 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.84 16.69 16.31 12.50 12.91 9.80 9.44 6.77 6.13 3.80 </line>
<line>ARG CA 12.23 13.01 13.01 9.28 10.09 7.72 8.80 6.40 3.78 </line>
<line>CYS CA 10.60 11.32 10.35 6.57 7.65 5.45 6.42 3.81 </line>
<line>GLN CA 13.63 13.94 12.14 8.60 8.55 5.39 3.82 </line>
<line>ASN CA 14.63 13.94 11.86 8.81 7.11 3.79 </line>
<line>ARG CA 11.60 10.50 8.96 5.85 3.79 </line>
<line>ASP CA 9.32 7.40 5.70 3.84 </line>
<line>VAL CA 6.01 5.49 3.82 </line>
<line>ARG CA 5.42 3.80 </line>
<line>GLN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 220</line>
<line>ARG CA 266</line>
<line>CYS CA 301</line>
<line>GLN CA 275</line>
<line>ASN CA 189</line>
<line>ARG CA 211</line>
<line>ASP CA 198</line>
<line>VAL CA 285</line>
<line>ARG CA 242</line>
<line>GLN CA 235</line>
<line>TYR CA 338</line>
</n14>
</entryChain>
<parallel>
<x>19.649999618530273</x>
<y>22.885000228881836</y>
<z>108.35900115966797</z>
</parallel>
<rotation>
<x>-0.40299999713897705</x>
<y>0.44999998807907104</y>
<z>0.796999990940094</z>
<x>-0.7200000286102295</x>
<y>0.38199999928474426</y>
<z>-0.5799999833106995</z>
<x>-0.5649999976158142</x>
<y>-0.8069999814033508</y>
<z>0.17000000178813934</z>
</rotation>
<rmsd>1.3296129703521729</rmsd>
<dmax>2.689366102218628</dmax>
</indel>