NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JKCA-2G4NF
confEVID 1JKCA-2G4NF
pdbIDA 1JKC
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.335900008678436
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAFVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JKC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JKCA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 3.354 8.397 25.316 1.00 14.87 C </line>
<line>ATOM 350 CA ASN A 44 4.738 4.925 25.128 1.00 16.88 C </line>
<line>ATOM 358 CA TYR A 45 3.569 1.965 27.176 1.00 15.08 C </line>
<line>ATOM 370 CA ASN A 46 6.146 -0.656 28.186 1.00 13.86 C </line>
<line>ATOM 378 CA ALA A 47 4.153 -3.884 28.370 1.00 13.44 C </line>
<line>ATOM 383 CA GLY A 48 7.183 -5.623 29.883 1.00 14.56 C </line>
<line>ATOM 387 CA ASP A 49 7.258 -3.805 33.192 1.00 15.08 C </line>
<line>ATOM 395 CA ARG A 50 3.905 -2.043 32.973 1.00 16.68 C </line>
<line>ATOM 406 CA SER A 51 5.371 1.481 32.993 1.00 11.89 C </line>
<line>ATOM 412 CA THR A 52 4.731 4.361 30.577 1.00 8.14 C </line>
<line>ATOM 419 CA ASP A 53 7.047 7.040 29.185 1.00 7.53 C </line>
<line>ATOM 427 CA TYR A 54 5.507 10.521 29.115 1.00 7.07 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.86 5.52 6.77 10.53 12.96 15.04 15.23 12.68 9.90 6.70 3.74 </line>
<line>ASN CA 6.91 5.12 5.48 8.61 10.53 12.15 11.83 9.40 6.52 3.78 </line>
<line>TYR CA 8.98 6.47 4.32 6.11 7.06 9.12 8.83 6.00 3.81 </line>
<line>ASN CA 11.23 7.81 5.73 5.32 5.46 6.02 5.35 3.80 </line>
<line>ALA CA 14.49 11.33 8.55 7.19 4.96 5.74 3.81 </line>
<line>GLY CA 16.25 12.68 10.30 7.96 5.75 3.78 </line>
<line>ASP CA 15.00 11.56 8.94 5.62 3.79 </line>
<line>ARG CA 13.24 10.33 6.89 3.82 </line>
<line>SER CA 9.84 6.94 3.81 </line>
<line>THR CA 6.38 3.81 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 287</line>
<line>ASN CA 258</line>
<line>TYR CA 226</line>
<line>ASN CA 204</line>
<line>ALA CA 143</line>
<line>GLY CA 131</line>
<line>ASP CA 167</line>
<line>ARG CA 196</line>
<line>SER CA 259</line>
<line>THR CA 317</line>
<line>ASP CA 406</line>
<line>TYR CA 429</line>
</n14>
</entryChain>
<parallel>
<x>54.382999420166016</x>
<y>13.677000045776367</y>
<z>89.16300201416016</z>
</parallel>
<rotation>
<x>-0.3330000042915344</x>
<y>0.4390000104904175</y>
<z>0.8349999785423279</z>
<x>-0.824999988079071</x>
<y>0.2930000126361847</y>
<z>-0.4830000102519989</z>
<x>-0.4569999873638153</x>
<y>-0.8489999771118164</y>
<z>0.26499998569488525</z>
</rotation>
<rmsd>0.7019270062446594</rmsd>
<dmax>1.2867070436477661</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JKC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JKCA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 754 CA ARG A 98 15.931 16.087 38.598 1.00 9.34 C </line>
<line>ATOM 765 CA VAL A 99 16.770 13.049 36.433 1.00 9.76 C </line>
<line>ATOM 772 CA VAL A 100 20.201 14.358 35.495 1.00 11.77 C </line>
<line>ATOM 779 CA ARG A 101 21.069 15.151 39.120 1.00 17.04 C </line>
<line>ATOM 790 CA ASP A 102 21.602 11.416 39.575 1.00 21.68 C </line>
<line>ATOM 798 CA PRO A 103 25.201 10.173 39.035 1.00 23.96 C </line>
<line>ATOM 805 CA GLN A 104 24.597 9.065 35.422 1.00 23.88 C </line>
<line>ATOM 814 CA GLY A 105 23.564 12.539 34.382 1.00 19.23 C </line>
<line>ATOM 818 CA ILE A 106 22.330 12.677 30.772 1.00 19.34 C </line>
<line>ATOM 826 CA ARG A 107 23.372 9.007 30.415 1.00 20.03 C </line>
<line>ATOM 837 CA ALA A 108 20.187 8.123 32.292 1.00 19.07 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.01 13.13 10.67 9.41 11.60 11.00 7.41 5.25 5.55 3.82 </line>
<line>VAL CA 7.29 9.81 7.94 7.12 8.84 9.28 5.99 5.49 3.79 </line>
<line>VAL CA 7.01 8.03 5.45 3.98 6.88 7.42 5.22 3.81 </line>
<line>ARG CA 9.84 10.90 8.80 5.96 7.95 6.47 3.80 </line>
<line>ASP CA 8.12 9.64 8.92 5.66 5.63 3.85 </line>
<line>PRO CA 8.65 8.89 9.10 5.47 3.83 </line>
<line>GLN CA 5.49 5.16 6.31 3.77 </line>
<line>GLY CA 5.94 5.31 3.82 </line>
<line>ILE CA 5.26 3.83 </line>
<line>ARG CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 330</line>
<line>VAL CA 387</line>
<line>VAL CA 341</line>
<line>ARG CA 243</line>
<line>ASP CA 221</line>
<line>PRO CA 168</line>
<line>GLN CA 219</line>
<line>GLY CA 288</line>
<line>ILE CA 379</line>
<line>ARG CA 307</line>
<line>ALA CA 333</line>
</n14>
</entryChain>
<parallel>
<x>19.673999786376953</x>
<y>3.5929999351501465</y>
<z>90.8010025024414</z>
</parallel>
<rotation>
<x>-0.19499999284744263</x>
<y>0.25699999928474426</y>
<z>0.9459999799728394</z>
<x>-0.8809999823570251</x>
<y>0.3779999911785126</y>
<z>-0.2849999964237213</z>
<x>-0.4309999942779541</x>
<y>-0.8889999985694885</y>
<z>0.15199999511241913</z>
</rotation>
<rmsd>1.0730459690093994</rmsd>
<dmax>2.3341450691223145</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JKC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JKCA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 890 CA ASN A 114 22.227 5.558 21.169 1.00 15.35 C </line>
<line>ATOM 898 CA ARG A 115 21.675 8.734 19.077 1.00 14.26 C </line>
<line>ATOM 909 CA CYS A 116 23.623 11.585 20.607 1.00 11.08 C </line>
<line>ATOM 915 CA GLN A 117 26.680 10.502 22.600 1.00 15.44 C </line>
<line>ATOM 924 CA ASN A 118 30.014 10.865 20.779 1.00 21.47 C </line>
<line>ATOM 932 CA ARG A 119 28.261 12.511 17.852 1.00 21.70 C </line>
<line>ATOM 943 CA ASP A 120 28.260 15.954 16.297 1.00 23.90 C </line>
<line>ATOM 951 CA VAL A 121 25.082 17.494 17.783 1.00 19.44 C </line>
<line>ATOM 958 CA ARG A 122 25.507 21.170 16.741 1.00 23.97 C </line>
<line>ATOM 969 CA GLN A 123 23.016 20.680 13.951 1.00 20.80 C </line>
<line>ATOM 978 CA TYR A 124 20.175 20.714 16.470 1.00 15.70 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.00 16.77 16.56 12.73 12.97 9.79 9.43 6.81 6.21 3.84 </line>
<line>ARG CA 12.35 13.07 13.22 9.49 10.16 7.69 8.77 6.37 3.78 </line>
<line>CYS CA 10.60 11.29 10.51 6.71 7.69 5.47 6.43 3.81 </line>
<line>GLN CA 13.57 13.85 12.23 8.64 8.48 5.39 3.82 </line>
<line>ASN CA 14.57 13.85 11.95 8.79 7.00 3.79 </line>
<line>ARG CA 11.60 10.46 9.15 5.91 3.78 </line>
<line>ASP CA 9.38 7.44 5.91 3.83 </line>
<line>VAL CA 6.01 5.39 3.84 </line>
<line>ARG CA 5.36 3.77 </line>
<line>GLN CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 219</line>
<line>ARG CA 264</line>
<line>CYS CA 302</line>
<line>GLN CA 273</line>
<line>ASN CA 190</line>
<line>ARG CA 207</line>
<line>ASP CA 196</line>
<line>VAL CA 279</line>
<line>ARG CA 239</line>
<line>GLN CA 234</line>
<line>TYR CA 335</line>
</n14>
</entryChain>
<parallel>
<x>19.524999618530273</x>
<y>22.805999755859375</y>
<z>108.56999969482422</z>
</parallel>
<rotation>
<x>-0.39800000190734863</x>
<y>0.42800000309944153</y>
<z>0.8119999766349792</z>
<x>-0.7369999885559082</x>
<y>0.3779999911785126</y>
<z>-0.5600000023841858</z>
<x>-0.546999990940094</x>
<y>-0.8209999799728394</y>
<z>0.16500000655651093</z>
</rotation>
<rmsd>1.3006720542907715</rmsd>
<dmax>2.633225917816162</dmax>
</indel>