NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JMEB-3EKFA
confEVID 1JMEB-3EKFA
pdbIDA 1JME
pdbIDB 3EKF
pdbChainA B
pdbChainB A
identity 0.975099980831146
indelSize 3
alignment <alignment>
<seq1>--KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLN-KRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPHGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPL-</seq1>
<seq2>TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANQFQE--KVMNDLVDKIIADRKASQ--SDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIQGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLG</seq2>
<ss_1>-- GGG GGG HHHHHHHHHH EEEE EEEEEE HHHHHHH EEE HHHHHHHHHH HHHHHHHHHHGGG GGGG HHHHHHHHHHHHHHHH EEEHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHHHHHH HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHH HHHGGG HHHHHHHHHHHHH EEEEE EEE EEE EEEEEEHHHGGG HHHH GGG HHHHHHHHHHHHHHHHHEEEEE EEE EEE EEEEEE -</ss_1>
<ss_2> GGG GGG HHHHHHHHHH EEEEE EEEEEE HHHHHHH HHHHHHHHHH HHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHHHHHH EEEHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHGGG -- HHHHHHHHHHHHH -- HHHHHHH HHHHHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHHHHHHHH HHHHH HHHHHHHHHHHHH EEEEE EEE EEE EEEEEEHHHGGG HHHH GGG HHHHHHHHHHHHHHHHHEEEEE EEE EEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1JME</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JMEB</entryIDChain>
<sequence>MNKLN-KRQFQ</sequence>
<secondary-structure>HH - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4961 CA MET B 185 46.587 -25.607 55.011 1.00 29.98 C </line>
<line>ATOM 4969 CA ASN B 186 45.394 -25.870 58.602 1.00 29.54 C </line>
<line>ATOM 4977 CA LYS B 187 48.715 -24.308 59.665 1.00 36.65 C </line>
<line>ATOM 4986 CA LEU B 188 47.371 -21.120 58.094 1.00 34.90 C </line>
<line>ATOM 4994 CA ASN B 201 50.226 -32.878 64.274 1.00 43.52 C </line>
<line>ATOM 5002 CA LYS B 202 53.964 -32.234 63.932 1.00 35.79 C </line>
<line>ATOM 5011 CA ARG B 203 54.864 -35.915 64.444 1.00 42.25 C </line>
<line>ATOM 5016 CA GLN B 204 52.253 -37.128 61.969 1.00 30.29 C </line>
<line>ATOM 5025 CA PHE B 205 53.402 -34.450 59.516 1.00 27.16 C </line>
<line>ATOM 5036 CA GLN B 206 56.946 -35.747 59.768 1.00 33.47 C </line>
</atom-coordinate>
<distance-map>
<line> GLN PHE GLN ARG LYS ASN LEU LYS ASN MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 15.26 12.04 14.60 16.24 13.34 12.33 5.50 5.28 3.79 </line>
<line>ASN CA 15.24 11.77 13.61 14.99 11.93 10.23 5.17 3.82 </line>
<line>LYS CA 14.09 11.17 13.50 13.98 10.42 9.85 3.80 </line>
<line>LEU CA 17.56 14.70 17.18 17.76 14.18 13.59 </line>
<line>ASN CA 8.58 5.93 5.24 5.55 3.81 </line>
<line>LYS CA 6.21 4.97 5.54 3.82 </line>
<line>ARG CA 5.12 5.34 3.80 </line>
<line>GLN CA 5.36 3.81 </line>
<line>PHE CA 3.78 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>MET CA 313</line>
<line>ASN CA 244</line>
<line>LYS CA 222</line>
<line>LEU CA 256</line>
<line>ASN CA 184</line>
<line>LYS CA 189</line>
<line>ARG CA 152</line>
<line>GLN CA 211</line>
<line>PHE CA 283</line>
<line>GLN CA 245</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3EKF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3EKFA</entryIDChain>
<sequence>MNKLQRANQFQ</sequence>
<secondary-structure>HHGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1507 CA MET A 185 4.937 55.471 12.103 1.00 70.89 C </line>
<line>ATOM 1515 CA ASN A 186 3.311 58.944 12.130 1.00 73.20 C </line>
<line>ATOM 1523 CA LYS A 187 6.496 60.730 10.995 1.00 74.88 C </line>
<line>ATOM 1532 CA LEU A 188 6.145 58.940 7.616 1.00 75.94 C </line>
<line>ATOM 1537 CA GLN A 189 2.847 60.715 6.794 1.00 77.14 C </line>
<line>ATOM 1542 CA ARG A 190 4.543 64.123 7.249 1.00 77.90 C </line>
<line>ATOM 1553 CA ALA A 191 5.280 65.800 3.886 1.00 78.24 C </line>
<line>ATOM 1558 CA ASN A 192 6.723 69.041 5.326 1.00 78.29 C </line>
<line>ATOM 1562 CA GLN A 204 8.032 63.417 23.761 1.00 98.21 C </line>
<line>ATOM 1571 CA PHE A 205 9.842 61.528 20.966 1.00 98.03 C </line>
<line>ATOM 1582 CA GLN A 206 13.162 62.655 22.509 1.00 97.53 C </line>
</atom-coordinate>
<distance-map>
<line> GLN PHE GLN ASN ALA ARG GLN LEU LYS ASN MET </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 15.08 11.80 14.44 15.27 13.20 9.93 7.75 5.80 5.60 3.83 </line>
<line>ASN CA 14.78 11.29 13.33 12.64 10.90 7.22 5.64 5.33 3.82 </line>
<line>LYS CA 13.44 10.55 13.14 10.06 8.82 5.42 5.56 3.84 </line>
<line>LEU CA 16.88 14.09 16.86 10.37 7.86 5.44 3.83 </line>
<line>GLN CA 18.90 15.83 17.95 9.30 6.34 3.83 </line>
<line>ARG CA 17.59 14.93 16.89 5.71 3.83 </line>
<line>ALA CA 20.47 18.19 20.21 3.83 </line>
<line>ASN CA 19.43 17.63 19.32 </line>
<line>GLN CA 5.34 3.83 </line>
<line>PHE CA 3.83 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>MET CA 365</line>
<line>ASN CA 289</line>
<line>LYS CA 279</line>
<line>LEU CA 345</line>
<line>GLN CA 292</line>
<line>ARG CA 226</line>
<line>ALA CA 212</line>
<line>ASN CA 133</line>
<line>GLN CA 162</line>
<line>PHE CA 214</line>
<line>GLN CA 185</line>
</n14>
</entryChain>
<parallel>
<x>44.45000076293945</x>
<y>-91.01499938964844</y>
<z>50.42300033569336</z>
</parallel>
<rotation>
<x>0.796999990940094</x>
<y>0.017999999225139618</y>
<z>-0.6039999723434448</z>
<x>0.4309999942779541</x>
<y>-0.7170000076293945</y>
<z>0.546999990940094</z>
<x>-0.42399999499320984</x>
<y>-0.6959999799728394</y>
<z>-0.5789999961853027</z>
</rotation>
<rmsd>6.160077095031738</rmsd>
<dmax>11.26553726196289</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3EKF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3EKFA</entryIDChain>
<sequence>NQFQE--KVMND</sequence>
<secondary-structure> -- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1558 CA ASN A 192 6.723 69.041 5.326 1.00 78.29 C </line>
<line>ATOM 1562 CA GLN A 204 8.032 63.417 23.761 1.00 98.21 C </line>
<line>ATOM 1571 CA PHE A 205 9.842 61.528 20.966 1.00 98.03 C </line>
<line>ATOM 1582 CA GLN A 206 13.162 62.655 22.509 1.00 97.53 C </line>
<line>ATOM 1587 CA GLU A 207 11.939 62.386 26.126 1.00 97.00 C </line>
<line>ATOM 1596 CA LYS A 210 15.992 58.489 27.277 1.00 62.84 C </line>
<line>ATOM 1601 CA VAL A 211 13.808 56.452 29.701 1.00 62.35 C </line>
<line>ATOM 1608 CA MET A 212 15.012 52.850 29.085 1.00 60.69 C </line>
<line>ATOM 1616 CA ASN A 213 18.709 53.614 29.685 1.00 58.07 C </line>
<line>ATOM 1624 CA ASP A 214 18.222 53.274 33.451 1.00 54.85 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ASN MET VAL LYS GLU GLN PHE GLN ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 34.23 31.23 29.92 28.33 26.06 22.45 19.43 17.63 19.32 </line>
<line>GLN CA 17.34 15.66 13.74 10.82 10.00 4.68 5.34 3.83 </line>
<line>PHE CA 17.15 14.74 12.96 10.85 9.32 5.64 3.83 </line>
<line>GLN CA 15.28 12.81 11.95 9.52 6.94 3.83 </line>
<line>GLU CA 13.27 11.64 10.45 7.18 5.74 </line>
<line>LYS CA 8.38 6.08 6.00 3.85 </line>
<line>VAL CA 6.61 5.66 3.85 </line>
<line>MET CA 5.44 3.82 </line>
<line>ASN CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 133</line>
<line>GLN CA 162</line>
<line>PHE CA 214</line>
<line>GLN CA 185</line>
<line>GLU CA 163</line>
<line>LYS CA 233</line>
<line>VAL CA 255</line>
<line>MET CA 350</line>
<line>ASN CA 290</line>
<line>ASP CA 223</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JME</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JMEB</entryIDChain>
<sequence>RQFQEDIKVMND</sequence>
<secondary-structure>HHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5011 CA ARG B 203 54.864 -35.915 64.444 1.00 42.25 C </line>
<line>ATOM 5016 CA GLN B 204 52.253 -37.128 61.969 1.00 30.29 C </line>
<line>ATOM 5025 CA PHE B 205 53.402 -34.450 59.516 1.00 27.16 C </line>
<line>ATOM 5036 CA GLN B 206 56.946 -35.747 59.768 1.00 33.47 C </line>
<line>ATOM 5045 CA GLU B 207 55.669 -39.326 59.386 1.00 30.60 C </line>
<line>ATOM 5054 CA ASP B 208 53.678 -38.434 56.288 1.00 26.79 C </line>
<line>ATOM 5062 CA ILE B 209 56.733 -36.772 54.744 1.00 30.77 C </line>
<line>ATOM 5070 CA LYS B 210 58.855 -39.897 55.229 1.00 26.66 C </line>
<line>ATOM 5075 CA VAL B 211 56.092 -42.106 53.813 1.00 25.42 C </line>
<line>ATOM 5082 CA MET B 212 56.057 -39.934 50.734 1.00 29.95 C </line>
<line>ATOM 5090 CA ASN B 213 59.833 -39.679 50.396 1.00 30.34 C </line>
<line>ATOM 5098 CA ASP B 214 60.494 -43.378 50.977 1.00 34.79 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ASN MET VAL LYS ILE ASP GLU GLN PHE GLN ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 16.39 15.37 14.34 12.36 10.80 9.92 8.62 6.15 5.12 5.34 3.80 </line>
<line>GLN CA 15.09 14.07 12.19 10.30 9.83 8.51 6.00 4.81 5.36 3.81 </line>
<line>PHE CA 14.25 12.32 10.69 9.92 8.82 6.27 5.14 5.38 3.78 </line>
<line>GLN CA 12.17 10.57 10.00 8.75 6.44 5.13 5.48 3.82 </line>
<line>GLU CA 10.51 9.91 8.68 6.24 5.27 5.40 3.79 </line>
<line>ASP CA 9.96 8.61 6.23 5.04 5.48 3.81 </line>
<line>ILE CA 8.48 6.08 5.15 5.45 3.81 </line>
<line>LYS CA 5.73 4.94 5.29 3.81 </line>
<line>VAL CA 5.39 5.62 3.77 </line>
<line>MET CA 5.62 3.80 </line>
<line>ASN CA 3.80 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ARG CA 152</line>
<line>GLN CA 211</line>
<line>PHE CA 283</line>
<line>GLN CA 245</line>
<line>GLU CA 239</line>
<line>ASP CA 319</line>
<line>ILE CA 355</line>
<line>LYS CA 286</line>
<line>VAL CA 308</line>
<line>MET CA 420</line>
<line>ASN CA 371</line>
<line>ASP CA 289</line>
</n14>
</entryChain>
<parallel>
<x>-43.702999114990234</x>
<y>98.91500091552734</y>
<z>-35.013999938964844</z>
</parallel>
<rotation>
<x>0.984000027179718</x>
<y>0.12700000405311584</y>
<z>-0.12600000202655792</z>
<x>-0.05299999937415123</x>
<y>-0.4699999988079071</y>
<z>-0.8809999823570251</z>
<x>-0.17100000381469727</x>
<y>0.8730000257492065</y>
<z>-0.4560000002384186</z>
</rotation>
<rmsd>5.516271114349365</rmsd>
<dmax>13.978376388549805</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3EKF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3EKFA</entryIDChain>
<sequence>RKASQ--SDDLL</sequence>
<secondary-structure>HH -- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1686 CA ARG A 223 24.601 40.840 36.267 1.00 54.88 C </line>
<line>ATOM 1697 CA LYS A 224 27.750 42.645 37.500 1.00 57.53 C </line>
<line>ATOM 1702 CA ALA A 225 26.803 41.570 41.043 1.00 59.44 C </line>
<line>ATOM 1707 CA SER A 226 24.863 38.260 40.829 1.00 60.38 C </line>
<line>ATOM 1713 CA GLN A 229 25.809 31.145 37.325 1.00 55.91 C </line>
<line>ATOM 1718 CA SER A 230 24.188 32.483 34.113 1.00 54.28 C </line>
<line>ATOM 1724 CA ASP A 231 24.502 31.311 30.508 1.00 51.45 C </line>
<line>ATOM 1732 CA ASP A 232 21.909 33.398 28.711 1.00 44.79 C </line>
<line>ATOM 1740 CA LEU A 233 21.749 36.004 25.956 1.00 38.13 C </line>
<line>ATOM 1748 CA LEU A 234 23.342 38.606 28.250 1.00 34.15 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU ASP ASP SER GLN SER ALA LYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.42 11.74 10.94 11.13 8.64 9.83 5.25 5.31 3.83 </line>
<line>LYS CA 11.01 14.61 14.03 13.71 11.29 11.66 6.22 3.82 </line>
<line>ALA CA 13.58 16.86 15.58 14.88 11.72 11.11 3.84 </line>
<line>SER CA 12.68 15.36 13.39 12.45 8.88 7.99 </line>
<line>GLN CA 12.00 13.01 9.72 6.94 3.84 </line>
<line>SER CA 8.52 9.21 5.93 3.80 </line>
<line>ASP CA 7.72 7.09 3.78 </line>
<line>ASP CA 5.42 3.80 </line>
<line>LEU CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 255</line>
<line>LYS CA 186</line>
<line>ALA CA 124</line>
<line>SER CA 149</line>
<line>GLN CA 144</line>
<line>SER CA 240</line>
<line>ASP CA 266</line>
<line>ASP CA 375</line>
<line>LEU CA 457</line>
<line>LEU CA 448</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JME</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1JMEB</entryIDChain>
<sequence>RKASGEQSDDLL</sequence>
<secondary-structure>HH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 5167 CA ARG B 223 63.878 -47.601 37.936 1.00 21.69 C </line>
<line>ATOM 5178 CA LYS B 224 67.501 -46.760 37.491 1.00 45.68 C </line>
<line>ATOM 5187 CA ALA B 225 68.382 -50.215 38.831 1.00 46.20 C </line>
<line>ATOM 5192 CA SER B 226 66.517 -51.831 35.942 1.00 46.43 C </line>
<line>ATOM 5198 CA GLY B 227 67.221 -49.489 33.038 1.00 42.38 C </line>
<line>ATOM 5202 CA GLU B 228 63.506 -49.774 32.296 1.00 50.95 C </line>
<line>ATOM 5207 CA GLN B 229 62.098 -47.198 29.856 1.00 48.35 C </line>
<line>ATOM 5216 CA SER B 230 58.426 -46.184 30.178 1.00 41.18 C </line>
<line>ATOM 5222 CA ASP B 231 56.022 -43.632 28.708 1.00 40.49 C </line>
<line>ATOM 5230 CA ASP B 232 56.003 -41.684 31.993 1.00 31.08 C </line>
<line>ATOM 5238 CA LEU B 233 57.529 -38.456 33.352 1.00 25.50 C </line>
<line>ATOM 5246 CA LEU B 234 60.061 -40.291 35.537 1.00 31.03 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU ASP ASP SER GLN GLU GLY SER ALA LYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.59 12.04 11.50 12.75 9.59 8.28 6.06 6.22 5.37 5.28 3.75 </line>
<line>LYS CA 10.05 13.62 13.72 14.79 11.67 9.36 7.21 5.23 5.39 3.81 </line>
<line>ALA CA 13.36 16.91 16.52 17.28 13.79 11.36 8.17 5.95 3.80 </line>
<line>SER CA 13.23 16.32 15.14 15.16 11.43 8.83 5.16 3.80 </line>
<line>GLY CA 11.92 14.69 13.71 13.36 9.82 6.45 3.80 </line>
<line>GLU CA 10.60 12.84 11.04 10.33 6.57 3.82 </line>
<line>GLN CA 9.17 10.47 8.49 7.14 3.82 </line>
<line>SER CA 8.13 8.40 5.42 3.80 </line>
<line>ASP CA 8.61 7.12 3.82 </line>
<line>ASP CA 5.56 3.82 </line>
<line>LEU CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 258</line>
<line>LYS CA 221</line>
<line>ALA CA 141</line>
<line>SER CA 140</line>
<line>GLY CA 153</line>
<line>GLU CA 181</line>
<line>GLN CA 204</line>
<line>SER CA 269</line>
<line>ASP CA 316</line>
<line>ASP CA 405</line>
<line>LEU CA 472</line>
<line>LEU CA 469</line>
</n14>
</entryChain>
<parallel>
<x>-37.941001892089844</x>
<y>83.63099670410156</y>
<z>1.5219999551773071</z>
</parallel>
<rotation>
<x>0.8190000057220459</x>
<y>0.25699999928474426</y>
<z>0.5130000114440918</z>
<x>0.47999998927116394</x>
<y>0.18199999630451202</y>
<z>-0.8579999804496765</z>
<x>-0.3140000104904175</x>
<y>0.9490000009536743</y>
<z>0.02500000037252903</z>
</rotation>
<rmsd>2.5696310997009277</rmsd>
<dmax>5.810043811798096</dmax>
</indel>