NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JNFA-2HAVA
confEVID 1JNFA-2HAVA
pdbIDA 1JNF
pdbIDB 2HAV
pdbChainA A
pdbChainB A
identity 0.783999979496002
indelSize 2
alignment <alignment>
<seq1>EKTVRWCAVNDHEASKCANFRDSMKKVLPEDGPRIICVKKASYLDCIKAIAAHEADAVTLDAGLVHEAGLTPNNLKPVVAEFYGSKENPKTFYYAVALVKKGSNFQLNELQGKKSCHTGLGRSAGWNIPIGLLLCDLPEPRKPLEKAVASFFSGSCVPCADGADFPQLCQLCPGCGCSSVQPYFGYSGAFKCLKDGLGDVAFVKQETIFENLPSKDERDQYELLCLDNTRKPVDEYEQCHLARVPSHAVVARSVDGKEDLIWELLNQAQEHFGKDKSGDFQLFSSPHGKNLLFKDSAYGFFKVPPRMDANLYLGYEYVTAVRNLREGICPDPLQDECKAVKWCALGHHERLKCDEWSVTSGGLIECESAETPEDCIAKIMNGEADAMSLDGGYVYIAGQCGLVPVLAENYEST-DCKKAPEEGYLSVAVVKKSNPDINWNNLEGKKSCHTAVDRTAGWNIPMGLLYNRINHCRFDEFFRQGCAPGSQKNSSLCELCVG--PSVCAPNNREGYYGYTGAFRCLVEKGDVAFVKSQTVLQNTGGRNSEPWAKDLKEEDFELLCLDGTRKPVSEAHNCHLAKAPNHAVVSRKDKAACVKQKLLDLQVEFGNTVADCSSKFCMFHSKTKDLLFRDDTKCLVDLRGKNTYEKYLGADYIKAVSNLRKCSTSRLLEACTFHKH</seq1>
<seq2>-KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERLKCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRSETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVGNLRKCSTSSLLEACTFRRP</seq2>
<ss_1> EEEEEEEHHHHHHHHHHHHHHHHHH EEEEEEE HHHHHHHHH EEEE HHHHHHHH EEEEEEEEEE EEEEEEEEEEE GGG EE IIIIHHHHH GGG HHHHHHH EE HHHHHHHHHH EEEEEE HHHHH HHHGGEEEEEE EEEEE GGG EEE EEEEE HHHHHHHHHHHHHHH EEE HHHHH HHHHHHHHHHH EEEEE HHHHHHHHHHHH EEEEE HHHHHHHHH EEEE HHHHHHHHH EEEEEEE - EEEEEEE GGG EEE IIIIHHHHHHHHHHH HHHH EEE GGG -- HHHHHHHHHH EEEEEEGG HHHH HHHH GGGEEEEE EEEEE GGG EEE EEEEE HHHHHHHHHHHHHHH EEEEE HHHHH HHHHHHHHH GGG HHHHH </ss_1>
<ss_2>- EEEEE HHHHHHHHHHHHH EEE HHHHHHHHH EEEE HHHHHHHH EEEEEEEEE EEEEEEEEEE GGG EEE IIIIHHHHH GGGG HHHHHHH EEE HHHHHHHHHH EEEEEEEGG HHHGGEEEEEE EEEEE GGG EEE EEEEE HHHHHHHHHHHHHH EEE HHHHH HHHHHHHHHHHH EEEEE HHHHHHHHHHHHH EEE HHHHHHHHH EEEEE HHHHHHHHH EEEEEEE GGG EEEEEEE GGG EEE IIIIHHHHH GGG EEE HHHHHHHHHH EEEEE GGEEEEEE EEEEE GGG EEE EEEEEEHHHHHHHHHHHHHHHHH EEEE HHHHH HHHHHHHHHH HHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1JNF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JNFA</entryIDChain>
<sequence>NYEST-DCKKA</sequence>
<secondary-structure>E - </secondary-structure>
<atom-coordinate>
<line>ATOM 3133 CA ASN A 411 59.461 100.708 16.732 1.00 42.45 C </line>
<line>ATOM 3141 CA TYR A 412 61.683 103.608 15.621 1.00 43.95 C </line>
<line>ATOM 3153 CA GLU A 413 63.307 104.900 18.800 1.00 45.92 C </line>
<line>ATOM 3162 CA SER A 414 65.186 101.882 20.231 1.00 49.10 C </line>
<line>ATOM 3168 CA THR A 415 67.091 98.792 19.136 1.00 49.15 C </line>
<line>ATOM 3175 CA ASP A 416 65.838 96.832 22.090 1.00 50.46 C </line>
<line>ATOM 3183 CA CYS A 417 63.085 94.776 20.476 1.00 52.84 C </line>
<line>ATOM 3189 CA LYS A 418 61.522 93.873 23.839 1.00 57.24 C </line>
<line>ATOM 3198 CA LYS A 419 60.396 97.439 24.341 1.00 56.72 C </line>
<line>ATOM 3207 CA ALA A 420 56.686 98.243 24.211 1.00 54.03 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS LYS CYS ASP THR SER GLU TYR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 8.35 8.33 10.07 7.90 9.19 8.23 6.81 6.05 3.82 </line>
<line>TYR CA 11.29 10.76 12.74 10.18 10.25 8.05 6.04 3.80 </line>
<line>GLU CA 10.84 9.74 12.25 10.26 9.07 7.19 3.83 </line>
<line>SER CA 10.07 7.72 9.52 7.41 5.42 3.79 </line>
<line>THR CA 11.59 8.59 8.79 5.83 3.76 </line>
<line>ASP CA 9.50 5.92 5.52 3.80 </line>
<line>CYS CA 8.18 5.41 3.82 </line>
<line>LYS CA 6.53 3.77 </line>
<line>LYS CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ASN CA 429</line>
<line>TYR CA 374</line>
<line>GLU CA 293</line>
<line>SER CA 235</line>
<line>THR CA 249</line>
<line>ASP CA 219</line>
<line>CYS CA 301</line>
<line>LYS CA 231</line>
<line>LYS CA 231</line>
<line>ALA CA 267</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HAV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2HAVA</entryIDChain>
<sequence>NYNKSDNCEDT</sequence>
<secondary-structure>E GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 3133 CA ASN A 411 -55.165 8.265 -15.126 1.00 66.70 C </line>
<line>ATOM 3141 CA TYR A 412 -56.228 8.369 -18.769 1.00 77.05 C </line>
<line>ATOM 3153 CA ASN A 413 -60.020 7.958 -19.347 1.00 91.50 C </line>
<line>ATOM 3161 CA LYS A 414 -63.295 9.074 -17.654 1.00 99.31 C </line>
<line>ATOM 3170 CA SER A 415 -62.123 12.634 -17.105 1.00103.50 C </line>
<line>ATOM 3176 CA ASP A 416 -64.414 14.594 -14.705 1.00108.05 C </line>
<line>ATOM 3184 CA ASN A 417 -64.111 12.397 -11.599 1.00103.82 C </line>
<line>ATOM 3192 CA CYS A 418 -60.362 11.757 -12.033 1.00 95.59 C </line>
<line>ATOM 3198 CA GLU A 419 -58.473 12.628 -8.820 1.00 93.38 C </line>
<line>ATOM 3207 CA ASP A 420 -60.229 9.934 -6.797 1.00 96.14 C </line>
<line>ATOM 3215 CA THR A 421 -60.565 6.646 -8.716 1.00 92.42 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP GLU CYS ASN ASP SER LYS ASN TYR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 8.54 9.89 8.35 6.98 10.47 11.22 8.45 8.55 6.44 3.80 </line>
<line>TYR CA 11.08 12.72 11.05 8.60 11.39 11.06 7.46 7.19 3.86 </line>
<line>ASN CA 10.73 12.71 11.62 8.25 9.82 9.21 5.60 3.85 </line>
<line>LYS CA 9.66 11.31 10.67 6.88 6.95 6.36 3.79 </line>
<line>SER CA 10.42 10.82 9.05 5.44 5.86 3.85 </line>
<line>ASP CA 10.67 10.09 8.59 5.62 3.82 </line>
<line>ASN CA 7.35 6.65 6.29 3.83 </line>
<line>CYS CA 6.10 5.55 3.83 </line>
<line>GLU CA 6.34 3.80 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASN CA 402</line>
<line>TYR CA 333</line>
<line>ASN CA 257</line>
<line>LYS CA 186</line>
<line>SER CA 202</line>
<line>ASP CA 164</line>
<line>ASN CA 177</line>
<line>CYS CA 269</line>
<line>GLU CA 317</line>
<line>ASP CA 255</line>
<line>THR CA 270</line>
</n14>
</entryChain>
<parallel>
<x>123.36900329589844</x>
<y>89.03600311279297</y>
<z>34.672000885009766</z>
</parallel>
<rotation>
<x>-0.7639999985694885</x>
<y>-0.1420000046491623</y>
<z>-0.6290000081062317</z>
<x>0.5019999742507935</x>
<y>-0.7429999709129333</y>
<z>-0.44200000166893005</z>
<x>-0.40400001406669617</x>
<y>-0.6539999842643738</y>
<z>0.6399999856948853</z>
</rotation>
<rmsd>1.501194953918457</rmsd>
<dmax>2.3049681186676025</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1JNF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JNFA</entryIDChain>
<sequence>ELCVG--PSVCA</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 3794 CA GLU A 495 48.380 117.863 -10.724 1.00 54.62 C </line>
<line>ATOM 3803 CA LEU A 496 51.884 117.858 -9.155 1.00 53.90 C </line>
<line>ATOM 3811 CA CYS A 497 52.500 114.119 -9.361 1.00 53.57 C </line>
<line>ATOM 3817 CA VAL A 498 55.053 112.698 -11.701 1.00 56.62 C </line>
<line>ATOM 3824 CA GLY A 499 56.025 109.061 -11.265 1.00 59.45 C </line>
<line>ATOM 3828 CA PRO A 500 55.503 106.981 -14.331 1.00 59.33 C </line>
<line>ATOM 3835 CA SER A 501 52.138 105.882 -13.006 1.00 56.79 C </line>
<line>ATOM 3841 CA VAL A 502 50.774 109.288 -12.367 1.00 52.28 C </line>
<line>ATOM 3848 CA CYS A 503 49.209 109.641 -9.024 1.00 48.25 C </line>
<line>ATOM 3854 CA ALA A 504 49.242 106.025 -8.052 1.00 47.44 C </line>
</atom-coordinate>
<distance-map>
<line> ALA CYS VAL SER PRO GLY VAL CYS LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 12.17 8.44 9.05 12.76 13.50 11.67 8.49 5.73 3.84 </line>
<line>LEU CA 12.17 8.64 9.22 12.58 12.58 9.95 6.57 3.79 </line>
<line>CYS CA 8.82 5.57 5.95 9.01 9.20 6.45 3.74 </line>
<line>VAL CA 9.57 7.12 5.51 7.53 6.31 3.79 </line>
<line>GLY CA 8.10 7.20 5.37 5.31 3.74 </line>
<line>PRO CA 8.92 8.65 5.62 3.78 </line>
<line>SER CA 5.74 6.21 3.72 </line>
<line>VAL CA 5.62 3.71 </line>
<line>CYS CA 3.74 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLU CA 322</line>
<line>LEU CA 366</line>
<line>CYS CA 383</line>
<line>VAL CA 315</line>
<line>GLY CA 301</line>
<line>PRO CA 200</line>
<line>SER CA 235</line>
<line>VAL CA 273</line>
<line>CYS CA 356</line>
<line>ALA CA 363</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HAV</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2HAVA</entryIDChain>
<sequence>KLCMGSGLNLCE</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 3786 CA LYS A 496 -42.905 -17.201 -40.645 1.00 97.71 C </line>
<line>ATOM 3795 CA LEU A 497 -46.523 -15.951 -40.623 1.00 95.84 C </line>
<line>ATOM 3803 CA CYS A 498 -45.749 -12.273 -41.126 1.00 95.84 C </line>
<line>ATOM 3809 CA MET A 499 -46.774 -10.563 -44.373 1.00 98.42 C </line>
<line>ATOM 3817 CA GLY A 500 -45.510 -7.256 -45.777 1.00101.52 C </line>
<line>ATOM 3821 CA SER A 501 -42.377 -8.169 -47.718 1.00102.51 C </line>
<line>ATOM 3827 CA GLY A 502 -39.120 -6.441 -48.501 1.00 99.63 C </line>
<line>ATOM 3831 CA LEU A 503 -37.012 -4.987 -45.710 1.00 97.35 C </line>
<line>ATOM 3839 CA ASN A 504 -40.018 -4.815 -43.382 1.00 96.68 C </line>
<line>ATOM 3847 CA LEU A 505 -40.860 -8.506 -43.185 1.00 95.63 C </line>
<line>ATOM 3855 CA CYS A 506 -41.772 -9.220 -39.572 1.00 94.49 C </line>
<line>ATOM 3861 CA GLU A 507 -40.820 -5.664 -38.516 1.00 91.50 C </line>
</atom-coordinate>
<distance-map>
<line> GLU CYS LEU ASN LEU GLY SER GLY MET CYS LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.92 8.13 9.29 13.01 14.48 13.85 11.48 11.49 8.54 5.71 3.83 </line>
<line>LEU CA 11.95 8.31 9.70 13.19 15.38 14.40 11.32 10.16 6.57 3.79 </line>
<line>CYS CA 8.65 5.25 6.51 9.67 12.27 11.50 8.47 6.85 3.81 </line>
<line>MET CA 9.68 7.06 6.37 8.93 11.32 9.62 6.02 3.81 </line>
<line>GLY CA 8.79 7.51 5.47 6.47 8.80 6.99 3.80 </line>
<line>SER CA 9.66 8.24 4.79 5.97 6.55 3.77 </line>
<line>GLY CA 10.16 9.72 5.96 5.45 3.79 </line>
<line>LEU CA 8.17 8.85 5.79 3.81 </line>
<line>ASN CA 5.00 6.08 3.79 </line>
<line>LEU CA 5.47 3.79 </line>
<line>CYS CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>LYS CA 319</line>
<line>LEU CA 367</line>
<line>CYS CA 397</line>
<line>MET CA 329</line>
<line>GLY CA 245</line>
<line>SER CA 185</line>
<line>GLY CA 130</line>
<line>LEU CA 147</line>
<line>ASN CA 206</line>
<line>LEU CA 258</line>
<line>CYS CA 339</line>
<line>GLU CA 288</line>
</n14>
</entryChain>
<parallel>
<x>95.95099639892578</x>
<y>121.91300201416016</y>
<z>31.61400032043457</z>
</parallel>
<rotation>
<x>-0.597000002861023</x>
<y>-0.3840000033378601</y>
<z>-0.7039999961853027</z>
<x>0.32199999690055847</x>
<y>-0.9190000295639038</y>
<z>0.2290000021457672</z>
<x>-0.7350000143051147</x>
<y>-0.09099999815225601</y>
<z>0.671999990940094</z>
</rotation>
<rmsd>1.8803459405899048</rmsd>
<dmax>4.100467205047607</dmax>
</indel>