NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1JOEA-1VH2A
confEVID 1JOEA-1VH2A
pdbIDA 1JOE
pdbIDB 1VH2
pdbChainA A
pdbChainB A
identity 0.466199994087219
indelSize 2
alignment <alignment>
<seq1>-----VDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKN-----</seq1>
<seq2>VESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLE----GVVDVSPMGCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQP--IPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLER</seq2>
<ss_1>----- GGG EEE EEEEE EEEEEEEEE HHHHHHHHHHH EEE EEEEEEE HHHH HHHHHHGGG HHHH HHHHHHHHH HHHH -----</ss_1>
<ss_2> EEE EEEEEEEEEE EEEEEEEEE HHHHHHHHHHHHHHHH ---- EEEEE EEEEEE HHHHHHHHHHHHHHHH -- HHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1VH2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VH2A</entryIDChain>
<sequence>RDHLE----GVVDV</sequence>
<secondary-structure>H ---- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 480 CA ARG A 68 6.679 -21.881 12.634 1.00 6.53 C </line>
<line>ATOM 491 CA ASP A 69 4.565 -21.648 9.450 1.00 15.13 C </line>
<line>ATOM 499 CA HIS A 70 7.643 -22.572 7.425 1.00 8.10 C </line>
<line>ATOM 509 CA LEU A 71 9.824 -24.656 9.756 1.00 11.25 C </line>
<line>ATOM 517 CA GLU A 72 9.164 -27.551 12.162 1.00 10.76 C </line>
<line>ATOM 526 CA GLY A 73 10.817 -28.067 15.556 1.00 8.26 C </line>
<line>ATOM 530 CA VAL A 74 11.074 -24.367 16.447 1.00 5.90 C </line>
<line>ATOM 537 CA VAL A 75 11.767 -23.835 20.146 1.00 6.48 C </line>
<line>ATOM 544 CA ASP A 76 11.409 -20.037 19.973 1.00 6.33 C </line>
<line>ATOM 552 CA VAL A 77 12.616 -16.955 18.077 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP VAL VAL GLY GLU LEU HIS ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 9.44 8.92 9.28 6.33 8.00 6.21 5.09 5.34 3.83 </line>
<line>ASP CA 12.70 12.66 13.08 9.94 10.84 7.96 6.07 3.80 </line>
<line>HIS CA 13.03 13.34 13.43 9.82 10.31 7.04 3.81 </line>
<line>LEU CA 11.68 11.32 10.60 6.81 6.80 3.82 </line>
<line>GLU CA 12.62 11.07 9.18 5.67 3.81 </line>
<line>GLY CA 11.54 9.18 6.32 3.81 </line>
<line>VAL CA 7.74 5.59 3.80 </line>
<line>VAL CA 7.23 3.82 </line>
<line>ASP CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 272</line>
<line>ASP CA 227</line>
<line>HIS CA 262</line>
<line>LEU CA 291</line>
<line>GLU CA 246</line>
<line>GLY CA 250</line>
<line>VAL CA 302</line>
<line>VAL CA 253</line>
<line>ASP CA 287</line>
<line>VAL CA 380</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JOE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JOEA</entryIDChain>
<sequence>RDHLNGDSIEIIDI</sequence>
<secondary-structure>H EE</secondary-structure>
<atom-coordinate>
<line>ATOM 441 CA ARG A 65 35.659 -1.091 -23.062 1.00 65.26 C </line>
<line>ATOM 452 CA ASP A 66 35.349 -1.550 -26.848 1.00 56.78 C </line>
<line>ATOM 460 CA HIS A 67 35.912 2.198 -27.145 1.00 42.21 C </line>
<line>ATOM 470 CA LEU A 68 38.056 2.593 -24.045 1.00 47.84 C </line>
<line>ATOM 478 CA ASN A 69 40.828 0.763 -22.146 1.00 68.40 C </line>
<line>ATOM 486 CA GLY A 70 44.202 0.383 -23.842 1.00 68.87 C </line>
<line>ATOM 490 CA ASP A 71 47.917 1.018 -23.448 1.00 73.74 C </line>
<line>ATOM 498 CA SER A 72 47.183 2.993 -20.297 1.00 40.84 C </line>
<line>ATOM 504 CA ILE A 73 43.457 2.518 -19.700 1.00 45.06 C </line>
<line>ATOM 512 CA GLU A 74 41.834 -0.430 -17.945 1.00 49.34 C </line>
<line>ATOM 521 CA ILE A 75 38.298 -0.287 -16.606 1.00 51.80 C </line>
<line>ATOM 529 CA ILE A 76 37.599 -2.203 -13.412 1.00 50.72 C </line>
<line>ATOM 537 CA ASP A 77 33.820 -1.906 -13.004 1.00 48.94 C </line>
<line>ATOM 545 CA ILE A 78 31.083 0.120 -14.678 1.00 50.49 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ASP ILE ILE GLU ILE SER ASP GLY ASN LEU HIS ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 9.63 10.26 9.91 7.02 8.05 9.23 12.54 12.44 8.70 5.57 4.50 5.25 3.83 </line>
<line>ASP CA 13.00 13.93 13.64 10.73 11.07 11.55 14.27 13.27 9.55 7.58 5.69 3.80 </line>
<line>HIS CA 13.53 14.87 14.52 11.09 11.25 10.60 13.21 12.62 9.11 7.16 3.79 </line>
<line>LEU CA 11.94 12.65 11.67 7.98 7.79 6.93 9.87 10.00 6.53 3.83 </line>
<line>ASN CA 12.29 11.82 9.77 6.18 4.48 4.00 6.98 7.21 3.80 </line>
<line>GLY CA 16.00 15.18 12.61 9.36 6.41 4.72 5.32 3.79 </line>
<line>ASP CA 19.00 17.79 14.75 11.88 8.33 6.02 3.79 </line>
<line>SER CA 17.29 15.99 12.89 10.16 6.77 3.80 </line>
<line>ILE CA 13.57 12.54 9.81 6.64 3.80 </line>
<line>GLU CA 11.25 9.53 6.45 3.78 </line>
<line>ILE CA 7.48 5.97 3.79 </line>
<line>ILE CA 7.03 3.81 </line>
<line>ASP CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ARG CA 317</line>
<line>ASP CA 240</line>
<line>HIS CA 275</line>
<line>LEU CA 320</line>
<line>ASN CA 272</line>
<line>GLY CA 183</line>
<line>ASP CA 131</line>
<line>SER CA 188</line>
<line>ILE CA 265</line>
<line>GLU CA 265</line>
<line>ILE CA 323</line>
<line>ILE CA 275</line>
<line>ASP CA 297</line>
<line>ILE CA 391</line>
</n14>
</entryChain>
<parallel>
<x>-29.0</x>
<y>-24.320999145507812</y>
<z>34.347999572753906</z>
</parallel>
<rotation>
<x>0.017999999225139618</x>
<y>-1.0</y>
<z>0.008999999612569809</z>
<x>0.8100000023841858</x>
<y>0.009999999776482582</y>
<z>-0.5860000252723694</z>
<x>0.5860000252723694</x>
<y>0.017999999225139618</y>
<z>0.8100000023841858</z>
</rotation>
<rmsd>0.5485630035400391</rmsd>
<dmax>0.7518759965896606</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1VH2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VH2A</entryIDChain>
<sequence>GHDQP--IPGVS</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 806 CA GLY A 112 3.574 -8.095 3.660 1.00 12.14 C </line>
<line>ATOM 810 CA HIS A 113 2.036 -8.088 7.157 1.00 12.80 C </line>
<line>ATOM 820 CA ASP A 114 -0.556 -5.329 6.814 1.00 21.41 C </line>
<line>ATOM 828 CA GLN A 115 -2.831 -6.546 9.604 1.00 23.94 C </line>
<line>ATOM 837 CA PRO A 116 -2.489 -5.645 13.290 1.00 20.51 C </line>
<line>ATOM 844 CA ILE A 117 0.459 -7.107 15.203 1.00 10.42 C </line>
<line>ATOM 852 CA PRO A 118 -0.539 -10.304 16.986 1.00 14.57 C </line>
<line>ATOM 859 CA GLY A 119 -0.492 -10.491 20.776 1.00 15.86 C </line>
<line>ATOM 863 CA VAL A 120 -0.344 -6.752 21.381 1.00 11.45 C </line>
<line>ATOM 870 CA SER A 121 -2.285 -6.091 24.577 1.00 6.83 C </line>
</atom-coordinate>
<distance-map>
<line> SER VAL GLY PRO ILE PRO GLN ASP HIS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.81 18.20 17.75 14.12 12.00 11.64 8.87 5.89 3.82 </line>
<line>HIS CA 18.06 14.48 14.06 10.40 8.26 8.00 5.66 3.80 </line>
<line>ASP CA 17.86 14.64 14.89 11.32 8.64 6.77 3.80 </line>
<line>GLN CA 14.99 12.04 12.08 8.59 6.52 3.81 </line>
<line>PRO CA 11.30 8.44 9.14 6.26 3.81 </line>
<line>ILE CA 9.82 6.24 6.59 3.79 </line>
<line>PRO CA 8.86 5.65 3.79 </line>
<line>GLY CA 6.08 3.79 </line>
<line>VAL CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLY CA 258</line>
<line>HIS CA 275</line>
<line>ASP CA 191</line>
<line>GLN CA 178</line>
<line>PRO CA 222</line>
<line>ILE CA 298</line>
<line>PRO CA 277</line>
<line>GLY CA 229</line>
<line>VAL CA 229</line>
<line>SER CA 160</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JOE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1JOEA</entryIDChain>
<sequence>GVQDQASIPELN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 812 CA GLY A 113 22.628 -0.982 -32.591 1.00 52.69 C </line>
<line>ATOM 816 CA VAL A 114 20.884 -3.451 -30.296 1.00 60.14 C </line>
<line>ATOM 823 CA GLN A 115 18.035 -5.005 -32.281 1.00 55.18 C </line>
<line>ATOM 832 CA ASP A 116 16.019 -6.767 -29.603 1.00 67.01 C </line>
<line>ATOM 840 CA GLN A 117 16.207 -8.661 -26.313 1.00 70.94 C </line>
<line>ATOM 849 CA ALA A 118 16.996 -11.601 -28.578 1.00 83.08 C </line>
<line>ATOM 854 CA SER A 119 20.493 -10.144 -28.918 1.00 80.90 C </line>
<line>ATOM 860 CA ILE A 120 21.339 -10.538 -25.239 1.00 63.39 C </line>
<line>ATOM 868 CA PRO A 121 22.519 -14.140 -24.895 1.00 79.19 C </line>
<line>ATOM 875 CA GLU A 122 23.297 -13.523 -21.221 1.00 67.51 C </line>
<line>ATOM 884 CA LEU A 123 19.554 -13.279 -20.596 1.00 63.35 C </line>
<line>ATOM 892 CA ASN A 124 19.475 -16.831 -19.235 1.00 65.66 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LEU GLU PRO ILE SER ALA GLN ASP GLN VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 20.96 17.45 16.94 15.24 12.13 10.10 12.67 11.82 9.28 6.11 3.80 </line>
<line>VAL CA 17.42 13.87 13.77 12.09 8.72 6.84 9.19 8.05 5.93 3.80 </line>
<line>GLN CA 17.67 14.40 14.92 12.57 9.55 6.62 7.64 7.23 3.79 </line>
<line>ASP CA 14.86 11.66 13.00 10.90 7.85 5.65 5.04 3.80 </line>
<line>GLN CA 11.29 8.08 9.99 8.48 5.57 5.23 3.79 </line>
<line>ALA CA 10.99 8.55 9.88 7.11 5.58 3.80 </line>
<line>SER CA 11.81 8.94 8.86 6.02 3.80 </line>
<line>ILE CA 8.90 5.68 5.37 3.81 </line>
<line>PRO CA 6.97 5.29 3.81 </line>
<line>GLU CA 5.43 3.80 </line>
<line>LEU CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLY CA 249</line>
<line>VAL CA 282</line>
<line>GLN CA 192</line>
<line>ASP CA 217</line>
<line>GLN CA 262</line>
<line>ALA CA 187</line>
<line>SER CA 211</line>
<line>ILE CA 277</line>
<line>PRO CA 203</line>
<line>GLU CA 222</line>
<line>LEU CA 233</line>
<line>ASN CA 169</line>
</n14>
</entryChain>
<parallel>
<x>-20.22100067138672</x>
<y>0.18299999833106995</y>
<z>39.49100112915039</z>
</parallel>
<rotation>
<x>0.6850000023841858</x>
<y>-0.7210000157356262</y>
<z>0.10199999809265137</z>
<x>0.6309999823570251</x>
<y>0.5180000066757202</y>
<z>-0.5770000219345093</z>
<x>0.3630000054836273</x>
<y>0.46000000834465027</y>
<z>0.8100000023841858</z>
</rotation>
<rmsd>1.4398159980773926</rmsd>
<dmax>1.7526229619979858</dmax>
</indel>