NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1LA6B-1MKOC
confEVID 1LA6B-1MKOC
pdbIDA 1LA6
pdbIDB 1MKO
pdbChainA B
pdbChainB C
identity 0.318800002336502
indelSize 2
alignment <alignment>
<seq1>VEWTDKERSIISDIFSHMD--YDDIGPKALSRCLVVYPWTQRYFI-----MSNANVAAHGIKVLHGLDRGMKNMDNIADAYTDLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVSALGK---</seq1>
<seq2>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq2>
<ss_1> HHHHHHHHHHGGG --HHHHHHHHHHHHHHH GGG ----- HHHHHHHHHHHHHHHHHHH GGG GGGHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHH ---</ss_1>
<ss_2>- HHHHHHHHHHH GGGHHHHHHHHHHHHHHH GGGG HHHHHHHHHHHHHHHHHH GGG HHHHIIIIII HHHHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1LA6</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1LA6B</entryIDChain>
<sequence>FSHMD--YDDIG</sequence>
<secondary-structure>GGG --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1233 CA PHE B 15 23.487 13.932 -5.919 1.00 27.17 C </line>
<line>ATOM 1244 CA SER B 16 26.937 15.471 -6.318 1.00 38.31 C </line>
<line>ATOM 1250 CA HIS B 17 28.609 12.074 -5.878 1.00 43.50 C </line>
<line>ATOM 1260 CA MET B 18 26.098 10.155 -7.974 1.00 38.08 C </line>
<line>ATOM 1268 CA ASP B 19 27.015 9.120 -11.505 1.00 37.65 C </line>
<line>ATOM 1276 CA TYR B 20 23.663 9.231 -13.362 1.00 35.97 C </line>
<line>ATOM 1288 CA ASP B 21 24.934 7.066 -16.222 1.00 39.68 C </line>
<line>ATOM 1296 CA ASP B 22 25.716 4.335 -13.709 1.00 34.27 C </line>
<line>ATOM 1304 CA ILE B 23 22.798 4.624 -11.254 1.00 28.32 C </line>
<line>ATOM 1312 CA GLY B 24 19.993 5.344 -13.696 1.00 22.56 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ILE ASP ASP TYR ASP MET HIS SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 12.10 10.75 12.56 12.47 8.81 8.17 5.03 5.45 3.80 </line>
<line>SER CA 14.33 12.62 13.42 13.14 9.96 8.20 5.63 3.81 </line>
<line>HIS CA 13.44 10.87 11.38 12.07 9.41 6.55 3.79 </line>
<line>MET CA 9.65 7.23 8.18 8.88 5.98 3.79 </line>
<line>ASP CA 8.27 6.17 5.43 5.55 3.83 </line>
<line>TYR CA 5.36 5.14 5.32 3.81 </line>
<line>ASP CA 5.81 5.93 3.79 </line>
<line>ASP CA 5.81 3.82 </line>
<line>ILE CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PHE CA 360</line>
<line>SER CA 244</line>
<line>HIS CA 243</line>
<line>MET CA 324</line>
<line>ASP CA 266</line>
<line>TYR CA 301</line>
<line>ASP CA 258</line>
<line>ASP CA 288</line>
<line>ILE CA 358</line>
<line>GLY CA 377</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1MKO</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1MKOC</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>H GGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2287 CA TRP C 14 7.107 71.163 15.796 1.00 46.06 C </line>
<line>ATOM 2301 CA GLY C 15 4.410 73.776 16.227 1.00 46.74 C </line>
<line>ATOM 2305 CA LYS C 16 2.170 70.732 16.094 1.00 49.40 C </line>
<line>ATOM 2314 CA VAL C 17 3.760 68.911 19.004 1.00 57.07 C </line>
<line>ATOM 2321 CA GLY C 18 1.396 71.137 20.960 1.00 63.08 C </line>
<line>ATOM 2325 CA ALA C 19 0.604 70.218 24.540 1.00 61.27 C </line>
<line>ATOM 2330 CA HIS C 20 2.220 66.881 23.706 1.00 52.68 C </line>
<line>ATOM 2340 CA ALA C 21 5.833 68.178 23.901 1.00 48.20 C </line>
<line>ATOM 2345 CA GLY C 22 6.606 66.591 27.267 1.00 41.15 C </line>
<line>ATOM 2349 CA GLU C 23 4.690 63.480 26.351 1.00 40.49 C </line>
<line>ATOM 2358 CA TYR C 24 6.674 62.913 23.145 1.00 36.12 C </line>
<line>ATOM 2370 CA GLY C 25 9.812 64.240 24.798 1.00 29.91 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 11.67 11.06 13.28 12.36 8.73 10.24 10.94 7.70 5.15 4.96 3.78 </line>
<line>GLY CA 13.91 13.08 14.44 13.35 9.60 10.41 9.81 6.20 5.64 3.78 </line>
<line>LYS CA 13.28 11.45 12.81 12.71 8.99 8.53 8.61 4.94 3.78 </line>
<line>VAL CA 9.59 7.85 9.18 9.04 5.37 5.35 6.51 3.79 </line>
<line>GLY CA 11.54 10.01 9.93 9.36 6.09 5.13 3.78 </line>
<line>ALA CA 10.98 9.60 8.09 7.52 5.65 3.80 </line>
<line>HIS CA 8.11 5.99 4.97 5.66 3.84 </line>
<line>ALA CA 5.67 5.39 5.42 3.80 </line>
<line>GLY CA 4.68 5.52 3.77 </line>
<line>GLU CA 5.41 3.81 </line>
<line>TYR CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 400</line>
<line>GLY CA 267</line>
<line>LYS CA 267</line>
<line>VAL CA 321</line>
<line>GLY CA 215</line>
<line>ALA CA 183</line>
<line>HIS CA 255</line>
<line>ALA CA 311</line>
<line>GLY CA 291</line>
<line>GLU CA 305</line>
<line>TYR CA 359</line>
<line>GLY CA 400</line>
</n14>
</entryChain>
<parallel>
<x>21.31100082397461</x>
<y>-59.073001861572266</y>
<z>-30.81100082397461</z>
</parallel>
<rotation>
<x>-0.9610000252723694</x>
<y>0.23800000548362732</y>
<z>-0.14300000667572021</z>
<x>0.2630000114440918</x>
<y>0.9459999799728394</y>
<z>-0.1889999955892563</z>
<x>0.09000000357627869</x>
<y>-0.21899999678134918</y>
<z>-0.972000002861023</z>
</rotation>
<rmsd>1.4588379859924316</rmsd>
<dmax>3.307094097137451</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1LA6</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1LA6B</entryIDChain>
<sequence>QRYFI-----MSNAN</sequence>
<secondary-structure>GGG ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1430 CA GLN B 39 8.656 -4.420 -18.548 1.00 34.33 C </line>
<line>ATOM 1439 CA ARG B 40 5.451 -3.757 -20.492 1.00 45.10 C </line>
<line>ATOM 1450 CA TYR B 41 6.185 -0.019 -20.726 1.00 49.28 C </line>
<line>ATOM 1462 CA PHE B 42 9.378 -0.775 -22.626 1.00 60.89 C </line>
<line>ATOM 1473 CA ILE B 54 17.004 -5.890 -19.862 1.00 81.87 C </line>
<line>ATOM 1481 CA MET B 55 20.481 -4.990 -18.575 1.00 74.99 C </line>
<line>ATOM 1489 CA SER B 56 21.905 -4.269 -22.046 1.00 60.44 C </line>
<line>ATOM 1495 CA ASN B 57 18.876 -2.514 -23.558 1.00 40.64 C </line>
<line>ATOM 1503 CA ALA B 58 19.887 1.045 -24.531 1.00 29.24 C </line>
<line>ATOM 1508 CA ASN B 59 16.311 2.252 -24.394 1.00 31.84 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA ASN SER MET ILE PHE TYR ARG GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 11.72 13.85 11.54 13.70 11.84 8.58 5.52 5.50 3.81 </line>
<line>ARG CA 13.01 15.74 13.83 16.54 15.20 11.77 5.37 3.82 </line>
<line>TYR CA 11.01 14.26 13.24 16.34 15.29 12.34 3.79 </line>
<line>PHE CA 7.77 10.83 9.70 13.02 12.55 9.59 </line>
<line>ILE CA 9.34 8.84 5.34 5.61 3.82 </line>
<line>MET CA 10.18 8.50 5.79 3.82 </line>
<line>SER CA 8.91 6.20 3.81 </line>
<line>ASN CA 5.48 3.83 </line>
<line>ALA CA 3.78 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLN CA 265</line>
<line>ARG CA 213</line>
<line>TYR CA 282</line>
<line>PHE CA 253</line>
<line>ILE CA 216</line>
<line>MET CA 214</line>
<line>SER CA 165</line>
<line>ASN CA 188</line>
<line>ALA CA 170</line>
<line>ASN CA 200</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1MKO</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1MKOC</entryIDChain>
<sequence>KTYFPHFDLSHGSAQ</sequence>
<secondary-structure>GGG HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2486 CA LYS C 40 21.035 54.800 30.384 1.00 30.65 C </line>
<line>ATOM 2495 CA THR C 41 24.526 55.087 31.929 1.00 29.21 C </line>
<line>ATOM 2502 CA TYR C 42 24.386 58.858 31.467 1.00 22.34 C </line>
<line>ATOM 2514 CA PHE C 43 21.553 58.962 34.055 1.00 25.88 C </line>
<line>ATOM 2525 CA PRO C 44 22.909 56.933 36.969 1.00 30.25 C </line>
<line>ATOM 2532 CA HIS C 45 20.751 58.646 39.571 1.00 32.06 C </line>
<line>ATOM 2542 CA PHE C 46 17.502 58.530 37.655 1.00 35.00 C </line>
<line>ATOM 2553 CA ASP C 47 14.795 55.904 38.086 1.00 29.61 C </line>
<line>ATOM 2561 CA LEU C 48 14.550 55.084 34.423 1.00 23.00 C </line>
<line>ATOM 2569 CA SER C 49 11.718 52.524 34.847 1.00 32.20 C </line>
<line>ATOM 2575 CA HIS C 50 8.815 52.401 32.418 1.00 46.64 C </line>
<line>ATOM 2585 CA GLY C 51 6.551 55.220 33.555 1.00 43.41 C </line>
<line>ATOM 2589 CA SER C 52 9.016 57.009 35.848 1.00 38.44 C </line>
<line>ATOM 2595 CA ALA C 53 8.267 60.565 37.003 1.00 36.74 C </line>
<line>ATOM 2600 CA GLN C 54 11.913 61.565 36.513 1.00 34.91 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ALA SER GLY HIS SER LEU ASP PHE HIS PRO PHE TYR THR LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.91 15.49 13.39 14.83 12.62 10.58 7.65 9.97 8.90 9.96 7.17 5.57 5.37 3.83 </line>
<line>THR CA 14.90 17.89 16.11 18.05 15.95 13.38 10.28 11.54 9.69 9.24 5.61 5.33 3.80 </line>
<line>TYR CA 13.72 17.13 16.09 18.32 16.88 14.56 10.94 12.02 9.26 8.88 6.01 3.84 </line>
<line>PHE CA 10.28 13.70 12.81 15.47 14.42 11.78 8.01 8.44 5.44 5.58 3.80 </line>
<line>PRO CA 11.94 15.09 13.94 16.80 15.49 12.21 8.93 8.25 5.68 3.79 </line>
<line>HIS CA 9.80 12.89 12.42 15.80 15.25 11.89 8.81 6.72 3.77 </line>
<line>PHE CA 6.46 9.48 8.81 12.15 11.85 8.80 5.57 3.80 </line>
<line>ASP CA 6.54 8.09 6.29 9.43 8.95 5.60 3.76 </line>
<line>LEU CA 7.30 8.73 6.03 8.05 6.64 3.84 </line>
<line>SER CA 9.20 9.01 5.33 5.97 3.79 </line>
<line>HIS CA 10.50 9.38 5.75 3.79 </line>
<line>GLY CA 8.82 6.59 3.81 </line>
<line>SER CA 5.44 3.81 </line>
<line>ALA CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>LYS CA 301</line>
<line>THR CA 237</line>
<line>TYR CA 291</line>
<line>PHE CA 282</line>
<line>PRO CA 181</line>
<line>HIS CA 157</line>
<line>PHE CA 206</line>
<line>ASP CA 196</line>
<line>LEU CA 254</line>
<line>SER CA 212</line>
<line>HIS CA 199</line>
<line>GLY CA 193</line>
<line>SER CA 210</line>
<line>ALA CA 189</line>
<line>GLN CA 228</line>
</n14>
</entryChain>
<parallel>
<x>-3.8570001125335693</x>
<y>-59.487998962402344</y>
<z>-54.13199996948242</z>
</parallel>
<rotation>
<x>-0.9940000176429749</x>
<y>-0.11100000143051147</y>
<z>0.008999999612569809</z>
<x>-0.09600000083446503</x>
<y>0.8069999814033508</y>
<z>-0.5830000042915344</z>
<x>0.05700000002980232</x>
<y>-0.5799999833106995</y>
<z>-0.8130000233650208</z>
</rotation>
<rmsd>4.0318169593811035</rmsd>
<dmax>9.89764404296875</dmax>
</indel>