NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1LFQA-1RQAB
confEVID 1LFQA-1RQAB
pdbIDA 1LFQ
pdbIDB 1RQA
pdbChainA A
pdbChainB B
identity 0.428600013256073
indelSize 1
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>MHLTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPETQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGG - ----- HHHHHHHHHHHHHHHHHH GGGHHHH HHHHHIIIII HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG --HHHHHHHHHHHHHHH GGGG GGG HHHH HHHHHHHHHHHHHHHHHGGG HHHH HHHHHHHH HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1RQA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1RQAB</entryIDChain>
<sequence>WGKVN--VDEVG</sequence>
<secondary-structure>GGG --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1170 CA TRP B 15 37.824 39.976 3.365 1.00 25.88 C </line>
<line>ATOM 1184 CA GLY B 16 40.281 41.329 5.932 1.00 28.32 C </line>
<line>ATOM 1188 CA LYS B 17 37.321 42.015 8.146 1.00 30.15 C </line>
<line>ATOM 1197 CA VAL B 18 36.023 38.458 8.051 1.00 29.58 C </line>
<line>ATOM 1204 CA ASN B 19 36.300 35.949 10.889 1.00 31.29 C </line>
<line>ATOM 1212 CA VAL B 20 36.871 32.840 8.782 1.00 34.12 C </line>
<line>ATOM 1219 CA ASP B 21 36.272 30.379 11.626 1.00 35.85 C </line>
<line>ATOM 1227 CA GLU B 22 32.785 31.789 12.137 1.00 31.63 C </line>
<line>ATOM 1236 CA VAL B 23 31.809 32.572 8.589 1.00 23.18 C </line>
<line>ATOM 1243 CA GLY B 24 32.879 29.110 7.394 1.00 19.36 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU ASP VAL ASN VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.60 10.88 13.01 12.76 9.01 8.67 5.24 5.22 3.80 </line>
<line>GLY CA 14.36 12.47 13.63 12.98 9.58 8.33 5.56 3.76 </line>
<line>LYS CA 13.67 10.94 11.88 12.19 9.21 6.74 3.79 </line>
<line>VAL CA 9.88 7.26 8.46 8.84 5.73 3.80 </line>
<line>ASN CA 8.41 6.07 5.59 5.62 3.80 </line>
<line>VAL CA 5.64 5.07 5.39 3.81 </line>
<line>ASP CA 5.57 5.83 3.80 </line>
<line>GLU CA 5.45 3.76 </line>
<line>VAL CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 338</line>
<line>GLY CA 230</line>
<line>LYS CA 229</line>
<line>VAL CA 291</line>
<line>ASN CA 248</line>
<line>VAL CA 293</line>
<line>ASP CA 258</line>
<line>GLU CA 286</line>
<line>VAL CA 362</line>
<line>GLY CA 383</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LFQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LFQA</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 93 CA TRP A 14 46.480 21.162 69.545 1.00 27.22 C </line>
<line>ATOM 107 CA GLY A 15 49.285 20.547 71.966 1.00 37.36 C </line>
<line>ATOM 111 CA LYS A 16 48.375 23.891 73.503 1.00 39.57 C </line>
<line>ATOM 120 CA VAL A 17 44.709 22.812 73.615 1.00 38.09 C </line>
<line>ATOM 127 CA GLY A 18 45.856 20.142 76.046 1.00 45.04 C </line>
<line>ATOM 131 CA ALA A 19 43.335 18.759 78.511 1.00 35.50 C </line>
<line>ATOM 136 CA HIS A 20 40.692 21.335 77.606 1.00 38.16 C </line>
<line>ATOM 146 CA ALA A 21 40.354 19.137 74.513 1.00 33.80 C </line>
<line>ATOM 151 CA GLY A 22 37.053 17.523 75.470 1.00 29.28 C </line>
<line>ATOM 155 CA GLU A 23 35.839 20.909 76.772 1.00 32.74 C </line>
<line>ATOM 164 CA TYR A 24 36.436 22.858 73.557 1.00 29.54 C </line>
<line>ATOM 176 CA GLY A 25 34.728 19.953 71.878 1.00 41.72 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.04 10.95 12.87 11.71 8.14 9.93 9.80 6.61 4.74 5.17 3.76 </line>
<line>GLY CA 14.57 13.15 14.28 13.08 9.39 10.31 9.02 5.34 5.37 3.79 </line>
<line>LYS CA 14.30 11.98 13.29 13.14 9.38 9.08 8.76 5.18 3.82 </line>
<line>VAL CA 10.53 8.27 9.61 9.49 5.77 5.85 6.50 3.79 </line>
<line>GLY CA 11.88 10.11 10.07 9.20 5.80 5.52 3.79 </line>
<line>ALA CA 10.93 9.43 7.99 7.09 5.00 3.80 </line>
<line>HIS CA 8.38 6.07 4.94 5.69 3.81 </line>
<line>ALA CA 6.27 5.49 5.35 3.80 </line>
<line>GLY CA 4.92 5.70 3.83 </line>
<line>GLU CA 5.11 3.81 </line>
<line>TYR CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 380</line>
<line>GLY CA 256</line>
<line>LYS CA 248</line>
<line>VAL CA 312</line>
<line>GLY CA 221</line>
<line>ALA CA 193</line>
<line>HIS CA 253</line>
<line>ALA CA 310</line>
<line>GLY CA 283</line>
<line>GLU CA 311</line>
<line>TYR CA 362</line>
<line>GLY CA 397</line>
</n14>
</entryChain>
<parallel>
<x>-6.783999919891357</x>
<y>15.826000213623047</y>
<z>-65.31300354003906</z>
</parallel>
<rotation>
<x>0.5609999895095825</x>
<y>0.8240000009536743</y>
<z>-0.07800000160932541</z>
<x>-0.8270000219345093</x>
<y>0.5609999895095825</y>
<z>-0.027000000700354576</z>
<x>0.020999999716877937</x>
<y>0.07999999821186066</y>
<z>0.996999979019165</z>
</rotation>
<rmsd>1.4882279634475708</rmsd>
<dmax>3.3448801040649414</dmax>
</indel>