NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1LFVB-2RAOC
confEVID 1LFVB-2RAOC
pdbIDA 1LFV
pdbIDB 2RAO
pdbChainA B
pdbChainB C
identity 0.38510000705719
indelSize 2
alignment <alignment>
<seq1>VHLTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPWTQRFFESFG-DLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq1>
<seq2>-VLSPADKTNIKTAWEKIGSHGGEYGAEAVERMFLGFPTTKTYFPHFDFTHGSEQ-------IKAHGKKVSEALTKAVGHLDDLPGALSTLSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPSEFTPAVHASLDKFLANVSTVLTSKYR</seq2>
<ss_1> HHHHHHHHHHGGG -- HHHHHHHHHHHH GGGG - HHHH HHHHHHHHHHHHHHGGG HHHH HHHHHHHH HHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHH GGGG </ss_1>
<ss_2>- HHHHHHHHHHH HHHHHHHHHHHHHHH GGGG HH-------HHHHHHHHHHHHHHHGGGGGGHHHH HHHHIIIIII HHHHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1LFV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1LFVB</entryIDChain>
<sequence>WGKVN--VDEVG</sequence>
<secondary-structure>GGG -- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1176 CA TRP B 15 30.410 46.197 67.873 1.00 57.85 C </line>
<line>ATOM 1190 CA GLY B 16 30.823 49.331 69.967 1.00 81.83 C </line>
<line>ATOM 1194 CA LYS B 17 34.150 48.323 71.482 1.00 29.52 C </line>
<line>ATOM 1203 CA VAL B 18 35.566 47.317 68.069 1.00 44.31 C </line>
<line>ATOM 1210 CA ASN B 19 38.844 48.763 66.781 1.00 44.49 C </line>
<line>ATOM 1218 CA VAL B 20 37.106 49.967 63.589 1.00 62.86 C </line>
<line>ATOM 1225 CA ASP B 21 40.480 50.721 61.970 1.00 94.40 C </line>
<line>ATOM 1233 CA GLU B 22 42.597 47.614 62.668 1.00 47.62 C </line>
<line>ATOM 1242 CA VAL B 23 39.833 44.972 62.687 1.00 44.03 C </line>
<line>ATOM 1249 CA GLY B 24 38.921 45.913 59.120 1.00 42.38 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU ASP VAL ASN VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.21 10.83 13.33 12.52 8.80 8.88 5.28 5.62 3.79 </line>
<line>GLY CA 13.96 12.38 13.96 12.62 8.98 8.65 5.49 3.79 </line>
<line>LYS CA 13.47 10.99 12.23 11.67 8.59 6.66 3.83 </line>
<line>VAL CA 9.66 7.26 8.87 8.54 5.43 3.81 </line>
<line>ASN CA 8.17 5.67 5.69 5.45 3.83 </line>
<line>VAL CA 6.30 5.76 6.04 3.82 </line>
<line>ASP CA 5.80 5.83 3.82 </line>
<line>GLU CA 5.38 3.82 </line>
<line>VAL CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 345</line>
<line>GLY CA 233</line>
<line>LYS CA 216</line>
<line>VAL CA 289</line>
<line>ASN CA 253</line>
<line>VAL CA 270</line>
<line>ASP CA 243</line>
<line>GLU CA 281</line>
<line>VAL CA 356</line>
<line>GLY CA 372</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2RAO</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2RAOC</entryIDChain>
<sequence>WEKIGSHGGEYG</sequence>
<secondary-structure>HHH HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2325 CA TRP C 14 0.013 4.692 27.214 1.00 34.95 C </line>
<line>ATOM 2339 CA GLU C 15 -0.509 5.421 30.967 1.00 41.53 C </line>
<line>ATOM 2348 CA LYS C 16 -1.339 1.731 31.467 1.00 46.48 C </line>
<line>ATOM 2357 CA ILE C 17 1.838 0.546 29.733 1.00 49.86 C </line>
<line>ATOM 2365 CA GLY C 18 3.720 1.995 32.765 1.00 50.74 C </line>
<line>ATOM 2369 CA SER C 19 7.412 1.090 32.936 1.00 50.51 C </line>
<line>ATOM 2375 CA HIS C 20 7.270 -1.959 30.572 1.00 47.16 C </line>
<line>ATOM 2385 CA GLY C 21 7.614 0.066 27.341 1.00 41.95 C </line>
<line>ATOM 2389 CA GLY C 22 11.209 -1.116 26.854 1.00 37.07 C </line>
<line>ATOM 2393 CA GLU C 23 10.281 -4.785 27.222 1.00 31.92 C </line>
<line>ATOM 2402 CA TYR C 24 7.384 -4.478 24.735 1.00 26.80 C </line>
<line>ATOM 2414 CA GLY C 25 9.717 -2.632 22.425 1.00 21.16 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY GLY HIS SER GLY ILE LYS GLU TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 13.07 12.02 13.97 12.62 8.90 10.40 10.02 7.20 5.18 5.36 3.86 </line>
<line>GLU CA 15.57 14.11 15.32 14.03 10.38 10.73 9.24 5.73 5.55 3.82 </line>
<line>LYS CA 14.93 12.65 13.98 13.67 10.00 9.41 8.90 5.23 3.81 </line>
<line>ILE CA 11.21 9.00 10.30 9.94 6.27 6.04 6.45 3.85 </line>
<line>GLY CA 12.82 10.95 10.94 10.04 6.95 5.75 3.81 </line>
<line>SER CA 11.39 9.91 8.68 7.50 5.69 3.86 </line>
<line>HIS CA 8.53 6.36 5.32 5.48 3.83 </line>
<line>GLY CA 5.99 5.24 5.54 3.82 </line>
<line>GLY CA 4.91 5.52 3.80 </line>
<line>GLU CA 5.29 3.83 </line>
<line>TYR CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 364</line>
<line>GLU CA 235</line>
<line>LYS CA 250</line>
<line>ILE CA 313</line>
<line>GLY CA 211</line>
<line>SER CA 201</line>
<line>HIS CA 260</line>
<line>GLY CA 326</line>
<line>GLY CA 291</line>
<line>GLU CA 316</line>
<line>TYR CA 376</line>
<line>GLY CA 408</line>
</n14>
</entryChain>
<parallel>
<x>32.14400100708008</x>
<y>47.459999084472656</y>
<z>37.354000091552734</z>
</parallel>
<rotation>
<x>0.49799999594688416</x>
<y>0.6010000109672546</y>
<z>-0.625</z>
<x>-0.7979999780654907</x>
<y>0.6000000238418579</y>
<z>-0.05900000035762787</z>
<x>0.33899998664855957</x>
<y>0.527999997138977</y>
<z>0.7789999842643738</z>
</rotation>
<rmsd>1.8680959939956665</rmsd>
<dmax>4.09230899810791</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1LFV</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1LFVB</entryIDChain>
<sequence>FESFG-DLSTP</sequence>
<secondary-structure> - H</secondary-structure>
<atom-coordinate>
<line>ATOM 1395 CA PHE B 42 43.849 42.451 44.572 1.00 70.27 C </line>
<line>ATOM 1406 CA GLU B 43 46.917 42.128 42.358 1.00 84.00 C </line>
<line>ATOM 1415 CA SER B 44 47.270 45.905 42.283 1.00 55.69 C </line>
<line>ATOM 1421 CA PHE B 45 47.954 45.950 46.020 1.00 40.87 C </line>
<line>ATOM 1432 CA GLY B 46 51.493 44.614 46.004 1.00 37.99 C </line>
<line>ATOM 1436 CA ASP B 47 53.472 41.717 47.418 1.00 59.03 C </line>
<line>ATOM 1444 CA LEU B 48 51.096 38.974 48.569 1.00 47.44 C </line>
<line>ATOM 1452 CA SER B 49 53.843 36.337 48.457 1.00 63.22 C </line>
<line>ATOM 1458 CA THR B 50 53.796 35.487 52.144 1.00 43.08 C </line>
<line>ATOM 1465 CA PRO B 51 51.254 36.084 54.883 1.00 30.18 C </line>
</atom-coordinate>
<distance-map>
<line> PRO THR SER LEU ASP GLY PHE SER GLU PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 14.20 14.31 12.34 8.98 10.06 8.07 5.58 5.37 3.80 </line>
<line>GLU CA 14.57 13.68 10.90 8.12 8.29 6.36 5.39 3.79 </line>
<line>SER CA 16.46 15.76 13.15 10.11 9.08 5.77 3.80 </line>
<line>PHE CA 13.67 13.46 11.53 8.06 7.09 3.78 </line>
<line>GLY CA 12.31 11.24 8.95 6.21 3.78 </line>
<line>ASP CA 9.61 7.83 5.49 3.81 </line>
<line>LEU CA 6.95 5.68 3.81 </line>
<line>SER CA 6.93 3.78 </line>
<line>THR CA 3.78 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>PHE CA 302</line>
<line>GLU CA 211</line>
<line>SER CA 179</line>
<line>PHE CA 230</line>
<line>GLY CA 200</line>
<line>ASP CA 194</line>
<line>LEU CA 248</line>
<line>SER CA 187</line>
<line>THR CA 170</line>
<line>PRO CA 216</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2RAO</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2RAOC</entryIDChain>
<sequence>FPHFDFTHGSE</sequence>
<secondary-structure> H</secondary-structure>
<atom-coordinate>
<line>ATOM 2555 CA PHE C 43 20.538 -4.372 10.870 1.00 19.66 C </line>
<line>ATOM 2566 CA PRO C 44 23.595 -6.287 9.529 1.00 23.27 C </line>
<line>ATOM 2573 CA HIS C 45 25.530 -5.705 12.762 1.00 26.31 C </line>
<line>ATOM 2583 CA PHE C 46 22.873 -7.089 15.120 1.00 26.75 C </line>
<line>ATOM 2594 CA ASP C 47 23.157 -10.341 17.002 1.00 30.46 C </line>
<line>ATOM 2602 CA PHE C 48 19.682 -11.867 16.472 1.00 31.66 C </line>
<line>ATOM 2613 CA THR C 49 20.122 -14.389 19.264 1.00 37.50 C </line>
<line>ATOM 2620 CA HIS C 50 16.947 -14.471 21.314 1.00 41.21 C </line>
<line>ATOM 2630 CA GLY C 51 17.124 -11.974 24.133 1.00 39.14 C </line>
<line>ATOM 2634 CA SER C 52 20.300 -10.353 22.807 1.00 35.95 C </line>
<line>ATOM 2640 CA GLU C 53 21.439 -7.272 24.748 1.00 36.31 C </line>
</atom-coordinate>
<distance-map>
<line> GLU SER GLY HIS THR PHE ASP PHE HIS PRO PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 14.21 13.35 15.66 14.97 13.08 9.40 8.95 5.56 5.50 3.85 </line>
<line>PRO CA 15.40 14.27 16.96 15.81 13.13 9.73 8.51 5.69 3.81 </line>
<line>HIS CA 12.76 12.24 15.47 14.95 12.12 9.27 6.72 3.81 </line>
<line>PHE CA 9.74 8.74 11.75 11.31 8.83 5.90 3.77 </line>
<line>ASP CA 8.51 6.47 9.48 8.61 5.54 3.83 </line>
<line>PHE CA 9.63 6.54 8.08 6.14 3.79 </line>
<line>THR CA 9.08 5.37 6.21 3.78 </line>
<line>HIS CA 9.15 5.52 3.77 </line>
<line>GLY CA 6.41 3.80 </line>
<line>SER CA 3.82 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>PHE CA 276</line>
<line>PRO CA 178</line>
<line>HIS CA 165</line>
<line>PHE CA 230</line>
<line>ASP CA 203</line>
<line>PHE CA 248</line>
<line>THR CA 193</line>
<line>HIS CA 200</line>
<line>GLY CA 215</line>
<line>SER CA 220</line>
<line>GLU CA 199</line>
</n14>
</entryChain>
<parallel>
<x>28.250999450683594</x>
<y>51.5880012512207</y>
<z>29.461000442504883</z>
</parallel>
<rotation>
<x>0.2809999883174896</x>
<y>0.9459999799728394</y>
<z>-0.1599999964237213</z>
<x>-0.8569999933242798</x>
<y>0.3230000138282776</y>
<z>0.4020000100135803</z>
<x>0.4320000112056732</x>
<y>0.024000000208616257</y>
<z>0.9010000228881836</z>
</rotation>
<rmsd>3.072118043899536</rmsd>
<dmax>4.4406280517578125</dmax>
</indel>