NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1MBQA-2TGDA
confEVID 1MBQA-2TGDA
pdbIDA 1MBQ
pdbIDB 2TGD
pdbChainA A
pdbChainB A
identity 0.654500007629395
indelSize 1
alignment <alignment>
<seq1>IVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPSSCAPAGTMCTVSGWGNTMSS-TADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA--</seq1>
<seq2>-VGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN</seq2>
<ss_1> EEEEEEEEE EEEEE EEEEE GGG EEEEE EEEE EEEEE EEEEE EEEEEEE - EE EEEEEEEE HHHHHHH EEEEE EEE EEEEE EEEEEEEE EEEEEGGG HHHHHHH --</ss_1>
<ss_2>- EEEEEE EEEEEEEEEEEEE GGG EEEEE EEEE EEEEE EEEEE EEEEEEE EEEEEEEE HHHHHHH EEEEE EEEEE EEEEEEEE EEEEE HHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1MBQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1MBQA</entryIDChain>
<sequence>NTMSS-TADKN</sequence>
<secondary-structure> - EE </secondary-structure>
<atom-coordinate>
<line>ATOM 934 CA ASN A 143 26.699 8.553 15.746 1.00 8.42 C </line>
<line>ATOM 942 CA THR A 144 29.098 5.641 15.200 1.00 11.12 C </line>
<line>ATOM 949 CA MET A 145 32.328 7.536 15.925 1.00 19.57 C </line>
<line>ATOM 957 CA SER A 146 33.981 5.368 13.266 1.00 27.45 C </line>
<line>ATOM 963 CA SER A 147 35.346 5.716 9.728 1.00 34.04 C </line>
<line>ATOM 969 CA THR A 148 34.256 2.222 8.713 1.00 34.76 C </line>
<line>ATOM 976 CA ALA A 149 30.774 2.179 10.252 1.00 31.48 C </line>
<line>ATOM 981 CA ASP A 150 28.309 3.894 7.912 1.00 28.21 C </line>
<line>ATOM 989 CA LYS A 152 25.615 5.514 10.062 1.00 23.09 C </line>
<line>ATOM 998 CA ASN A 153 23.179 5.544 7.126 1.00 16.81 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LYS ASP ALA THR SER SER MET THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 9.79 6.54 9.26 9.35 12.11 10.91 8.33 5.72 3.81 </line>
<line>THR CA 10.01 6.21 7.54 6.27 8.97 8.31 5.26 3.81 </line>
<line>MET CA 12.85 9.14 9.68 7.96 9.16 7.13 3.81 </line>
<line>SER CA 12.43 8.96 7.94 5.43 5.54 3.81 </line>
<line>SER CA 12.44 9.74 7.49 5.80 3.80 </line>
<line>THR CA 11.67 9.34 6.23 3.81 </line>
<line>ALA CA 8.88 6.15 3.81 </line>
<line>ASP CA 5.45 3.81 </line>
<line>LYS CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ASN CA 331</line>
<line>THR CA 298</line>
<line>MET CA 216</line>
<line>SER CA 199</line>
<line>SER CA 125</line>
<line>THR CA 142</line>
<line>ALA CA 237</line>
<line>ASP CA 252</line>
<line>LYS CA 335</line>
<line>ASN CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2TGD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2TGDA</entryIDChain>
<sequence>NTKSSGTSYPD</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 891 CA ASN A 143 12.825 36.298 30.339 1.00 50.00 C </line>
<line>ATOM 899 CA THR A 144 9.250 36.651 30.077 1.00 50.00 C </line>
<line>ATOM 906 CA LYS A 145 9.059 40.268 31.103 1.00 50.00 C </line>
<line>ATOM 915 CA SER A 146 8.535 42.828 28.460 1.00 36.00 C </line>
<line>ATOM 921 CA SER A 147 9.445 46.374 29.388 1.00 50.00 C </line>
<line>ATOM 927 CA GLY A 148 12.751 46.775 31.147 1.00 24.00 C </line>
<line>ATOM 931 CA THR A 149 14.400 48.381 28.230 1.00 40.00 C </line>
<line>ATOM 938 CA SER A 150 14.080 46.507 25.313 1.00 32.00 C </line>
<line>ATOM 944 CA TYR A 151 11.934 43.737 23.816 1.00 20.00 C </line>
<line>ATOM 956 CA PRO A 152 10.993 40.397 24.909 1.00 36.00 C </line>
<line>ATOM 963 CA ASP A 153 12.027 40.975 21.282 1.00 4.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP PRO TYR SER THR GLY SER SER LYS THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.22 7.05 9.93 11.45 12.37 10.51 10.67 8.04 5.53 3.60 </line>
<line>THR CA 10.19 6.62 9.83 11.97 12.94 10.77 9.75 6.43 3.76 </line>
<line>LYS CA 10.28 6.49 8.57 9.88 10.13 7.48 6.35 3.72 </line>
<line>SER CA 8.19 4.96 5.83 7.36 8.08 6.37 3.78 </line>
<line>SER CA 10.08 7.63 6.65 6.17 5.47 3.77 </line>
<line>GLY CA 11.47 9.09 7.98 5.99 3.72 </line>
<line>THR CA 10.43 9.29 6.87 3.48 </line>
<line>SER CA 7.15 6.86 3.81 </line>
<line>TYR CA 3.75 3.64 </line>
<line>PRO CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ASN CA 362</line>
<line>THR CA 268</line>
<line>LYS CA 224</line>
<line>SER CA 216</line>
<line>SER CA 170</line>
<line>GLY CA 198</line>
<line>THR CA 186</line>
<line>SER CA 235</line>
<line>TYR CA 275</line>
<line>PRO CA 311</line>
<line>ASP CA 344</line>
</n14>
</entryChain>
<parallel>
<x>20.158000946044922</x>
<y>-37.492000579833984</y>
<z>-16.24799919128418</z>
</parallel>
<rotation>
<x>-0.4359999895095825</x>
<y>-0.8939999938011169</y>
<z>0.10199999809265137</z>
<x>0.7289999723434448</x>
<y>-0.4169999957084656</y>
<z>-0.5429999828338623</z>
<x>0.527999997138977</x>
<y>-0.16200000047683716</y>
<z>0.8330000042915344</z>
</rotation>
<rmsd>2.446012020111084</rmsd>
<dmax>3.7325029373168945</dmax>
</indel>