NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1MRUA-2BROA
confEVID 1MRUA-2BROA
pdbIDA 1MRU
pdbIDB 2BRO
pdbChainA A
pdbChainB A
identity 0.231600001454353
indelSize 3
alignment <alignment>
<seq1>TPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI--------------TAQYLSPEQARGDSVD-ARSDVYSLGCVLYEVLTGEPPFT--GDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPK-</seq1>
<seq2>-AVPFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRC-----PENIKKEICINKMLNHENVVKFY--GHRRE--GNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN---PWKKIDSAPLALLHKILVENPSARI-TIPDIKK-DRWYNKPLKKGAKRP</seq2>
<ss_1> EEE EEEEEEEEE EEEEEEEEEEE HHHHHHHHHHHHH EEEEEEE EEEEEEEEEEEEEEEEHHHHHH HHHHHHHHHHHHHHHHHH EEE EEEEE EEEEE -------------- -HHHHHHHHHHHHHHHHH -- HHHHHH HHHHHHHHHH HHHH HHHHHHHHHHHH -</ss_1>
<ss_2>- EEE EEEEEEEEE EEEEEEEE ----- HHHHHHH --EEEEE--EEEEEEEE GGGG HHHHHHHHHHHHHHHHHHH EEEEE EEEE EEEEE HHHHHHHHHHHHHHHHH HHHHHHH --- HHHHHHHHHHHHHH HHHH - HHHGGG- HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1MRU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1MRUA</entryIDChain>
<sequence>GDSVD-ARSDV</sequence>
<secondary-structure> -HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1335 CA GLY A 190 5.366 3.159 3.291 1.00 77.69 C </line>
<line>ATOM 1339 CA ASP A 191 8.983 1.924 3.115 1.00 75.91 C </line>
<line>ATOM 1347 CA SER A 192 11.785 2.355 5.647 1.00 72.86 C </line>
<line>ATOM 1353 CA VAL A 193 11.621 5.839 7.261 1.00 66.62 C </line>
<line>ATOM 1360 CA ASP A 194 14.605 6.674 9.460 1.00 58.90 C </line>
<line>ATOM 1368 CA ALA A 195 17.331 9.165 10.258 1.00 53.86 C </line>
<line>ATOM 1373 CA ARG A 196 18.511 9.308 6.696 1.00 52.70 C </line>
<line>ATOM 1384 CA SER A 197 15.003 10.143 5.476 1.00 49.25 C </line>
<line>ATOM 1390 CA ASP A 198 15.196 13.470 7.334 1.00 46.86 C </line>
<line>ATOM 1398 CA VAL A 199 18.705 13.789 5.984 1.00 46.64 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP SER ARG ALA ASP VAL SER ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 17.27 14.81 12.10 14.91 15.09 11.65 7.88 6.88 3.83 </line>
<line>ASP CA 15.61 13.77 10.46 12.57 13.16 9.72 6.28 3.80 </line>
<line>SER CA 13.37 11.75 8.43 9.73 9.92 6.41 3.84 </line>
<line>VAL CA 10.72 8.43 5.76 7.73 7.26 3.80 </line>
<line>ASP CA 8.92 7.15 5.30 5.46 3.78 </line>
<line>ALA CA 6.44 5.63 5.41 3.76 </line>
<line>ARG CA 4.54 5.36 3.81 </line>
<line>SER CA 5.22 3.82 </line>
<line>ASP CA 3.77 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 162</line>
<line>ASP CA 190</line>
<line>SER CA 238</line>
<line>VAL CA 313</line>
<line>ASP CA 358</line>
<line>ALA CA 417</line>
<line>ARG CA 420</line>
<line>SER CA 476</line>
<line>ASP CA 549</line>
<line>VAL CA 515</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2BRO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BROA</entryIDChain>
<sequence>RREFHAEPVDV</sequence>
<secondary-structure> HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1411 CA ARG A 181 14.402 -8.077 -12.930 1.00 44.42 C </line>
<line>ATOM 1422 CA ARG A 182 17.708 -9.384 -11.578 1.00 44.20 C </line>
<line>ATOM 1433 CA GLU A 183 18.516 -5.976 -10.050 1.00 38.23 C </line>
<line>ATOM 1442 CA PHE A 184 16.260 -3.000 -9.380 1.00 30.85 C </line>
<line>ATOM 1453 CA HIS A 185 16.162 0.352 -7.447 1.00 26.41 C </line>
<line>ATOM 1463 CA ALA A 186 15.010 0.206 -3.768 1.00 24.01 C </line>
<line>ATOM 1468 CA GLU A 187 12.863 3.340 -3.463 1.00 24.21 C </line>
<line>ATOM 1477 CA PRO A 188 10.205 2.669 -6.161 1.00 22.76 C </line>
<line>ATOM 1484 CA VAL A 189 9.593 -0.666 -4.492 1.00 23.47 C </line>
<line>ATOM 1491 CA ASP A 190 8.771 1.003 -1.213 1.00 24.18 C </line>
<line>ATOM 1499 CA VAL A 191 6.531 3.455 -3.019 1.00 23.78 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP VAL PRO GLU ALA HIS PHE GLU ARG ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 17.12 15.86 12.22 13.38 14.91 12.37 10.21 6.47 5.44 3.80 </line>
<line>ARG CA 19.05 17.18 13.86 15.20 15.85 12.66 10.69 6.91 3.82 </line>
<line>GLU CA 16.79 14.89 11.78 12.61 12.73 9.49 7.24 3.79 </line>
<line>PHE CA 13.30 11.78 8.59 8.90 9.31 6.58 3.87 </line>
<line>HIS CA 11.04 9.69 7.27 6.52 5.97 3.86 </line>
<line>ALA CA 9.11 6.79 5.53 5.91 3.81 </line>
<line>GLU CA 6.35 5.22 5.27 3.85 </line>
<line>PRO CA 4.90 5.41 3.78 </line>
<line>VAL CA 5.34 3.77 </line>
<line>ASP CA 3.78 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 236</line>
<line>ARG CA 172</line>
<line>GLU CA 235</line>
<line>PHE CA 321</line>
<line>HIS CA 379</line>
<line>ALA CA 446</line>
<line>GLU CA 470</line>
<line>PRO CA 457</line>
<line>VAL CA 534</line>
<line>ASP CA 562</line>
<line>VAL CA 532</line>
</n14>
</entryChain>
<parallel>
<x>-1.562999963760376</x>
<y>8.663999557495117</y>
<z>14.588000297546387</z>
</parallel>
<rotation>
<x>-0.007000000216066837</x>
<y>-0.878000020980835</y>
<z>0.4790000021457672</z>
<x>0.29499998688697815</x>
<y>0.4560000002384186</y>
<z>0.8399999737739563</z>
<x>0.9549999833106995</x>
<y>-0.1469999998807907</y>
<z>-0.25600001215934753</z>
</rotation>
<rmsd>2.1345419883728027</rmsd>
<dmax>3.6877129077911377</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2BRO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BROA</entryIDChain>
<sequence>GHRRE--GNIQY</sequence>
<secondary-structure>EEEEE--EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 523 CA GLY A 72 18.475 -1.373 23.352 1.00 57.02 C </line>
<line>ATOM 527 CA HIS A 73 19.114 -5.112 23.260 1.00 63.50 C </line>
<line>ATOM 537 CA ARG A 74 20.033 -8.122 25.429 1.00 70.69 C </line>
<line>ATOM 548 CA ARG A 75 22.292 -11.102 24.714 1.00 75.85 C </line>
<line>ATOM 559 CA GLU A 76 21.300 -13.299 27.691 1.00 77.48 C </line>
<line>ATOM 568 CA GLY A 77 22.915 -16.491 26.373 1.00 77.67 C </line>
<line>ATOM 572 CA ASN A 78 21.162 -17.701 23.206 1.00 76.85 C </line>
<line>ATOM 580 CA ILE A 79 18.110 -15.351 23.314 1.00 74.53 C </line>
<line>ATOM 588 CA GLN A 80 18.143 -11.810 21.854 1.00 69.47 C </line>
<line>ATOM 597 CA TYR A 81 15.818 -9.221 23.406 1.00 64.41 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ILE ASN GLY GLU ARG ARG HIS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 8.29 10.55 13.98 16.55 16.04 13.00 10.54 7.23 3.79 </line>
<line>HIS CA 5.27 6.91 10.29 12.75 12.39 9.56 6.93 3.82 </line>
<line>ARG CA 4.80 5.47 7.77 9.90 8.90 5.79 3.81 </line>
<line>ARG CA 6.87 5.09 6.12 6.86 5.67 3.83 </line>
<line>GLU CA 8.06 6.80 5.79 6.29 3.81 </line>
<line>GLY CA 10.58 8.07 5.81 3.82 </line>
<line>ASN CA 10.03 6.76 3.85 </line>
<line>ILE CA 6.55 3.83 </line>
<line>GLN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>GLY CA 321</line>
<line>HIS CA 324</line>
<line>ARG CA 286</line>
<line>ARG CA 215</line>
<line>GLU CA 176</line>
<line>GLY CA 136</line>
<line>ASN CA 163</line>
<line>ILE CA 241</line>
<line>GLN CA 315</line>
<line>TYR CA 374</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1MRU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1MRUA</entryIDChain>
<sequence>GEAETPAGPLPY</sequence>
<secondary-structure>EEEEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 599 CA GLY A 78 -4.445 20.810 28.119 1.00 56.11 C </line>
<line>ATOM 603 CA GLU A 79 -7.862 21.621 26.746 1.00 61.02 C </line>
<line>ATOM 612 CA ALA A 80 -10.502 24.186 27.596 1.00 66.19 C </line>
<line>ATOM 617 CA GLU A 81 -14.189 23.330 27.706 1.00 73.07 C </line>
<line>ATOM 626 CA THR A 82 -16.480 24.781 24.995 1.00 74.55 C </line>
<line>ATOM 633 CA PRO A 83 -20.023 24.099 23.667 1.00 75.31 C </line>
<line>ATOM 640 CA ALA A 84 -19.007 21.400 21.124 1.00 74.44 C </line>
<line>ATOM 645 CA GLY A 85 -16.667 19.802 23.654 1.00 71.12 C </line>
<line>ATOM 649 CA PRO A 86 -12.941 19.648 24.448 1.00 67.21 C </line>
<line>ATOM 656 CA LEU A 87 -10.407 21.937 22.732 1.00 61.46 C </line>
<line>ATOM 664 CA PRO A 88 -6.867 20.465 23.038 1.00 55.94 C </line>
<line>ATOM 671 CA TYR A 89 -4.251 23.183 23.036 1.00 51.83 C </line>
</atom-coordinate>
<distance-map>
<line> TYR PRO LEU PRO GLY ALA PRO THR GLU ALA GLU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.61 5.64 8.11 9.33 13.05 16.17 16.53 13.05 10.07 6.95 3.77 </line>
<line>GLU CA 5.41 4.01 4.76 5.91 9.51 12.48 12.79 9.34 6.62 3.78 </line>
<line>ALA CA 7.80 6.92 5.36 6.04 8.53 11.04 10.30 6.55 3.79 </line>
<line>GLU CA 10.98 9.14 6.40 5.07 5.92 8.38 7.14 3.83 </line>
<line>THR CA 12.49 10.72 7.08 6.26 5.16 5.73 3.84 </line>
<line>PRO CA 15.81 13.66 9.90 8.40 5.45 3.84 </line>
<line>ALA CA 14.99 12.33 8.77 7.14 3.80 </line>
<line>GLY CA 12.88 9.84 6.68 3.81 </line>
<line>PRO CA 9.49 6.29 3.82 </line>
<line>LEU CA 6.29 3.85 </line>
<line>PRO CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>GLY CA 327</line>
<line>GLU CA 346</line>
<line>ALA CA 290</line>
<line>GLU CA 211</line>
<line>THR CA 193</line>
<line>PRO CA 123</line>
<line>ALA CA 153</line>
<line>GLY CA 191</line>
<line>PRO CA 260</line>
<line>LEU CA 352</line>
<line>PRO CA 406</line>
<line>TYR CA 456</line>
</n14>
</entryChain>
<parallel>
<x>32.11199951171875</x>
<y>-33.08300018310547</y>
<z>-1.0820000171661377</z>
</parallel>
<rotation>
<x>-0.5860000252723694</x>
<y>0.7260000109672546</y>
<z>-0.35899999737739563</z>
<x>-0.33799999952316284</x>
<y>0.18299999833106995</y>
<z>0.9229999780654907</z>
<x>0.7360000014305115</x>
<y>0.6620000004768372</y>
<z>0.1379999965429306</z>
</rotation>
<rmsd>2.889327049255371</rmsd>
<dmax>4.451066017150879</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2BRO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BROA</entryIDChain>
<sequence>KTYLN---PWKKI</sequence>
<secondary-structure> --- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1769 CA LYS A 225 -10.759 -1.706 -15.852 1.00 40.34 C </line>
<line>ATOM 1778 CA THR A 226 -11.478 0.484 -12.812 1.00 40.18 C </line>
<line>ATOM 1785 CA TYR A 227 -15.136 -0.560 -12.895 1.00 39.04 C </line>
<line>ATOM 1797 CA LEU A 228 -14.057 -3.702 -11.095 1.00 35.76 C </line>
<line>ATOM 1805 CA ASN A 229 -13.240 -4.154 -7.427 1.00 34.39 C </line>
<line>ATOM 1813 CA PRO A 230 -11.432 -2.932 -5.553 1.00 31.02 C </line>
<line>ATOM 1820 CA TRP A 231 -11.079 0.219 -7.638 1.00 28.63 C </line>
<line>ATOM 1834 CA LYS A 232 -14.766 0.878 -7.869 1.00 33.01 C </line>
<line>ATOM 1843 CA LYS A 233 -14.954 1.418 -4.118 1.00 30.75 C </line>
<line>ATOM 1852 CA ILE A 234 -12.326 4.182 -4.139 1.00 32.15 C </line>
</atom-coordinate>
<distance-map>
<line> ILE LYS LYS TRP PRO ASN LEU TYR THR LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.20 12.85 9.30 8.44 10.39 9.12 6.12 5.41 3.82 </line>
<line>THR CA 9.47 9.41 5.95 5.20 8.02 7.32 5.21 3.80 </line>
<line>TYR CA 10.35 9.00 5.24 6.69 8.56 6.81 3.78 </line>
<line>LEU CA 10.66 8.70 5.65 6.02 6.18 3.78 </line>
<line>ASN CA 9.01 6.70 5.28 4.88 2.88 </line>
<line>PRO CA 7.31 5.78 5.57 3.79 </line>
<line>TRP CA 5.43 5.37 3.75 </line>
<line>LYS CA 5.55 3.79 </line>
<line>LYS CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LYS CA 233</line>
<line>THR CA 285</line>
<line>TYR CA 209</line>
<line>LEU CA 248</line>
<line>ASN CA 295</line>
<line>PRO CA 361</line>
<line>TRP CA 375</line>
<line>LYS CA 270</line>
<line>LYS CA 290</line>
<line>ILE CA 366</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1MRU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1MRUA</entryIDChain>
<sequence>EDPIPPSARHEGL</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1643 CA GLU A 231 15.801 11.166 -11.584 1.00 54.29 C </line>
<line>ATOM 1652 CA ASP A 232 19.034 12.804 -10.487 1.00 55.54 C </line>
<line>ATOM 1660 CA PRO A 233 18.646 16.284 -8.977 1.00 54.09 C </line>
<line>ATOM 1667 CA ILE A 234 19.833 18.850 -11.536 1.00 53.26 C </line>
<line>ATOM 1675 CA PRO A 235 23.099 20.110 -9.971 1.00 55.70 C </line>
<line>ATOM 1682 CA PRO A 236 22.555 23.346 -7.953 1.00 57.68 C </line>
<line>ATOM 1689 CA SER A 237 25.098 25.216 -10.085 1.00 62.58 C </line>
<line>ATOM 1695 CA ALA A 238 23.215 24.316 -13.282 1.00 67.16 C </line>
<line>ATOM 1700 CA ARG A 239 20.016 25.533 -11.594 1.00 70.81 C </line>
<line>ATOM 1711 CA HIS A 240 21.239 28.818 -10.111 1.00 71.64 C </line>
<line>ATOM 1721 CA GLU A 241 24.046 31.363 -10.309 1.00 75.58 C </line>
<line>ATOM 1730 CA GLY A 242 26.661 31.734 -7.546 1.00 73.25 C </line>
<line>ATOM 1734 CA LEU A 243 26.845 28.090 -6.655 1.00 70.30 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLY GLU HIS ARG ALA SER PRO PRO ILE PRO ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 20.80 23.61 21.85 18.53 14.97 15.19 16.91 14.39 11.66 8.68 6.41 3.79 </line>
<line>ASP CA 17.59 20.62 19.22 16.17 12.81 12.56 13.82 11.40 8.38 6.19 3.81 </line>
<line>PRO CA 14.56 17.46 16.07 12.85 9.71 10.19 11.07 8.14 5.95 3.81 </line>
<line>ILE CA 12.58 15.12 13.26 10.17 6.69 6.66 8.39 6.36 3.83 </line>
<line>PRO CA 9.42 12.40 11.30 8.91 6.45 5.35 5.48 3.85 </line>
<line>PRO CA 6.53 9.35 8.49 6.03 4.95 5.46 3.81 </line>
<line>SER CA 4.80 7.17 6.24 5.28 5.31 3.82 </line>
<line>ALA CA 8.45 9.99 7.69 5.85 3.82 </line>
<line>ARG CA 8.81 9.95 7.20 3.81 </line>
<line>HIS CA 6.63 6.67 3.79 </line>
<line>GLU CA 5.65 3.82 </line>
<line>GLY CA 3.76 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLU CA 246</line>
<line>ASP CA 304</line>
<line>PRO CA 393</line>
<line>ILE CA 314</line>
<line>PRO CA 324</line>
<line>PRO CA 349</line>
<line>SER CA 261</line>
<line>ALA CA 214</line>
<line>ARG CA 256</line>
<line>HIS CA 250</line>
<line>GLU CA 197</line>
<line>GLY CA 213</line>
<line>LEU CA 285</line>
</n14>
</entryChain>
<parallel>
<x>-32.95800018310547</x>
<y>-22.049999237060547</y>
<z>0.42899999022483826</z>
</parallel>
<rotation>
<x>-0.7609999775886536</x>
<y>-0.578000009059906</y>
<z>0.2939999997615814</z>
<x>0.12999999523162842</x>
<y>0.30799999833106995</y>
<z>0.9419999718666077</z>
<x>-0.6349999904632568</x>
<y>0.7549999952316284</y>
<z>-0.1599999964237213</z>
</rotation>
<rmsd>5.081727981567383</rmsd>
<dmax>9.002182006835938</dmax>
</indel>