NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2D3PA
confEVID 1ONAD-2D3PA
pdbIDA 1ONA
pdbIDB 2D3P
pdbChainA D
pdbChainB A
identity 0.797500014305115
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT------NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPNYQHIGINIKSIRSKATTRWNVQDGKVGTAHISYNSVAKRLSAIVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLYKETNTILSWSFTSKLKTNSTADAQSLHFTFNQFSQNPKDLILQGDASTDSDGNLQLTRVS-NGSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEE EEEEEE EEEEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEEEEEE EEEEEEE EEEEE EEE EEE EEE- EEEEEE EEEEEEEEEEEEE EEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2D3P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2D3PA</entryIDChain>
<sequence>LTRVS-NGSPQ</sequence>
<secondary-structure> EEE- </secondary-structure>
<atom-coordinate>
<line>ATOM 1191 CA LEU A 156 4.817 5.063 48.549 1.00 15.87 C </line>
<line>ATOM 1199 CA THR A 157 8.365 5.603 47.402 1.00 18.13 C </line>
<line>ATOM 1206 CA ARG A 158 9.665 7.202 44.192 1.00 24.83 C </line>
<line>ATOM 1217 CA VAL A 159 9.684 4.965 41.111 1.00 29.65 C </line>
<line>ATOM 1224 CA SER A 160 10.819 6.202 37.705 1.00 35.14 C </line>
<line>ATOM 1230 CA ASN A 161 9.110 4.265 34.900 1.00 39.28 C </line>
<line>ATOM 1238 CA GLY A 162 9.016 0.672 36.437 1.00 40.36 C </line>
<line>ATOM 1242 CA SER A 163 12.127 1.435 38.462 1.00 38.97 C </line>
<line>ATOM 1248 CA PRO A 164 12.710 2.213 42.188 1.00 37.29 C </line>
<line>ATOM 1255 CA GLN A 165 14.605 5.384 43.185 1.00 36.83 C </line>
</atom-coordinate>
<distance-map>
<line> GLN PRO SER GLY ASN SER VAL ARG THR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.17 10.53 12.97 13.55 14.33 12.45 8.89 6.86 3.77 </line>
<line>THR CA 7.53 7.59 10.56 12.04 12.60 10.02 6.46 3.81 </line>
<line>ARG CA 5.36 6.18 8.49 10.16 9.76 6.66 3.81 </line>
<line>VAL CA 5.36 4.23 5.04 6.38 6.28 3.80 </line>
<line>SER CA 6.71 6.29 5.00 5.95 3.81 </line>
<line>ASN CA 10.00 8.38 5.46 3.91 </line>
<line>GLY CA 9.95 7.01 3.79 </line>
<line>SER CA 6.64 3.85 </line>
<line>PRO CA 3.83 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>LEU CA 515</line>
<line>THR CA 442</line>
<line>ARG CA 336</line>
<line>VAL CA 313</line>
<line>SER CA 214</line>
<line>ASN CA 178</line>
<line>GLY CA 226</line>
<line>SER CA 253</line>
<line>PRO CA 335</line>
<line>GLN CA 293</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>LTRVSSNGSPQ</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6421 CA LEU D 156 7.235 19.193 51.214 1.00 13.67 C </line>
<line>ATOM 6429 CA THR D 157 8.362 22.129 53.360 1.00 17.83 C </line>
<line>ATOM 6436 CA ARG D 158 6.660 25.139 54.986 1.00 26.91 C </line>
<line>ATOM 6447 CA VAL D 159 5.254 27.835 52.742 1.00 31.86 C </line>
<line>ATOM 6454 CA SER D 160 3.394 30.807 54.143 1.00 53.44 C </line>
<line>ATOM 6460 CA SER D 161 0.140 32.328 52.723 1.00 69.30 C </line>
<line>ATOM 6466 CA ASN D 162 2.060 34.897 50.602 1.00 69.05 C </line>
<line>ATOM 6474 CA GLY D 163 3.748 31.901 48.986 1.00 55.35 C </line>
<line>ATOM 6478 CA SER D 164 7.073 32.341 50.820 1.00 45.00 C </line>
<line>ATOM 6484 CA PRO D 165 9.178 29.417 51.992 1.00 30.03 C </line>
<line>ATOM 6491 CA GLN D 166 10.196 29.119 55.619 1.00 15.78 C </line>
</atom-coordinate>
<distance-map>
<line> GLN PRO SER GLY ASN SER SER VAL ARG THR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.26 10.44 13.15 13.36 16.55 15.00 12.58 9.00 7.06 3.81 </line>
<line>THR CA 7.57 7.46 10.60 11.66 14.50 13.12 10.03 6.53 3.82 </line>
<line>ARG CA 5.36 5.80 8.33 9.50 11.64 9.97 6.60 3.78 </line>
<line>VAL CA 5.86 4.30 5.23 5.74 8.04 6.81 3.78 </line>
<line>SER CA 7.16 6.33 5.19 5.28 5.57 3.86 </line>
<line>SER CA 10.95 9.52 7.19 5.21 3.85 </line>
<line>ASN CA 11.17 9.09 5.63 3.80 </line>
<line>GLY CA 9.66 6.69 3.82 </line>
<line>SER CA 6.57 3.79 </line>
<line>PRO CA 3.78 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>LEU CA 521</line>
<line>THR CA 445</line>
<line>ARG CA 355</line>
<line>VAL CA 309</line>
<line>SER CA 203</line>
<line>SER CA 136</line>
<line>ASN CA 121</line>
<line>GLY CA 221</line>
<line>SER CA 252</line>
<line>PRO CA 335</line>
<line>GLN CA 300</line>
</n14>
</entryChain>
<parallel>
<x>3.7269999980926514</x>
<y>-23.604000091552734</y>
<z>-11.01200008392334</z>
</parallel>
<rotation>
<x>0.6499999761581421</x>
<y>-0.460999995470047</y>
<z>0.6050000190734863</z>
<x>0.5640000104904175</x>
<y>-0.2409999966621399</y>
<z>-0.7900000214576721</z>
<x>0.5090000033378601</x>
<y>0.8539999723434448</y>
<z>0.10400000214576721</z>
</rotation>
<rmsd>0.897163987159729</rmsd>
<dmax>2.1234560012817383</dmax>
</indel>