NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2D3PB
confEVID 1ONAD-2D3PB
pdbIDA 1ONA
pdbIDB 2D3P
pdbChainA D
pdbChainB B
identity 0.793200016021729
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT------NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPNYQHIGINIKSIRSKATTRWNVQDGKVGTAHISYNSVAKRLSAIVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLYKETNTILSWSFTSKLKTNSTADAQSLHFTFNQFSQNPKDLILQGDASTDSDGNLQLTRVSN-GSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEEE EEEEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEEEE EEEEEEE EEEEE EEE EEE EEE - EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2D3P</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2D3PB</entryIDChain>
<sequence>TRVSN-GSPQS</sequence>
<secondary-structure> EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2994 CA THR B 157 -28.453 24.810 65.358 1.00 17.48 C </line>
<line>ATOM 3001 CA ARG B 158 -28.091 26.813 68.649 1.00 22.70 C </line>
<line>ATOM 3012 CA VAL B 159 -29.718 25.521 71.802 1.00 25.08 C </line>
<line>ATOM 3019 CA SER B 160 -29.539 27.365 75.182 1.00 28.09 C </line>
<line>ATOM 3025 CA ASN B 161 -30.336 25.220 78.233 1.00 30.74 C </line>
<line>ATOM 3033 CA GLY B 162 -32.195 22.712 75.981 1.00 28.56 C </line>
<line>ATOM 3037 CA SER B 163 -34.078 25.650 74.384 1.00 24.20 C </line>
<line>ATOM 3043 CA PRO B 164 -33.655 26.522 70.653 1.00 20.13 C </line>
<line>ATOM 3050 CA GLN B 165 -32.663 29.990 69.330 1.00 17.92 C </line>
<line>ATOM 3059 CA SER B 166 -33.685 32.181 66.391 1.00 16.33 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLN PRO SER GLY ASN SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 9.10 7.77 7.62 10.67 11.46 13.02 10.21 6.61 3.87 </line>
<line>ARG CA 8.08 5.61 5.92 8.37 9.35 9.97 6.71 3.78 </line>
<line>VAL CA 9.45 5.90 4.22 5.07 5.61 6.47 3.85 </line>
<line>SER CA 10.85 7.13 6.18 4.92 5.42 3.81 </line>
<line>ASN CA 14.14 10.36 8.38 5.39 3.85 </line>
<line>GLY CA 13.56 9.87 6.71 3.84 </line>
<line>SER CA 10.33 6.81 3.85 </line>
<line>PRO CA 7.08 3.84 </line>
<line>GLN CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 436</line>
<line>ARG CA 336</line>
<line>VAL CA 309</line>
<line>SER CA 207</line>
<line>ASN CA 160</line>
<line>GLY CA 235</line>
<line>SER CA 253</line>
<line>PRO CA 329</line>
<line>GLN CA 290</line>
<line>SER CA 282</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>TRVSSNGSPQG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6429 CA THR D 157 8.362 22.129 53.360 1.00 17.83 C </line>
<line>ATOM 6436 CA ARG D 158 6.660 25.139 54.986 1.00 26.91 C </line>
<line>ATOM 6447 CA VAL D 159 5.254 27.835 52.742 1.00 31.86 C </line>
<line>ATOM 6454 CA SER D 160 3.394 30.807 54.143 1.00 53.44 C </line>
<line>ATOM 6460 CA SER D 161 0.140 32.328 52.723 1.00 69.30 C </line>
<line>ATOM 6466 CA ASN D 162 2.060 34.897 50.602 1.00 69.05 C </line>
<line>ATOM 6474 CA GLY D 163 3.748 31.901 48.986 1.00 55.35 C </line>
<line>ATOM 6478 CA SER D 164 7.073 32.341 50.820 1.00 45.00 C </line>
<line>ATOM 6484 CA PRO D 165 9.178 29.417 51.992 1.00 30.03 C </line>
<line>ATOM 6491 CA GLN D 166 10.196 29.119 55.619 1.00 15.78 C </line>
<line>ATOM 6496 CA GLY D 167 13.653 28.143 56.771 1.00 10.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLN PRO SER GLY ASN SER SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.71 7.57 7.46 10.60 11.66 14.50 13.12 10.03 6.53 3.82 </line>
<line>ARG CA 7.82 5.36 5.80 8.33 9.50 11.64 9.97 6.60 3.78 </line>
<line>VAL CA 9.32 5.86 4.30 5.23 5.74 8.04 6.81 3.78 </line>
<line>SER CA 10.92 7.16 6.33 5.19 5.28 5.57 3.86 </line>
<line>SER CA 14.71 10.95 9.52 7.19 5.21 3.85 </line>
<line>ASN CA 14.77 11.17 9.09 5.63 3.80 </line>
<line>GLY CA 13.15 9.66 6.69 3.82 </line>
<line>SER CA 9.81 6.57 3.79 </line>
<line>PRO CA 6.67 3.78 </line>
<line>GLN CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 445</line>
<line>ARG CA 355</line>
<line>VAL CA 309</line>
<line>SER CA 203</line>
<line>SER CA 136</line>
<line>ASN CA 121</line>
<line>GLY CA 221</line>
<line>SER CA 252</line>
<line>PRO CA 335</line>
<line>GLN CA 300</line>
<line>GLY CA 312</line>
</n14>
</entryChain>
<parallel>
<x>-36.23400115966797</x>
<y>-3.4110000133514404</y>
<z>20.06100082397461</z>
</parallel>
<rotation>
<x>-0.6779999732971191</x>
<y>0.2840000092983246</y>
<z>-0.6779999732971191</z>
<x>-0.597000002861023</x>
<y>0.32499998807907104</y>
<z>0.7329999804496765</z>
<x>0.42800000309944153</x>
<y>0.9020000100135803</y>
<z>-0.050999999046325684</z>
</rotation>
<rmsd>0.6181190013885498</rmsd>
<dmax>1.3640309572219849</dmax>
</indel>