NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2D3PD
confEVID 1ONAD-2D3PD
pdbIDA 1ONA
pdbIDB 2D3P
pdbChainA D
pdbChainB D
identity 0.793200016021729
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT------NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPNYQHIGINIKSIRSKATTRWNVQDGKVGTAHISYNSVAKRLSAIVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLYKETNTILSWSFTSKLKTNSTADAQSLHFTFNQFSQNPKDLILQGDASTDSDGNLQLTRVSN-GSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEEE EEEEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEE EEEEEEEEEEEEE EEEEEEE EEEEE EEE EEE EEE - EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2D3P</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2D3PD</entryIDChain>
<sequence>TRVSN-GSPQS</sequence>
<secondary-structure> EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 6584 CA THR D 157 -36.074 -20.295 78.279 1.00 26.16 C </line>
<line>ATOM 6591 CA ARG D 158 -39.795 -20.842 79.216 1.00 32.17 C </line>
<line>ATOM 6602 CA VAL D 159 -41.853 -17.820 80.295 1.00 36.15 C </line>
<line>ATOM 6609 CA SER D 160 -45.502 -18.098 81.419 1.00 40.84 C </line>
<line>ATOM 6615 CA ASN D 161 -47.221 -14.755 81.120 1.00 44.38 C </line>
<line>ATOM 6623 CA GLY D 162 -44.272 -12.622 82.285 1.00 44.46 C </line>
<line>ATOM 6627 CA SER D 163 -42.828 -15.128 84.767 1.00 42.98 C </line>
<line>ATOM 6633 CA PRO D 164 -39.917 -17.563 84.038 1.00 40.65 C </line>
<line>ATOM 6640 CA GLN D 165 -40.155 -21.314 84.710 1.00 39.12 C </line>
<line>ATOM 6649 CA SER D 166 -37.871 -24.008 86.149 1.00 37.35 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLN PRO SER GLY ASN SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.89 7.68 7.44 10.70 11.92 12.77 10.18 6.60 3.88 </line>
<line>ARG CA 7.86 5.53 5.83 8.52 9.85 9.79 6.70 3.81 </line>
<line>VAL CA 9.40 5.88 4.22 5.31 6.07 6.24 3.83 </line>
<line>SER CA 10.75 7.05 6.19 5.21 5.68 3.77 </line>
<line>ASN CA 14.08 10.29 8.35 5.72 3.82 </line>
<line>GLY CA 13.62 9.92 6.82 3.81 </line>
<line>SER CA 10.26 6.74 3.86 </line>
<line>PRO CA 7.08 3.82 </line>
<line>GLN CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 442</line>
<line>ARG CA 342</line>
<line>VAL CA 309</line>
<line>SER CA 204</line>
<line>ASN CA 159</line>
<line>GLY CA 216</line>
<line>SER CA 244</line>
<line>PRO CA 331</line>
<line>GLN CA 295</line>
<line>SER CA 296</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>TRVSSNGSPQG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6429 CA THR D 157 8.362 22.129 53.360 1.00 17.83 C </line>
<line>ATOM 6436 CA ARG D 158 6.660 25.139 54.986 1.00 26.91 C </line>
<line>ATOM 6447 CA VAL D 159 5.254 27.835 52.742 1.00 31.86 C </line>
<line>ATOM 6454 CA SER D 160 3.394 30.807 54.143 1.00 53.44 C </line>
<line>ATOM 6460 CA SER D 161 0.140 32.328 52.723 1.00 69.30 C </line>
<line>ATOM 6466 CA ASN D 162 2.060 34.897 50.602 1.00 69.05 C </line>
<line>ATOM 6474 CA GLY D 163 3.748 31.901 48.986 1.00 55.35 C </line>
<line>ATOM 6478 CA SER D 164 7.073 32.341 50.820 1.00 45.00 C </line>
<line>ATOM 6484 CA PRO D 165 9.178 29.417 51.992 1.00 30.03 C </line>
<line>ATOM 6491 CA GLN D 166 10.196 29.119 55.619 1.00 15.78 C </line>
<line>ATOM 6496 CA GLY D 167 13.653 28.143 56.771 1.00 10.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLN PRO SER GLY ASN SER SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.71 7.57 7.46 10.60 11.66 14.50 13.12 10.03 6.53 3.82 </line>
<line>ARG CA 7.82 5.36 5.80 8.33 9.50 11.64 9.97 6.60 3.78 </line>
<line>VAL CA 9.32 5.86 4.30 5.23 5.74 8.04 6.81 3.78 </line>
<line>SER CA 10.92 7.16 6.33 5.19 5.28 5.57 3.86 </line>
<line>SER CA 14.71 10.95 9.52 7.19 5.21 3.85 </line>
<line>ASN CA 14.77 11.17 9.09 5.63 3.80 </line>
<line>GLY CA 13.15 9.66 6.69 3.82 </line>
<line>SER CA 9.81 6.57 3.79 </line>
<line>PRO CA 6.67 3.78 </line>
<line>GLN CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 445</line>
<line>ARG CA 355</line>
<line>VAL CA 309</line>
<line>SER CA 203</line>
<line>SER CA 136</line>
<line>ASN CA 121</line>
<line>GLY CA 221</line>
<line>SER CA 252</line>
<line>PRO CA 335</line>
<line>GLN CA 300</line>
<line>GLY CA 312</line>
</n14>
</entryChain>
<parallel>
<x>-47.659000396728516</x>
<y>-46.12799835205078</y>
<z>28.95800018310547</z>
</parallel>
<rotation>
<x>0.703000009059906</x>
<y>-0.2680000066757202</y>
<z>0.6589999794960022</z>
<x>-0.6140000224113464</x>
<y>0.23899999260902405</y>
<z>0.753000020980835</z>
<x>-0.35899999737739563</x>
<y>-0.9330000281333923</y>
<z>0.004000000189989805</z>
</rotation>
<rmsd>0.5116320252418518</rmsd>
<dmax>1.1688710451126099</dmax>
</indel>