NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2D3RA
confEVID 1ONAD-2D3RA
pdbIDA 1ONA
pdbIDB 2D3R
pdbChainA D
pdbChainB A
identity 0.793200016021729
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT------NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPNYQHIGINIKSIRSKATTRWNVQDGKVGTAHISYNSVAKRLSAIVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLYKETNTILSWSFTSKLKTNSTADAQSLHFTFNQFSQNPKDLILQGDASTDSDGNLQLTRVSN-GSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEEE EEEEE EEEEEEEEEE EEEEEEEE EEEEEEEEEEHHHH EEEEEEEEE EEEEEEEEEEEEEE EEEEEEE EEEEE EEE EEE EEE - EEEEEE EEEEEEEEEEEEE EEEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2D3R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2D3RA</entryIDChain>
<sequence>TRVSN-GSPQS</sequence>
<secondary-structure> EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1199 CA THR A 157 21.947 10.451 19.819 1.00 37.41 C </line>
<line>ATOM 1206 CA ARG A 158 23.223 9.970 16.194 1.00 40.61 C </line>
<line>ATOM 1217 CA VAL A 159 20.988 8.664 13.454 1.00 42.60 C </line>
<line>ATOM 1224 CA SER A 160 22.365 8.025 9.985 1.00 44.93 C </line>
<line>ATOM 1230 CA ASN A 161 19.974 7.986 7.071 1.00 46.67 C </line>
<line>ATOM 1238 CA GLY A 162 17.013 6.734 9.133 1.00 46.74 C </line>
<line>ATOM 1242 CA SER A 163 19.145 4.281 11.078 1.00 45.95 C </line>
<line>ATOM 1248 CA PRO A 164 20.228 4.965 14.703 1.00 44.75 C </line>
<line>ATOM 1255 CA GLN A 165 23.960 4.485 15.636 1.00 43.19 C </line>
<line>ATOM 1264 CA SER A 166 25.683 2.555 18.465 1.00 41.14 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLN PRO SER GLY ASN SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.84 7.56 7.70 11.06 12.34 13.13 10.14 6.68 3.87 </line>
<line>ARG CA 8.14 5.56 6.02 8.67 9.94 9.89 6.56 3.77 </line>
<line>VAL CA 9.19 5.57 3.98 5.32 6.18 6.50 3.79 </line>
<line>SER CA 10.62 6.86 6.02 5.06 5.57 3.77 </line>
<line>ASN CA 13.85 10.07 8.21 5.52 3.82 </line>
<line>GLY CA 13.41 9.78 6.67 3.79 </line>
<line>SER CA 10.01 6.63 3.84 </line>
<line>PRO CA 7.05 3.88 </line>
<line>GLN CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 437</line>
<line>ARG CA 345</line>
<line>VAL CA 311</line>
<line>SER CA 207</line>
<line>ASN CA 152</line>
<line>GLY CA 215</line>
<line>SER CA 242</line>
<line>PRO CA 330</line>
<line>GLN CA 297</line>
<line>SER CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>TRVSSNGSPQG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6429 CA THR D 157 8.362 22.129 53.360 1.00 17.83 C </line>
<line>ATOM 6436 CA ARG D 158 6.660 25.139 54.986 1.00 26.91 C </line>
<line>ATOM 6447 CA VAL D 159 5.254 27.835 52.742 1.00 31.86 C </line>
<line>ATOM 6454 CA SER D 160 3.394 30.807 54.143 1.00 53.44 C </line>
<line>ATOM 6460 CA SER D 161 0.140 32.328 52.723 1.00 69.30 C </line>
<line>ATOM 6466 CA ASN D 162 2.060 34.897 50.602 1.00 69.05 C </line>
<line>ATOM 6474 CA GLY D 163 3.748 31.901 48.986 1.00 55.35 C </line>
<line>ATOM 6478 CA SER D 164 7.073 32.341 50.820 1.00 45.00 C </line>
<line>ATOM 6484 CA PRO D 165 9.178 29.417 51.992 1.00 30.03 C </line>
<line>ATOM 6491 CA GLN D 166 10.196 29.119 55.619 1.00 15.78 C </line>
<line>ATOM 6496 CA GLY D 167 13.653 28.143 56.771 1.00 10.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLN PRO SER GLY ASN SER SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.71 7.57 7.46 10.60 11.66 14.50 13.12 10.03 6.53 3.82 </line>
<line>ARG CA 7.82 5.36 5.80 8.33 9.50 11.64 9.97 6.60 3.78 </line>
<line>VAL CA 9.32 5.86 4.30 5.23 5.74 8.04 6.81 3.78 </line>
<line>SER CA 10.92 7.16 6.33 5.19 5.28 5.57 3.86 </line>
<line>SER CA 14.71 10.95 9.52 7.19 5.21 3.85 </line>
<line>ASN CA 14.77 11.17 9.09 5.63 3.80 </line>
<line>GLY CA 13.15 9.66 6.69 3.82 </line>
<line>SER CA 9.81 6.57 3.79 </line>
<line>PRO CA 6.67 3.78 </line>
<line>GLN CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 445</line>
<line>ARG CA 355</line>
<line>VAL CA 309</line>
<line>SER CA 203</line>
<line>SER CA 136</line>
<line>ASN CA 121</line>
<line>GLY CA 221</line>
<line>SER CA 252</line>
<line>PRO CA 335</line>
<line>GLN CA 300</line>
<line>GLY CA 312</line>
</n14>
</entryChain>
<parallel>
<x>15.133999824523926</x>
<y>-21.35300064086914</y>
<z>-39.78900146484375</z>
</parallel>
<rotation>
<x>0.06599999964237213</x>
<y>-0.6949999928474426</y>
<z>0.7160000205039978</z>
<x>-0.007000000216066837</x>
<y>-0.7179999947547913</y>
<z>-0.6959999799728394</z>
<x>0.9980000257492065</x>
<y>0.04100000113248825</y>
<z>-0.05299999937415123</z>
</rotation>
<rmsd>0.5783630013465881</rmsd>
<dmax>1.2278050184249878</dmax>
</indel>