NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ONAD-2D3RC
confEVID 1ONAD-2D3RC
pdbIDA 1ONA
pdbIDB 2D3R
pdbChainA D
pdbChainB C
identity 0.793200016021729
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKT------NALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPNYQHIGINIKSIRSKATTRWNVQDGKVGTAHISYNSVAKRLSAIVSYPGGSSATVSYDVDLNNILPEWVRVGLSASTGLYKETNTILSWSFTSKLKTNSTADAQSLHFTFNQFSQNPKDLILQGDASTDSDGNLQLTRVSN-GSPQSNSVGRALYYAPVHVWDKSAVVASFDATFTFLIKSTDSDIADGIAFFIANTDSSIPHGSGGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEEHHHH EEEEEEEE EEEEEEEEEEEEE EEEEEEE EEEEE EEE EEE EEE - EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2D3R</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2D3RC</entryIDChain>
<sequence>TRVSN-GSPQS</sequence>
<secondary-structure> EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 4789 CA THR C 157 -23.127 23.659 12.828 1.00 40.36 C </line>
<line>ATOM 4796 CA ARG C 158 -25.071 20.407 12.428 1.00 44.44 C </line>
<line>ATOM 4807 CA VAL C 159 -23.482 17.230 10.951 1.00 46.28 C </line>
<line>ATOM 4814 CA SER C 160 -25.389 13.987 10.146 1.00 48.83 C </line>
<line>ATOM 4820 CA ASN C 161 -23.388 10.859 9.165 1.00 50.97 C </line>
<line>ATOM 4828 CA GLY C 162 -20.256 12.741 8.050 1.00 50.70 C </line>
<line>ATOM 4832 CA SER C 163 -22.434 15.191 6.137 1.00 49.01 C </line>
<line>ATOM 4838 CA PRO C 164 -23.048 18.904 6.851 1.00 47.44 C </line>
<line>ATOM 4845 CA GLN C 165 -26.579 20.263 6.891 1.00 46.83 C </line>
<line>ATOM 4854 CA SER C 166 -28.346 23.247 5.360 1.00 45.03 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLN PRO SER GLY ASN SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 9.12 7.66 7.64 10.81 12.26 13.32 10.29 6.71 3.81 </line>
<line>ARG CA 8.29 5.74 6.12 8.59 10.06 10.23 6.82 3.85 </line>
<line>VAL CA 9.55 5.94 4.45 5.33 6.24 6.62 3.85 </line>
<line>SER CA 10.84 7.17 6.37 5.12 5.68 3.84 </line>
<line>ASN CA 13.88 10.19 8.38 5.37 3.82 </line>
<line>GLY CA 13.53 9.89 6.87 3.80 </line>
<line>SER CA 10.02 6.59 3.83 </line>
<line>PRO CA 7.01 3.78 </line>
<line>GLN CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 432</line>
<line>ARG CA 341</line>
<line>VAL CA 304</line>
<line>SER CA 203</line>
<line>ASN CA 142</line>
<line>GLY CA 215</line>
<line>SER CA 240</line>
<line>PRO CA 329</line>
<line>GLN CA 294</line>
<line>SER CA 283</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>TRVSSNGSPQG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6429 CA THR D 157 8.362 22.129 53.360 1.00 17.83 C </line>
<line>ATOM 6436 CA ARG D 158 6.660 25.139 54.986 1.00 26.91 C </line>
<line>ATOM 6447 CA VAL D 159 5.254 27.835 52.742 1.00 31.86 C </line>
<line>ATOM 6454 CA SER D 160 3.394 30.807 54.143 1.00 53.44 C </line>
<line>ATOM 6460 CA SER D 161 0.140 32.328 52.723 1.00 69.30 C </line>
<line>ATOM 6466 CA ASN D 162 2.060 34.897 50.602 1.00 69.05 C </line>
<line>ATOM 6474 CA GLY D 163 3.748 31.901 48.986 1.00 55.35 C </line>
<line>ATOM 6478 CA SER D 164 7.073 32.341 50.820 1.00 45.00 C </line>
<line>ATOM 6484 CA PRO D 165 9.178 29.417 51.992 1.00 30.03 C </line>
<line>ATOM 6491 CA GLN D 166 10.196 29.119 55.619 1.00 15.78 C </line>
<line>ATOM 6496 CA GLY D 167 13.653 28.143 56.771 1.00 10.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLN PRO SER GLY ASN SER SER VAL ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.71 7.57 7.46 10.60 11.66 14.50 13.12 10.03 6.53 3.82 </line>
<line>ARG CA 7.82 5.36 5.80 8.33 9.50 11.64 9.97 6.60 3.78 </line>
<line>VAL CA 9.32 5.86 4.30 5.23 5.74 8.04 6.81 3.78 </line>
<line>SER CA 10.92 7.16 6.33 5.19 5.28 5.57 3.86 </line>
<line>SER CA 14.71 10.95 9.52 7.19 5.21 3.85 </line>
<line>ASN CA 14.77 11.17 9.09 5.63 3.80 </line>
<line>GLY CA 13.15 9.66 6.69 3.82 </line>
<line>SER CA 9.81 6.57 3.79 </line>
<line>PRO CA 6.67 3.78 </line>
<line>GLN CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 445</line>
<line>ARG CA 355</line>
<line>VAL CA 309</line>
<line>SER CA 203</line>
<line>SER CA 136</line>
<line>ASN CA 121</line>
<line>GLY CA 221</line>
<line>SER CA 252</line>
<line>PRO CA 335</line>
<line>GLN CA 300</line>
<line>GLY CA 312</line>
</n14>
</entryChain>
<parallel>
<x>-28.750999450683594</x>
<y>-12.364999771118164</y>
<z>-42.900001525878906</z>
</parallel>
<rotation>
<x>-0.05000000074505806</x>
<y>0.7730000019073486</y>
<z>-0.6330000162124634</z>
<x>-0.17800000309944153</x>
<y>-0.6299999952316284</y>
<z>-0.7559999823570251</z>
<x>-0.9829999804496765</x>
<y>0.07500000298023224</y>
<z>0.16899999976158142</z>
</rotation>
<rmsd>0.6573569774627686</rmsd>
<dmax>1.4496790170669556</dmax>
</indel>